BAC Information

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BAC

Clone NameB6Ng01-114M10
Chromosome1 (Build37)
Map Location 61,807,867 - 61,955,046
singlet/doubletdoublet
Overlap genePard3b
Upstream geneCd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M10.bB6Ng01-114M10.g
ACCDH920210DH920211
length1,1561,137
definitionDH920210|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M10, 5' end.DH920211|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,807,867 - 61,809,022)(61,953,896 - 61,955,046)
sequence
gaattcattgaggtgatctttagggttatactaacttttacatattaatt
atctaaatgaccatggttgacatttgcatttttataactcttatactact
acaataaatcctatctgattatattacttttatatacattactgaatttg
attttaatatatttaagattttcccatatgtatccaggagagaaaaacta
caatgaaggcaattagtgactggaagcagggaaattaacctctcccagga
atgaatcccttgtttgttgtccaatgaagaatggtgatccctgaaaccat
gtgcatatatatgcaggtttttttgcatacacatggatacatacttacat
gtatagcaataatcaaagaaaagggctatcaacttgagaattgggaggca
ttgttggggtttgagggaatatacctgggaagggctggaaggaggaaagg
ggataatattacttaaaaacatacaaatttaatgagtttagtgaatatcc
catgcactcttgttgaaatgtgttttctgagctgttttggtttcattata
ataggcatgtatttttgttactatgtataaaataaagaattgggtctaat
atgttaattgtgtttaggagtttccaaatttgcatgtatcgtgcatagta
tgatctttctgtcccgtggcaggatgctcactgcagcaatgctattgggt
atgtacagggtgagaagccttctcttcttggtggattttgcctttagtaa
cagtttccctgtgtctcttctgcctgataatagtaagactgcatcacctc
tcttttgataggattatcgaacttcgagctgaaagcacatttgtagaggt
acttactcgtgtgctccttattttataatgtgagattaagtgtcttgtgg
cattcaccagatattactttgaacccacaatgaaacccattgcaccttcg
tatttgtgaatcttcagagccacagtttatgaaaattgtgtcagcaatgt
tgatcttgtttggctttctttctgaagttgcagtgggataaatctattct
gggaacatgaagccatgtttagaaccgccatgggggaggaaatccactga
aattatatggcccactgcttggtgaattgcaggaaccttgggtagtccct
actttc
gaattcatttagaatatgagaagttggtggctgtatacacagaagcactc
tgatgaccacagtcattaagacaaatccaagtttgcaatgactccacaac
caaccattctctcaggcgagtaggaacttctggcgaatgccctgctactg
aagctgagtctctatgggattcgcatgcatccctgcttagtgcaatatca
tgacatttgggaacagagaagcaaggaagccatggtcagcttttgacacc
acatctactttgatttgtgtcacaagacccaactcaaggagacccctcca
tttccagtagaaagaaagactatttctgaagaagcagggacaaatgggtg
gtttagaacaaactagacttgctacataaatccctcagcctgggtcatca
gctttgcattacaatgtttgtctaatatttctctacaaatataccataca
gtccttgatccatctcagcaaagaaaaacagttaacttttcatgtttctt
tgaggctttgtatacttctaaaggatcaagtatattttaatgatacttac
atgcttctagcttgttgatggatctttttgttttataacatccatgaact
tagtgatgagtaaagaaagacttttcccctacattttcttcatacagtat
gactgcataaaataccagtagctaacaagaacataatagtcttcattctc
aagaaaaggaggggggcctttcatgaaatgaatggtatttacttatgaac
tggtagaggttgccaagaatcctgacaatggaattaagtgaaggaactta
gaaaagaaatgttggaagttcactgtgcaaaaaatgggtattattgaaaa
ctctttagcagttactagtaatggatggaacggtctttcttagatttaaa
aggagaaaccgctgaaataaagcacctgattgtacaccatagatatgttg
ctgtgtttctatttgactagatctgagatgtagtgtcatttttcagaata
atatttctctttttaaatttatcccctttgatgtattacaaatgttgttt
gccagagcaactgagtactgtggccagatgcctattactctaagctgtct
gaatgtctgttatgcatcttatgggatgcaagtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61807867_61809022
seq2: B6Ng01-114M10.b_47_1202

seq1  GAATTCATTGAGGTGATCTTTAGGGTTATACTAACTTTTACATATTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGGTGATCTTTAGGGTTATACTAACTTTTACATATTAATT  50

seq1  ATCTAAATGACCATGGTTGACATTTGCATTTTTATAACTCTTATACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATGACCATGGTTGACATTTGCATTTTTATAACTCTTATACTACT  100

seq1  ACAATAAATCCTATCTGATTATATTACTTTTATATACATTACTGAATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATCCTATCTGATTATATTACTTTTATATACATTACTGAATTTG  150

seq1  ATTTTAATATATTTAAGATTTTCCCATATGTATCCAGGAGAGAAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATATATTTAAGATTTTCCCATATGTATCCAGGAGAGAAAAACTA  200

seq1  CAATGAAGGCAATTAGTGACTGGAAGCAGGGAAATTAACCTCTCCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGGCAATTAGTGACTGGAAGCAGGGAAATTAACCTCTCCCAGGA  250

seq1  ATGAATCCCTTGTTTGTTGTCCAATGAAGAATGGTGATCCCTGAAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCCTTGTTTGTTGTCCAATGAAGAATGGTGATCCCTGAAACCAT  300

seq1  GTGCATATATATGCAGGTTTTTTTGCATACACATGGATACATACTTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATATATGCAGGTTTTTTTGCATACACATGGATACATACTTACAT  350

seq1  GTATAGCAATAATCAAAGAAAAGGGCTATCAACTTGAGAATTGGGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCAATAATCAAAGAAAAGGGCTATCAACTTGAGAATTGGGAGGCA  400

seq1  TTGTTGGGGTTTGAGGGAATATACCTGGGAAGGGCTGGAAGGAGGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGGTTTGAGGGAATATACCTGGGAAGGGCTGGAAGGAGGAAAGG  450

seq1  GGATAATATTACTTAAAAACATACAAATTTAATGAGTTTAGTGAATATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATATTACTTAAAAACATACAAATTTAATGAGTTTAGTGAATATCC  500

seq1  CATGCACTCTTGTTGAAATGTGTTTTCTGAGCTGTTTTGGTTTCATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTCTTGTTGAAATGTGTTTTCTGAGCTGTTTTGGTTTCATTATA  550

seq1  ATAGGCATGTATTTTTGTTACTATGTATAAAATAAAGAATTGGGTCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGTATTTTTGTTACTATGTATAAAATAAAGAATTGGGTCTAAT  600

seq1  ATGTTAATTGTGTTTAGGAGTTTCCAAATTTGCATGTATCGTGCATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTGTGTTTAGGAGTTTCCAAATTTGCATGTATCGTGCATAGTA  650

seq1  TGATCTTTCTGTCCCGTGGCAGGATGCTCACTGCAGCAATGCTATTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCTGTCCCGTGGCAGGATGCTCACTGCAGCAATGCTATTGGGT  700

seq1  ATGTACAGGGTGAGAAGCCTTCTCTTCTTGGTGGATTTTGCCTTTAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGGTGAGAAGCCTTCTCTTCTTGGTGGATTTTGCCTTTAGTAA  750

seq1  CAGTTTCCCTGTGTCTCTTCTGCCTGATAATAGTAAGACTGCATCACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCCTGTGTCTCTTCTGCCTGATAATAGTAAGACTGCATCACCTC  800

seq1  TCTTTTGATAGGATTATCGAACTTCGAGCTGAAAGCACATTTGTAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGATAGGATTATCGAACTTCGAGCTGAAAGCACATTTGTAGAGGT  850

seq1  ACTTACTCGTGTGCTCCTTATTTTTATAATGTGAGATTAAGTGTCTTGTG  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTACTCGTGTGCTCCTTA-TTTTATAATGTGAGATTAAGTGTCTTGTG  899

seq1  GCATTCACCAGATATTACTTTGAACCCACAATGAAACCCATTGCACCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACCAGATATTACTTTGAACCCACAATGAAACCCATTGCACCTTC  949

seq1  GTATTTGTGAATTCTTCAGAAGCACAGTTTATGAAAATTGTGTCAGCAAT  1000
      ||||||||||| ||||||||  ||||||||||||||||||||||||||||
seq2  GTATTTGTGAA-TCTTCAGAGCCACAGTTTATGAAAATTGTGTCAGCAAT  998

seq1  GTTGATCTTGTTTGGCTTTC-TTCTGAAGTTTGCAGTTGGAT-AATCTAT  1048
      |||||||||||||||||||| |||||||| ||||||| |||| |||||||
seq2  GTTGATCTTGTTTGGCTTTCTTTCTGAAG-TTGCAGTGGGATAAATCTAT  1047

seq1  TCTGGGAACATGAAGGCATGTTTAGAA-CGCAATTGGGGAGGAATTACAA  1097
      ||||||||||||||| ||||||||||| ||| || ||||||||| | | |
seq2  TCTGGGAACATGAAGCCATGTTTAGAACCGCCATGGGGGAGGAAAT-CCA  1096

seq1  CATGAATTATATGCACCACTGCCTTGTGGATTGCAGGAACCTT-GGTATG  1146
      |   |||||||||  ||||||| | ||| |||||||||||||| ||||  
seq2  CTGAAATTATATGGCCCACTGCTTGGTGAATTGCAGGAACCTTGGGTAGT  1146

seq1  CCCTACTTTC  1156
      ||||||||||
seq2  CCCTACTTTC  1156

seq1: chr1_61953896_61955046
seq2: B6Ng01-114M10.g_69_1205 (reverse)

seq1  CCTCACTCGCATCCCACTAGATGCATAACAGACATCCAG-CAGCTTTAAG  49
      ||||||| ||||||||  ||||||||||||||||| ||| ||||||  ||
seq2  CCTCACTTGCATCCCATAAGATGCATAACAGACATTCAGACAGCTT--AG  48

seq1  AGTAATAGGCATCTTGGGCCACAGTACTCAGTTGCTCTTGTGCAAACCAC  99
      ||||||||||||||  ||||||||||||||||||||||   |||||| ||
seq2  AGTAATAGGCATCT--GGCCACAGTACTCAGTTGCTCT--GGCAAACAAC  94

seq1  ATTTTGTAATTACATTCAAAAGGGGATAAATTTTAAAAAGAGAAATATTA  149
      | ||||||| |||||   |||||||||||| |||||||||||||||||||
seq2  A-TTTGTAA-TACAT--CAAAGGGGATAAA-TTTAAAAAGAGAAATATTA  139

seq1  TTCTGAAAAATGACAACCTAACATCTCAGATCTAGTCAAATAGAAACACA  199
      |||||||||||||||  || ||||||||||||||||||||||||||||||
seq2  TTCTGAAAAATGACA--CT-ACATCTCAGATCTAGTCAAATAGAAACACA  186

seq1  GCAACATATCTATGGTGTTACAATCAGGTGCTTTATTTCAGCGGTTTCTC  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAACATATCTATGGTG-TACAATCAGGTGCTTTATTTCAGCGGTTTCTC  235

seq1  CTTTTAAATCTAAGAAAGACCGTTCCATCCATTACTAGTAACTGCTAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATCTAAGAAAGACCGTTCCATCCATTACTAGTAACTGCTAAAG  285

seq1  AGTTTTCAATAATACCCATTTTTTGCACAGTGAACTTCCAACATTTCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAATAATACCCATTTTTTGCACAGTGAACTTCCAACATTTCTTT  335

seq1  TCTAAGTTCCTTCACTTAATTCCATTGTCAGGATTCTTGGCAACCTCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTCCTTCACTTAATTCCATTGTCAGGATTCTTGGCAACCTCTAC  385

seq1  CAGTTCATAAGTAAATACCATTCATTTCATGAAAGGCCCCCCTCCTTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATAAGTAAATACCATTCATTTCATGAAAGGCCCCCCTCCTTTTC  435

seq1  TTGAGAATGAAGACTATTATGTTCTTGTTAGCTACTGGTATTTTATGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATGAAGACTATTATGTTCTTGTTAGCTACTGGTATTTTATGCAG  485

seq1  TCATACTGTATGAAGAAAATGTAGGGGAAAAGTCTTTCTTTACTCATCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTGTATGAAGAAAATGTAGGGGAAAAGTCTTTCTTTACTCATCAC  535

seq1  TAAGTTCATGGATGTTATAAAACAAAAAGATCCATCAACAAGCTAGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCATGGATGTTATAAAACAAAAAGATCCATCAACAAGCTAGAAGC  585

seq1  ATGTAAGTATCATTAAAATATACTTGATCCTTTAGAAGTATACAAAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTATCATTAAAATATACTTGATCCTTTAGAAGTATACAAAGCCT  635

seq1  CAAAGAAACATGAAAAGTTAACTGTTTTTCTTTGCTGAGATGGATCAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACATGAAAAGTTAACTGTTTTTCTTTGCTGAGATGGATCAAGG  685

seq1  ACTGTATGGTATATTTGTAGAGAAATATTAGACAAACATTGTAATGCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGGTATATTTGTAGAGAAATATTAGACAAACATTGTAATGCAAA  735

seq1  GCTGATGACCCAGGCTGAGGGATTTATGTAGCAAGTCTAGTTTGTTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGACCCAGGCTGAGGGATTTATGTAGCAAGTCTAGTTTGTTCTAA  785

seq1  ACCACCCATTTGTCCCTGCTTCTTCAGAAATAGTCTTTCTTTCTACTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCATTTGTCCCTGCTTCTTCAGAAATAGTCTTTCTTTCTACTGGA  835

seq1  AATGGAGGGGTCTCCTTGAGTTGGGTCTTGTGACACAAATCAAAGTAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGGGTCTCCTTGAGTTGGGTCTTGTGACACAAATCAAAGTAGAT  885

seq1  GTGGTGTCAAAAGCTGACCATGGCTTCCTTGCTTCTCTGTTCCCAAATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCAAAAGCTGACCATGGCTTCCTTGCTTCTCTGTTCCCAAATGT  935

seq1  CATGATATTGCACTAAGCAGGGATGCATGCGAATCCCATAGAGACTCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATTGCACTAAGCAGGGATGCATGCGAATCCCATAGAGACTCAGC  985

seq1  TTCAGTAGCAGGGCATTCGCCAGAAGTTCCTACTCGCCTGAGAGAATGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCAGGGCATTCGCCAGAAGTTCCTACTCGCCTGAGAGAATGGT  1035

seq1  TGGTTGTGGAGTCATTGCAAACTTGGATTTGTCTTAATGACTGTGGTCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGGAGTCATTGCAAACTTGGATTTGTCTTAATGACTGTGGTCAT  1085

seq1  CAGAGTGCTTCTGTGTATACAGCCACCAACTTCTCATATTCTAAATGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCTTCTGTGTATACAGCCACCAACTTCTCATATTCTAAATGAAT  1135

seq1  TC  1151
      ||
seq2  TC  1137