BAC Information

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BAC

Clone NameB6Ng01-115K09
Chromosome1 (Build37)Y (Build37)
Map Location 146,870,213 - 146,871,387573,447 - 573,555
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877
Downstream geneLOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K09.bB6Ng01-115K09.g
ACCDH920859DH920860
length1,167295
definitionDH920859|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K09, 5' end.DH920860|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,870,213 - 146,871,387)(573,447 - 573,555)
sequence
gaattctctttgataatatttgaagattcttagtacaccaaataaaataa
aaaattaatgttcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgcgtgtgcgtgtgcgtgcgtgtgtgtgtgtgtgtttaatgtactt
ggatgttaatggtgtaaggaaatactaactttttcttactatttgaatat
tattttcttaggaagctaaaaacttcaattggtaaacatgcctcaggagc
ttgagatgagtgagaaagtccattgaaagaaatagcttagcacttgtttt
taaacttgagataactttgaggacaagcaatggttgacagtgatccagac
caaacaaggatttttcatgataagagactgaagcagaacatggggctggt
ggtactattgattggagattttgctaaatgaagaaagtcttatcatataa
ttggctctacagaataaaaagatataattaatcacaatcagaagaaagtt
ttaaatgaagaaatggtagagatgaaactgtaccttttattggagttgaa
ctagggatgatagtgtgaattaattttcttcaaaatagatgtatatagaa
atatctatgttccagataaaaaaaaaaaaattcttgacatgttgccaaaa
gacagagaatggtgatatgtctacagatttgagcaaaatttagtaccaag
ttactgtcttttgtaagcaattatacaatctgtgaggtgtagaatctctg
ctataatctatgaggtatctttaacaatcagacagctctagcattaggga
gtaaaagactgtgtgacctttggaaaattgtcttttactgtccaaaagga
aatcacccaggaagacatggataagtggagaaagccaagcaaattggaat
gttctaattatccaataaaatcaataactggagaaccatataatagacgg
gtgaatcattatagtctacgattaaaattatgaatctagaacattcggct
agtttgagataaatatgtgagtatattataatgagaacaggaaatctgtt
cccttttttattttaatttgtttaaatatgcttgagatttatatctttat
acaaatttttgacttggttatttctttccttcaaatttccctccacactc
taaacattgcttcttcc
tccttcgcctaggacgtgtcactccctgattggctgcagcccatcggccg
agttgacgtcacggggaaggcagagcacatggagtgaagaaccaccctcg
gcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgcc
atcttgtaatggcgaatgtgggcgcggctcccaacactagttggccatca
ttgggaagagaggccccttgatcttgcaaactttatatgccccagtacag
cagaatgccagggccaagaagtgggagtgggtgggtaggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_146870213_146871387
seq2: B6Ng01-115K09.b_49_1215 (reverse)

seq1  GGAAGAAGAGCAAATGTTT-GAGGTGGGAGGGAAATATGAAGGAAAGAAA  49
      ||||||||    ||||||| |||   |||||||||| |||||||||||||
seq2  GGAAGAAG---CAATGTTTAGAGTGTGGAGGGAAATTTGAAGGAAAGAAA  47

seq1  TAACAAAGTCAAAATATTTTGTATACAGATATAAAATCTCAAAGCATATA  99
      |||| ||||||||  | |||||||| |||||| ||||||| |||||||| 
seq2  TAACCAAGTCAAA--AATTTGTATAAAGATAT-AAATCTC-AAGCATATT  93

seq1  TAAACAAAATAAAAATAAAAAAGGGAACAGTATTCCTTGTCTCATTATAA  149
      ||||| |||| |||||||||||||||||||  |||||  ||||||||| |
seq2  TAAAC-AAATTAAAATAAAAAAGGGAACAGATTTCCTGTTCTCATTAT-A  141

seq1  ATATACTCACATATTTATCTC-AACTAGCAGAATGTTCTAGATTCATAAT  198
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  ATATACTCACATATTTATCTCAAACTAGCCGAATGTTCTAGATTCATAAT  191

seq1  TTTAATTCGTAGACTATAATTGATTCACCCGTCTATTTATATGGTTCT-C  247
      ||||| ||||||||||||| ||||||||||||||| |||||||||||| |
seq2  TTTAA-TCGTAGACTATAA-TGATTCACCCGTCTA-TTATATGGTTCTCC  238

seq1  AGTTATTGATTTTATTTGGATAA-TAGAACATTCCAATTTGCTTGGCTTT  296
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  AGTTATTGATTTTA-TTGGATAATTAGAACATTCCAATTTGCTTGGCTTT  287

seq1  CTCCACTTATCCATGTCTTCCTGGGTGATTTCCTTTTGGACAGTAAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTATCCATGTCTTCCTGGGTGATTTCCTTTTGGACAGTAAAAGA  337

seq1  CAATTTTCC-AAGGTCACACAGTCTTTTACTCCCTTAATGCTAGAGCTGT  395
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CAATTTTCCAAAGGTCACACAGTCTTTTACTCCC-TAATGCTAGAGCTGT  386

seq1  CTGATTGTTAAAGATACCTCATAGATTATAGCAGAGATTCTACACCTCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTTAAAGATACCTCATAGATTATAGCAGAGATTCTACACCTCAC  436

seq1  AGATTGTATAATTGCTTACAAAAGACAGTAACTTGGTACTAAA-TTTGCT  494
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATTGTATAATTGCTTACAAAAGACAGTAACTTGGTACTAAATTTTGCT  486

seq1  CAAATCTGTAGACATATCACCATTCTCTGTCTTTTGGCAACATGTCAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGTAGACATATCACCATTCTCTGTCTTTTGGCAACATGTCAAGA  536

seq1  ATTTTTTTTTTTTTATCTGGAACATAGATATTTCTATATACATCTATTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTTTATCTGGAACATAGATATTTCTATATACATCTATTTT  586

seq1  GAAGAAAATTAATTCACACTATCATCCCTAGTTCAACTCCAATAAAAGGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATTAATTCACACTATCATCCCTAGTTCAACTCCAATAAAAGGT  636

seq1  ACAGTTTCATCTCTACCATTTCTTCATTTAAAACTTTCTTCTGATTGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCATCTCTACCATTTCTTCATTTAAAACTTTCTTCTGATTGTGA  686

seq1  TTAATTATATCTTTTTATTCTGTAGAGCCAATTATATGATAAGACTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATATCTTTTTATTCTGTAGAGCCAATTATATGATAAGACTTTCT  736

seq1  TCATTTAGCAAAATCTCCAATCAATAGTACCACCAGCCCCATGTTCTGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGCAAAATCTCCAATCAATAGTACCACCAGCCCCATGTTCTGCT  786

seq1  TCAGTCTCTTATCATGAAAAATCCTTGTTTGGTCTGGATCACTGTCAACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTTATCATGAAAAATCCTTGTTTGGTCTGGATCACTGTCAACC  836

seq1  ATTGCTTGTCCTCAAAGTTATCTCAAGTTTAAAAACAAGTGCTAAGCTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGTCCTCAAAGTTATCTCAAGTTTAAAAACAAGTGCTAAGCTAT  886

seq1  TTCTTTCAATGGACTTTCTCACTCATCTCAAGCTCCTGAGGCATGTTTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAATGGACTTTCTCACTCATCTCAAGCTCCTGAGGCATGTTTAC  936

seq1  CAATTGAAGTTTTTAGCTTCCTAAGAAAATAATATTCAAATAGTAAGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAGTTTTTAGCTTCCTAAGAAAATAATATTCAAATAGTAAGAAA  986

seq1  AAGTTAGTATTTCCTTACACCATTAACATCCAAGTACATTAAACACACAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTATTTCCTTACACCATTAACATCCAAGTACATTAAACACACAC  1036

seq1  ACACACACGCACGCACACGCACACGCACACACACACACACACACACACAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCACGCACACGCACACGCACACACACACACACACACACACAC  1086

seq1  ACACACACACACACACCTGAACATTAATTTTTTATTTTATTTGGTGTACT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACCTGAACATTAATTTTTTATTTTATTTGGTGTACT  1136

seq1  AAGAATCTTCAAATATTATCAAAGAGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  AAGAATCTTCAAATATTATCAAAGAGAATTC  1167

seq1: chrY_573447_573555
seq2: B6Ng01-115K09.g_259_367

seq1  CTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTAT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGATCTTGCAAACTTTAT  50

seq1  ATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGT  100
      ||||||||||||||  |||  ||||||||||||||||||||  |||||||
seq2  ATGCCCCAGTACAGCAGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGT  100

seq1  AGGGTAGCA  109
      |||| ||||
seq2  AGGGGAGCA  109