BAC Information

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BAC

Clone NameB6Ng01-115G07
Chromosome1 (Build37)
Map Location 18,639,731 - 18,640,833
singlet/doubletsinglet
Overlap genenone
Upstream geneCrispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115G07.bB6Ng01-115G07.g
ACCDH920671DH920672
length1,2591,081
definitionDH920671|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G07, 5' end.DH920672|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagttttatcatac
agatcttttcacttccttcgttagagtcacgccgagatattttatattat
tttgtggcctattgagaagggtgttgtttccctaatttctttctcagcct
gtttattctttgtgtagagaaggccattgacttgtttgagttattttata
ttccagctacttcacgaagctgttttataggtttagagtctctgtggaat
tttaagggtccttaataatatcatcaatcattgcaaagggataatattaa
acttcctctttccaatgtatcccagaatcctctttgttgcgatgcctggc
aaacttcagtcatatgtgaaatgacgtatgaaataggtgtcgcatggtat
cgtaccgct
gaattctgatctacctcctgagttctggggtcagaactctccctataggc
agactctcctctggcaaggaatgtgcccaggggtctgggtctcagctctg
cctcctggctgaggatgaaggcctgaaggaaccctgaccaagaagctctg
ttgcttctatcacccatgtgctctcaggtgatcaggaggtcctgggtgtg
ccaggggtcctggagtgtggagagtcctctggtgccctagatgcccttgg
ctgggttcatgcagaagatggtggggctggccctgacctcaatggatccc
agcctctggttgggcggggctcttttgtccctgctcctgctggtacaaga
ccctccatgattctttggaactgatgtttcgctccactcacctgtgatcc
caaggtaatcctgaggtcctgtggtgtggagagcactctggagcccttag
tagtggcctctgctgggctcagaaggaacatggcagggttgttggttttt
tttttttttttatggaccattcagaagattatctctgtccctttgaaatt
gttcactcattaatacatgtcatctttgagaattttaatatatttataat
cattctttaaaattctctttaggatttcttcaaagtctctgtcattatca
taattgtcctgagtggtagataaatgtgtccgaaaggcagaaagcttggg
tccacacatctatctaggtccagtgtggaaatataactaggaaacagaat
cttaaaggacattttaccttttgcttgtcagaacctggtcttagaacctt
atttatttgtatttaaatgtttattggttgtgggtgccagagccataagg
tcctgggagtctatgtctgtttgctcagtgtgctggaagtgagaagaagc
agagtatccagaggacttaggatctcttacctattttggcagagtactga
catggaatatagtcagcagttttatggattatctgagcctgtggatgaca
ccgagtaaaacaactgctgtcaacctgtacatatttatctatggaccata
gagaagggaactcactctgaagttactcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18639731_18640833
seq2: B6Ng01-115G07.g_67_1147

seq1  GAATTCTGATCTACCTCCTGAGTTCTGGGGTCAGAACTCTCCCTATAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTACCTCCTGAGTTCTGGGGTCAGAACTCTCCCTATAGGC  50

seq1  AGACTCTCCTCTGGCAAGGAATGTGCCCAGGGGTCTGGGTCTCAGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCCTCTGGCAAGGAATGTGCCCAGGGGTCTGGGTCTCAGCTCTG  100

seq1  CCTCCTGGCTGAGGATGAAGGCCTGAAGGAACCCTGACCAAGAAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGCTGAGGATGAAGGCCTGAAGGAACCCTGACCAAGAAGCTCTG  150

seq1  TTGCTTCTATCACCCATGTGCTCTCAGGTGATCAGGAGGTCCTGGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTATCACCCATGTGCTCTCAGGTGATCAGGAGGTCCTGGGTGTG  200

seq1  CCAGGGGTCCTGGAGTGTGGAGAGTCCTCTGGTGCCCTAGATGCCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGTCCTGGAGTGTGGAGAGTCCTCTGGTGCCCTAGATGCCCTTGG  250

seq1  CTGGGTTCATGCAGAAGATGGTGGGGCTGGCCCTGACCTCAATGGATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCATGCAGAAGATGGTGGGGCTGGCCCTGACCTCAATGGATCCC  300

seq1  AGCCTCTGGTTGGGCGGGGCTCTTTTGTCCCTGCTCCTGCTGGTACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGTTGGGCGGGGCTCTTTTGTCCCTGCTCCTGCTGGTACAAGA  350

seq1  CCCTCCATGATTCTTTGGAACTGATGTTTCGCTCCACTCACCTGTGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGATTCTTTGGAACTGATGTTTCGCTCCACTCACCTGTGATCC  400

seq1  CAAGGTAATCCTGAGGTCCTGTGGTGTGGAGAGCACTCTGGAGCCCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAATCCTGAGGTCCTGTGGTGTGGAGAGCACTCTGGAGCCCTTAG  450

seq1  TAGTGGCCTCTGCTGGGCTCAGAAGGAACATGGCAGGGTTGTTGGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCTCTGCTGGGCTCAGAAGGAACATGGCAGGGTTGTTGGTTTTT  500

seq1  TTTTTTTTTTTATGGACCATTCAGAAGATTATCTCTGTCCCTTTGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTATGGACCATTCAGAAGATTATCTCTGTCCCTTTGAAATT  550

seq1  GTTCACTCATTAATACATGTCATCTTTGAGAATTTTAATATATTTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTCATTAATACATGTCATCTTTGAGAATTTTAATATATTTATAAT  600

seq1  CATTCTTTAAAATTCTCTTTAGGATTTCTTCAAAGTCTCTGTCATTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAAAATTCTCTTTAGGATTTCTTCAAAGTCTCTGTCATTATCA  650

seq1  TAATTGTCCTGAGTGGTAGATAAATGTGTCCGAAAGGCAGAAAGCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCTGAGTGGTAGATAAATGTGTCCGAAAGGCAGAAAGCTTGGG  700

seq1  TCCACACATCTATCTAGGTCCAGTGTGGAAATATAACTAGGAAACAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACATCTATCTAGGTCCAGTGTGGAAATATAACTAGGAAACAGAAT  750

seq1  CTTAAAGGACATTTTACCTTTTGCTTGTCAGAACCTGGTCTTAGAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGACATTTTACCTTTTGCTTGTCAGAACCTGGTCTTAGAACCTT  800

seq1  ATTTATTTGTATTTAAATGTTTATTGGTTGTGGGTGCCAGAGCCATAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTATTTAAATGTTTATTGGTTGTGGGTGCCAGAGCCATAAGG  850

seq1  TCCTGGGAGTCTATGTCTGTTTGCTCAGTGTGCTGGAAGTGAGAAGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAGTCTATGTCTGTTTGCTCAGTGTGCTGGAAGTGAGAAGAAGC  900

seq1  AGAGTATCCAGAGGACTTAGGATCCCTTACCTATTCTGGCAGAGTACTGA  950
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  AGAGTATCCAGAGGACTTAGGATCTCTTACCTATTTTGGCAGAGTACTGA  950

seq1  CATGGAATATAGTCAGCAGTTTTTATGGATAATTCTGAGCCTGTTGGATG  1000
      ||||||||||||||||||| |||||||||| | |||||||||| ||||||
seq2  CATGGAATATAGTCAGCAG-TTTTATGGATTA-TCTGAGCCTG-TGGATG  997

seq1  GAACACCGAGTAAAAACAACTGCTGTACAAACCTGGTAACATTATTTTAA  1050
        ||||||||| ||||||||||||||   ||||||   ||| |||||  |
seq2  --ACACCGAGT-AAAACAACTGCTGT--CAACCTG--TACA-TATTT--A  1037

seq1  TCTATGGAACCCATAGTAGAAAGGGAGAACTCACTCTAGAAGAGTTACTC  1100
      ||||||||  |||||| ||||   | ||||||||||| ||  ||||||||
seq2  TCTATGGA--CCATAG-AGAA---GGGAACTCACTCT-GA--AGTTACTC  1078

seq1  ACT  1103
      |||
seq2  ACT  1081