BAC Information

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BAC

Clone NameB6Ng01-115K16
Chromosome1 (Build37)
Map Location 33,576,303 - 33,576,955
singlet/doubletsinglet
Overlap genePrim2
Upstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828, EG666108
Downstream gene1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K16.g
ACCDH920873
length688
definitionDH920873|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaacctgattctttgggtacgttacttatcctttgcttgagcgg
cctgtataaggtaccaagggtgagctaggaggctttctggggttacaaaa
aagtataccaagcaggaagggggtggccacctgggttttcagttgcactg
gaagatgttcagaatatgcaggatgaaaaacgactgactgtccttttact
aaaatgtaacttggctgtgcaccctcaaaataaacctggtccctccctta
acaaaactgaccagaacatataacggatcatggactcttttttaaaaatg
ctattagacgttcagattctaatggtttctcccacatctcagttactgtc
cttatgtaacaaatcctaattactaaattataagacaaaactaagaacaa
aactcacggctggatcggccccagggctggtgacacttggttaacctgac
tcactaattccttacagggattccgagaggtaaacctcttctagacaatg
ccccacaggcatgcccggaggcctgtcccttgtcaagatgacaatcaaga
ttaattatcagaatccctccctatatttatattcccaagtttacagggtg
ctacctttaacccagttaagtccatgcaatattggggagagggggtgtga
ttgaagactgaagtgtggacactatgcccctccttaga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_33576303_33576955
seq2: B6Ng01-115K16.g_67_717

seq1  GAATTCCAACGTTATTCTATGGGTACATTACTTATCATTTGCTTGAGCGG  50
      |||||||||| | ||||| ||||||| ||||||||| |||||||||||||
seq2  GAATTCCAACCTGATTCTTTGGGTACGTTACTTATCCTTTGCTTGAGCGG  50

seq1  CCTGTAAAAGGTACCAAGGGTGAGCTAGGAGGCTTTCTGGGGTTACAAAA  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATAAGGTACCAAGGGTGAGCTAGGAGGCTTTCTGGGGTTACAAAA  100

seq1  AAGTAGACAAAGCAGGAAGGGTGTGGCCCCATGGGTTTTCAGTTGCACTG  150
      ||||| || |||||||||||| |||||| | |||||||||||||||||||
seq2  AAGTATACCAAGCAGGAAGGGGGTGGCCACCTGGGTTTTCAGTTGCACTG  150

seq1  GAAGATGTTCTGAAGATGCTGGTTGTAAAAGGACTGAGTGTCCTTTTACT  200
      |||||||||| ||| |||| || || |||| |||||| ||||||||||||
seq2  GAAGATGTTCAGAATATGCAGGATGAAAAACGACTGACTGTCCTTTTACT  200

seq1  AAAATGTAACAGTGCTGTGGACCCGCAAAAGAAACCTAGTCCCAGCCTTA  250
      ||||||||||   |||||| |||| ||||| |||||| |||||  |||||
seq2  AAAATGTAACTTGGCTGTGCACCCTCAAAATAAACCTGGTCCCTCCCTTA  250

seq1  ACAAAACTGACCAGAACATATAACACAGGATGGACTCTTTTTTAAAAATG  300
      ||||||||||||||||||||||||  |  |||||||||||||||||||||
seq2  ACAAAACTGACCAGAACATATAACGGATCATGGACTCTTTTTTAAAAATG  300

seq1  CTATTAGACGTTCAGATTCTAATAAGTTTCTCCCACATCTCAGTTACTGT  350
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CTATTAGACGTTCAGATTCTAAT-GGTTTCTCCCACATCTCAGTTACTGT  349

seq1  CCTTATGTAACAAATCCTAATTACTAAATTATAAGACAAAACTAAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTAACAAATCCTAATTACTAAATTATAAGACAAAACTAAGAACA  399

seq1  AAACAGACGGCTGGCTCAGCCCAAGGGCTGTTGACGCTTGGTTAACCTAA  450
      ||||  |||||||| || |||| ||||||| |||| |||||||||||| |
seq2  AAACTCACGGCTGGATCGGCCCCAGGGCTGGTGACACTTGGTTAACCTGA  449

seq1  CTCGGTAATTCCTCACAGGGATTCCGAGAGGTAAACCTCTTCTAGACAAT  500
      |||  |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCACTAATTCCTTACAGGGATTCCGAGAGGTAAACCTCTTCTAGACAAT  499

seq1  GCCCCACAGGCATGCCCGGAGGCCTGTCCCTTGTCAAGATGACAATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAGGCATGCCCGGAGGCCTGTCCCTTGTCAAGATGACAATCAAG  549

seq1  ATTAATTATCAGAATCCCAAACCTATATTTATATACCCAAGTTTACAGGG  600
      ||||||||||||||||||   ||||||||||||| |||||||||||||||
seq2  ATTAATTATCAGAATCCC-TCCCTATATTTATATTCCCAAGTTTACAGGG  598

seq1  TGCTACCTTTAACCCAGTTAAGTCCATGCAATATTGGGGAGTGGGGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTACCTTTAACCCAGTTAAGTCCATGCAATATTGGGGAGAGGGGGTGT  648

seq1  GAT  653
      |||
seq2  GAT  651