BAC Information

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BAC

Clone NameB6Ng01-115B13
Chromosome1 (Build37)6 (Build37)
Map Location 142,609,940 - 142,610,44964,640,477 - 64,641,369
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115B13.bB6Ng01-115B13.g
ACCDH920448DH920449
length1,018890
definitionDH920448|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B13, 5' end.DH920449|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,609,940 - 142,610,449)(64,640,477 - 64,641,369)
sequence
gaattctctggtggaatttttagggtcacttatatatactatcatatcat
ctgcaaaaagtgatattttgacttcctcttttccaatttgtatccccttg
atctccttttgttgtcgaattgctctggctaatacttcaagtactatgtt
gaaaaggtagggagaaagtgggcagccttgtctagtccctgattttagtg
ggattgcttccagcttctctccatttactttgatgttggctactggtttg
ctgtagattgcttttatcatgtttaggtatgggccttgaattcctgatct
ttccagaacttttatcatgaatgggtgttggatcttgtcaaatgcttttt
ctgcatctaacaagatgatcatgtggtttttgtctttgagtttgtttata
taatggattacattgatggattttcatatattaaaccatccctgcatccc
tggaataaaacctacttggtcaggatggatgattgctttaatgtgttctt
ggattcggttagcaaggattttattgaggatttttgcatcgatattcata
agagaaattggtctgaagttctctatctttgttggatctttctgtggttt
aggtatcagagtaatagtggcttcataaaatgagttgggtagagtacctt
ctacttctatcttgtgaaaaagtttgtgcagaactggaattagatcttct
ttgaaggtctggtagaactctgcactaaacccatctggtcctgggctttt
tttggctgggagactatttataactgcttctatttctttaggggatatgg
gactgtttagaaggtcaacttgatcctgattcaactttcgtacctggtat
ctgttcagaaatttgtccatttcggccaggttttccagttttgttgagta
tagccttttgtagaaggatctgatggtgttttggatttcttcaggatctg
tgttatgtctccctttcagtctgatttgttaataggatttgtccctgtgc
cctctagtgagtctggct
gaattctgtcctgtacagaggaaaactgaagcagaaatgccagggagaaa
ctgggagtatttggaagggaaaaaaaaaaaaagggaaatgtttttcttaa
aaaataaaacagaatggtgggacaagttattggtttgggcagactgcact
tggtaaaaggggacagagagaaggtcacaggtttccagaggaacaatctg
gggatcccaggattcccaaaggatcctgtttccactaaatgatcagaagc
agcaaagccattagaactgaaagcaacaccatcgcagcctggggcgtgag
cagttccctgagatgctagtgtgggttcccacgcagaggcttctcctaca
tcaatagttgtgtgtaaaaatgcagcacgctgtcatacattcagtaagtc
agtgtgagaagtgaacgtcacctatagtcatcatgaattgtgagttacac
acacacaacacacacacacacacacacacgtctcagtccacattagagac
agtcaagaatagcataatatggcccttgctctcttgccctgtcctcttga
tgcttaccctctctctattccttcccctatcccctctctctgcatgctca
tggctggcctctactcctctattctctctctctctctctctctctctctc
tctctctctctctctctctcaacttccctccccatgtcctgaataaactc
tattctatacttaaaaacaaacaacaaaaaaaaaaaaccagcatactatg
gaacaatggttcccactgtgtgatgtggtgcccacgtttccacagttgga
aaatatagtctgttgtaaggtatcaactgttcacattcttgatcagggat
tcttaccccgtcttggagatgaatgactctttcacggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142609940_142610449
seq2: B6Ng01-115B13.b_52_561 (reverse)

seq1  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT  50

seq1  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCA  100

seq1  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  150

seq1  TCGCTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  200
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  200

seq1  AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAA  250

seq1  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  300

seq1  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  350

seq1  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  400

seq1  AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA  450

seq1  TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTC  500

seq1  CACCAGAGAA  510
      ||||||||||
seq2  CACCAGAGAA  510

seq1: chr6_64640477_64641369
seq2: B6Ng01-115B13.g_69_958

seq1  GAATTCTGTCCTGTACAGAGGAAAACTGAAGCAGAAATGCCAGGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTGTACAGAGGAAAACTGAAGCAGAAATGCCAGGGAGAAA  50

seq1  CTGGGAGTATTTGGAAGGGAAAAAAAAAAAAAGGGAAATGTTTTTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTATTTGGAAGGGAAAAAAAAAAAAAGGGAAATGTTTTTCTTAA  100

seq1  AAAATAAAACAGAATGGTGGGACAAGTTATTGGTTTGGGCAGACTGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAACAGAATGGTGGGACAAGTTATTGGTTTGGGCAGACTGCACT  150

seq1  TGGTAAAAGGGGACAGAGAGAAGGTCACAGGTTTCCAGAGGAACAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAGGGGACAGAGAGAAGGTCACAGGTTTCCAGAGGAACAATCTG  200

seq1  GGGATCCCAGGATTCCCAAAGGATCCTGTTTCCACTAAATGATCAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCAGGATTCCCAAAGGATCCTGTTTCCACTAAATGATCAGAAGC  250

seq1  AGCAAAGCCATTAGAACTGAAAGCAACACCATCGCAGCCTGGGGCGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCATTAGAACTGAAAGCAACACCATCGCAGCCTGGGGCGTGAG  300

seq1  CAGTTCCCTGAGATGCTAGTGTGGGTTCCCACGCAGAGGCTTCTCCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCTGAGATGCTAGTGTGGGTTCCCACGCAGAGGCTTCTCCTACA  350

seq1  TCAATAGTTGTGTGTAAAAATGCAGCACGCTGTCATACATTCAGTAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTTGTGTGTAAAAATGCAGCACGCTGTCATACATTCAGTAAGTC  400

seq1  AGTGTGAGAAGTGAACGTCACCTATAGTCATCATGAATTGTGAGTTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGAAGTGAACGTCACCTATAGTCATCATGAATTGTGAGTTACAC  450

seq1  ACACACAACACACACACACACACACACACGTCTCAGTCCACATTAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAACACACACACACACACACACACGTCTCAGTCCACATTAGAGAC  500

seq1  AGTCAAGAATAGCATAATATGGCCCTTGCTCTCTTGCCCTGTCCTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATAGCATAATATGGCCCTTGCTCTCTTGCCCTGTCCTCTTGA  550

seq1  TGCTTACCCTCTCTCTATTCCTTCCCCTATCCCCTCTCTCTGCATGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACCCTCTCTCTATTCCTTCCCCTATCCCCTCTCTCTGCATGCTCA  600

seq1  TGGCTGGCCTCTACTCCTCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTCTACTCCTCTATTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCAACTCCCCTCCCCATGTCCTGAATAAACTC  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCAACTTCCCTCCCCATGTCCTGAATAAACTC  700

seq1  TATTCTATACTTAAAAACAAACAAACAAAAAAAAAAAACAGCATACTATG  750
      ||||||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  TATTCTATACTTAAAAACAAACAACAAAAAAAAAAAACCAGCATACTATG  750

seq1  GAACATGTGTTCCCACTGTGTGATAGTGTTCCCACTTTTCCACAGCTTGG  800
      |||||   ||||||||||||||||   || ||||| ||||||||| ||||
seq2  GAACAATGGTTCCCACTGTGTGATGTGGTGCCCACGTTTCCACAG-TTGG  799

seq1  AGATTTCAGTCTGTTGTTATGTATTCAACTG-TCACATCCTAGACCAGTG  849
      | | |  |||||||||| | ||| ||||||| |||||| || || ||| |
seq2  AAAATATAGTCTGTTGTAAGGTA-TCAACTGTTCACATTCTTGATCAGGG  848

seq1  ATTCTCAACCCATCCTGTAGATAGAATGACTCTTTCACAGGGGT  893
      ||||| | ||| || || |||| ||||||||||||||| |||||
seq2  ATTCTTACCCCGTCTTGGAGAT-GAATGACTCTTTCAC-GGGGT  890