BAC Information

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BAC

Clone NameB6Ng01-115D22
Chromosome1 (Build37)
Map Location 129,684,875 - 129,806,627
singlet/doubletdoublet
Overlap geneCcnt2, Ysk4, Rab3gap1
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163, Acmsd
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D22.bB6Ng01-115D22.g
ACCDH920560DH920561
length1,100473
definitionDH920560|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D22, 5' end.DH920561|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,805,507 - 129,806,627)(129,684,875 - 129,685,352)
sequence
gaattcctagtatgaaacaccattagataatcttaatttcttaatatatt
ttcttttcaatctattttaataggttaaacacagttccaaatgttctcac
ctggaggctgctgaggccaaaagtattgctgccaatcctgaagcacgtat
gtgagccgaatcgcaatgctaactggaggcaatggagttaaaggacagcc
ctagaaacacatgcaaagacaataccatgtaaatgttttagcctgtgttt
aaaaacttcagcaacaacatttcaaagctgagaaactagaattttaagtt
tacagtttcaaacactagtgtatagagtcaaacatgaaaaaaaaaataag
actgacccagttgtgtatagcttaaataaccaagacggaagatactagct
gagcatggtgcaggccgttcatcctagcactcgagagacagaggcagaca
gagctttgtgagtttgagatctgaattgtctacacagcaacttccaagcc
agccaaggctacatagtgatacatgccttaaaataaataaaattttggaa
aggaaaaaaaactgcaatcccaactgacacatctataatgtaacctctac
aaagtaaggctcggcgatcaccaaggggggatggaaagattttaagagcc
agatcttaacttttaatgtctgtgtgcatgtaagtaagtggttgtaggaa
taggtacagcctatgaaactggatagggaaccctgagtggggatcaagag
ggactgagaaagggagtgggcgacacgtcacatgacattcaagtggaaca
ggggtcactgcagggaggtgggggagaggagagcacaaggaaaggggaaa
ggtcaaggggagaagtgtcacagagacaaaagcatcacaatgaagtgcaa
cggttttaagctaataactctgtatggaaagaaactaaggaggagagact
acagaacttaaaactggaaagcaactccaggaatgcactattatttgatt
gggtctttgtagagcagagatctctttactctgcgtattttttcacaata
tttcatctatgaaaggtatgtacgtaaaaaaaaggagctgctgctgtgtt

ttgtaagctgatcagaaaaagcagtcttccatatagaatgcagtcatatc
tggtatgatcaaagtcaaccttgaacttaaagctcagatagctgttagtt
accaggagtccatctaaaaaagggcttgggtttgtttggagccctaatgg
agtaaggtgtttgtaggctgttagaggtgtgggatggaattagtgggttt
cccaggaactaactaggaagagtgttaggtttagtactatactgcagaag
acaagatttaagcagtttatgtgtaccagagaaagagtgttgtgggtaat
gaagccaggaatctgtcccactgatttctgcctaactccttgtatgcttc
ttgttttaaaagtaatgtaacacttggaagaaaagtttgagtagcttgaa
atttgtatttttttttttatttttaatattgagacttgcttgctagtgtg
aagaggatggggaggtattgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129805507_129806627
seq2: B6Ng01-115D22.b_47_1146 (reverse)

seq1  AACACAGCAGCAGCTTCTTTTTTTTTTTTTAACGTACATAACTTTTCCAT  50
      ||||||||||||||| |||||||||      ||||||||| ||||  || 
seq2  AACACAGCAGCAGCTCCTTTTTTTT------ACGTACATACCTTT--CA-  41

seq1  TAGATGAAAATATTTGTGGAAAAAATACGCAGAGGTTAAAGAGATCTCTT  100
      |||||| ||||| |||| ||||||||||||||||  |||||||||||| |
seq2  TAGATG-AAATA-TTGT-GAAAAAATACGCAGAG--TAAAGAGATCTC-T  85

seq1  GCTCTACAAAGACCCAATCAAATAATAGTGGCATTTCCTGGAGTTTGCTT  150
      ||||||||||||||||||||||||||||| ||| ||||||||| |||| |
seq2  GCTCTACAAAGACCCAATCAAATAATAGT-GCA-TTCCTGGAG-TTGC-T  131

seq1  TTCCAGTTTTTAAGTTCTGTAGTCTCTTCCTCCTTAGTTTTCTTTCCATA  200
      |||||| ||||||||||||||||||| |||||||||| ||||||||||||
seq2  TTCCAG-TTTTAAGTTCTGTAGTCTC-TCCTCCTTAG-TTTCTTTCCATA  178

seq1  CAGAGTTTATTAGCTTAAAACCGTTGCACTTCATTGTGATGCTTTTGTCT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAG-TTATTAGCTTAAAACCGTTGCACTTCATTGTGATGCTTTTGTCT  227

seq1  CTGTGACACTTCTCCCC-TGACCTTTCCCC-TTCCTTGTGCTCTCCTCTC  298
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CTGTGACACTTCTCCCCTTGACCTTTCCCCTTTCCTTGTGCTCTCCTCTC  277

seq1  CCCCACCTCCCTGCAGTGACCCCTGTTCCACTTGAATGTCATGTGACGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCCTGCAGTGACCCCTGTTCCACTTGAATGTCATGTGACGTG  327

seq1  TCGCCCACTCCCTTTCTCAGTCCCTCTTGATCCCCACTCAGGGTTCCCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCACTCCCTTTCTCAGTCCCTCTTGATCCCCACTCAGGGTTCCCTA  377

seq1  TCCAGTTTCATAGGCTGTACCTATTCCTACAACCACTTACTTACATGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTCATAGGCTGTACCTATTCCTACAACCACTTACTTACATGCAC  427

seq1  ACAGACATTAAAAGTTAAGATCTGGCTCTTAAAATCTTTCCATCCCCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTAAAAGTTAAGATCTGGCTCTTAAAATCTTTCCATCCCCCCT  477

seq1  TGGTGATCGCCGAGCCTTACTTTGTAGAGGTTACATTATAGATGTGTCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCGCCGAGCCTTACTTTGTAGAGGTTACATTATAGATGTGTCAG  527

seq1  TTGGGATTGCAGTTTTTTTTCCTTTCCAAAATTTTATTTATTTTAAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTGCAGTTTTTTTTCCTTTCCAAAATTTTATTTATTTTAAGGCA  577

seq1  TGTATCACTATGTAGCCTTGGCTGGCTTGGAAGTTGCTGTGTAGACAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACTATGTAGCCTTGGCTGGCTTGGAAGTTGCTGTGTAGACAATT  627

seq1  CAGATCTCAAACTCACAAAGCTCTGTCTGCCTCTGTCTCTCGAGTGCTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCAAACTCACAAAGCTCTGTCTGCCTCTGTCTCTCGAGTGCTAG  677

seq1  GATGAACGGCCTGCACCATGCTCAGCTAGTATCTTCCGTCTTGGTTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACGGCCTGCACCATGCTCAGCTAGTATCTTCCGTCTTGGTTATTT  727

seq1  AAGCTATACACAACTGGGTCAGTCTTATTTTTTTTTTCATGTTTGACTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATACACAACTGGGTCAGTCTTATTTTTTTTTTCATGTTTGACTCT  777

seq1  ATACACTAGTGTTTGAAACTGTAAACTTAAAATTCTAGTTTCTCAGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAGTGTTTGAAACTGTAAACTTAAAATTCTAGTTTCTCAGCTTT  827

seq1  GAAATGTTGTTGCTGAAGTTTTTAAACACAGGCTAAAACATTTACATGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTGTTGCTGAAGTTTTTAAACACAGGCTAAAACATTTACATGGT  877

seq1  ATTGTCTTTGCATGTGTTTCTAGGGCTGTCCTTTAACTCCATTGCCTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTGCATGTGTTTCTAGGGCTGTCCTTTAACTCCATTGCCTCCA  927

seq1  GTTAGCATTGCGATTCGGCTCACATACGTGCTTCAGGATTGGCAGCAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTGCGATTCGGCTCACATACGTGCTTCAGGATTGGCAGCAATA  977

seq1  CTTTTGGCCTCAGCAGCCTCCAGGTGAGAACATTTGGAACTGTGTTTAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCCTCAGCAGCCTCCAGGTGAGAACATTTGGAACTGTGTTTAAC  1027

seq1  CTATTAAAATAGATTGAAAAGAAAATATATTAAGAAATTAAGATTATCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAATAGATTGAAAAGAAAATATATTAAGAAATTAAGATTATCTA  1077

seq1  ATGGTGTTTCATACTAGGAATTC  1121
      |||||||||||||||||||||||
seq2  ATGGTGTTTCATACTAGGAATTC  1100

seq1: chr1_129684875_129685352
seq2: B6Ng01-115D22.g_68_546

seq1  GAATTCTTGTAAGCTGATCAGAAAAAGCAGTCTTCCATATAGAATGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAAGCTGATCAGAAAAAGCAGTCTTCCATATAGAATGCAGT  50

seq1  CATATCTGGTATGATCAAAGTCAACCTTGAACTTAAAGCTCAGATAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGTATGATCAAAGTCAACCTTGAACTTAAAGCTCAGATAGCTG  100

seq1  TTAGTTACCAGGAGTCCATCTAAAAAAGGGCTTGGGTTTGTTTGGAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACCAGGAGTCCATCTAAAAAAGGGCTTGGGTTTGTTTGGAGCCC  150

seq1  TAATGGAGTAAGGTGTTTGTAGGCTGTTAGAGGTGTGGGATGGAATTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGTAAGGTGTTTGTAGGCTGTTAGAGGTGTGGGATGGAATTAGT  200

seq1  GGGTTTCCCAGGAACTAACTAGGAAGAGTGTTAGGTTTAGTACTATACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCCAGGAACTAACTAGGAAGAGTGTTAGGTTTAGTACTATACTG  250

seq1  CAGAAGACAAGATTTAAGCAGTTTATGTGTACCAGAGAAAGAGTGTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAAGATTTAAGCAGTTTATGTGTACCAGAGAAAGAGTGTTGTG  300

seq1  GGTAATGAAGCCAGGAATCTGTCCCACTGATTTCTGCCTAACTCCTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGAAGCCAGGAATCTGTCCCACTGATTTCTGCCTAACTCCTTGTA  350

seq1  TGCTTCTTGTTTTAAAAGTAATGTAACACTTGGAAGAAAAG-TTGTGTAG  399
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TGCTTCTTGTTTTAAAAGTAATGTAACACTTGGAAGAAAAGTTTGAGTAG  400

seq1  CTTGAAATTTGTATTTTTTTTTTTATTTTTAATATTGAGACTTGCTTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATTTGTATTTTTTTTTTTATTTTTAATATTGAGACTTGCTTGCT  450

seq1  AGTGTGAAGAGGATGGGGAGGTATTGTTA  478
      |||||||||||||||||||||||||||||
seq2  AGTGTGAAGAGGATGGGGAGGTATTGTTA  479