BAC Information

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BAC

Clone NameB6Ng01-115L16
Chromosome1 (Build37)
Map Location 181,103,501 - 181,238,043
singlet/doubletdoublet
Overlap geneSmyd3
Upstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115L16.bB6Ng01-115L16.g
ACCDH920918DH920919
length844334
definitionDH920918|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L16, 5' end.DH920919|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,103,501 - 181,104,344)(181,237,710 - 181,238,043)
sequence
gaattcaggagggttcaggctgttcatcttctctttacacgtgcacccac
ttgagattggaatggggttcatccattgtttcacctctctcggataaaac
atcccaacattctctccagcccaatactttatttttcctggcagaaatct
acaaggttaatgcaaaaatctagaacctaaagaaagcaataatcagtgtt
tggccacattgggtccaatgcttgggactgtaacagttagtggattagtg
actggattagagcagtagtttctagccatattcctcaagcaccacaggta
gcaactcccacattcctcaacaacaggtggagggctgtggggttggggaa
gtgaggtagtacagccaggcccctaggggctcctctcctttcagaagatc
aatagctagctatatactcttcgcaatgacggaatggaattttctttcat
ttaaaaaataaaataaaataaaataaaaagggatatttgcaagaggaggg
gttgtccatttaaatactttgaaaacacacctttgtgggtttctaagtgt
ctctagatctccaaagttttgtaggctacacgccattgattctaatgtat
cttaatattcactgcccagaattttgtttgaaaatcacataaaacatcac
atgaatggcaagtaggtgcaagacagatggctgggctttttctacctttg
atgtccaggtgttgaagaactcgtggtagacaaacagaagcctaggtggg
aacaaacaactcagaatcctgcaaagagaaaagctcagatgttcccctct
ctcttccctcactgtggcttgggagggggctgggggggggggga
taataattacgtctttagagatcacaggaattctttaaccccctttaaag
ttactgagaaatcgcagagcagctctgtggggaggggtcacagttcatgt
ttcctttccttttctagaaacatttactaaaaattctaattatctgtcac
tttcagattaaaagagaaaccacacacagcctcatctgtgtaaatatata
tacatagattaaaatccttatgatactgaaaaaaaattgtataagtcctt
attttcccaagagaaaacttctgttttttccgattgcttttggatacatt
tttcttccttccttccttccttccttccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181103501_181104344
seq2: B6Ng01-115L16.b_47_890

seq1  GAATTCAGGAGGGTTCAGGCTGTTCATCTTCTCTTTACACGTGCACCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGGTTCAGGCTGTTCATCTTCTCTTTACACGTGCACCCAC  50

seq1  TTGAGATTGGAATGGGGTTCATCCATTGTTTCACCTCTCTCGGATAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTGGAATGGGGTTCATCCATTGTTTCACCTCTCTCGGATAAAAC  100

seq1  ATCCCAACATTCTCTCCAGCCCAATACTTTATTTTTCCTGGCAGAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAACATTCTCTCCAGCCCAATACTTTATTTTTCCTGGCAGAAATCT  150

seq1  ACAAGGTTAATGCAAAAATCTAGAACCTAAAGAAAGCAATAATCAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTAATGCAAAAATCTAGAACCTAAAGAAAGCAATAATCAGTGTT  200

seq1  TGGCCACATTGGGTCCAATGCTTGGGACTGTAACAGTTAGTGGATTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACATTGGGTCCAATGCTTGGGACTGTAACAGTTAGTGGATTAGTG  250

seq1  ACTGGATTAGAGCAGTAGTTTCTAGCCATATTCCTCAAGCACCACAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTAGAGCAGTAGTTTCTAGCCATATTCCTCAAGCACCACAGGTA  300

seq1  GCAACTCCCACATTCCTCAACAACAGGTGGAGGGCTGTGGGGTTGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCCACATTCCTCAACAACAGGTGGAGGGCTGTGGGGTTGGGGAA  350

seq1  GTGAGGTAGTACAGCCAGGCCCCTAGGGGCTCCTCTCCTTTCAGAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAGTACAGCCAGGCCCCTAGGGGCTCCTCTCCTTTCAGAAGATC  400

seq1  AATAGCTAGCTATATACTCTTCGCAATGACGGAATGGAATTTTCTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTAGCTATATACTCTTCGCAATGACGGAATGGAATTTTCTTTCAT  450

seq1  TTAAAAAATAAAATAAAATAAAATAAAAAGGGATATTTGCAAGAGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAAAATAAAATAAAATAAAAAGGGATATTTGCAAGAGGAGGG  500

seq1  GTTGTCCATTTAAATACTTTGAAAACACACCTTTGTGGGTTTCTAAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCATTTAAATACTTTGAAAACACACCTTTGTGGGTTTCTAAGTGT  550

seq1  CTCTAGATCTCCAAAGTTTTGTAGGCTACACGCCATTGATTCTAATGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATCTCCAAAGTTTTGTAGGCTACACGCCATTGATTCTAATGTAT  600

seq1  CTTAATATTCACTGCCCAGAATTTTGTTTGAAAATCACATAAAACATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTCACTGCCCAGAATTTTGTTTGAAAATCACATAAAACATCAC  650

seq1  ATGAATGGCAAGTAGGTGCAAGACAGATGGCTGGGCTTTTTCTACCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGCAAGTAGGTGCAAGACAGATGGCTGGGCTTTTTCTACCTTTG  700

seq1  ATGTCCAGGTGTTGAAGAACTCGTGGTAGACAAACAGAAGCCTAGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGTGTTGAAGAACTCGTGGTAGACAAACAGAAGCCTAGGTGGG  750

seq1  AACAAACAACTCAGAATCCTGCAAAGAGAAAAGCTCAGATGTTCCCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAACTCAGAATCCTGCAAAGAGAAAAGCTCAGATGTTCCCCTCT  800

seq1  CTCTTCCCTCACTGTGGCTTGGGAGGGGGCTGGGGGGGGGGGAA  844
      |||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTTCCCTCACTGTGGCTTGGGAGGGGGCTGGGGGGGGGGGGA  844

seq1: chr1_181237710_181238043
seq2: B6Ng01-115L16.g_76_409 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAATGTATCCAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAATGTATCCAAAAGCA  50

seq1  ATCGGAAAAAACAGAAGTTTTCTCTTGGGAAAATAAGGACTTATACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAAAAAACAGAAGTTTTCTCTTGGGAAAATAAGGACTTATACAATT  100

seq1  TTTTTTCAGTATCATAAGGATTTTAATCTATGTATATATATTTACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTATCATAAGGATTTTAATCTATGTATATATATTTACACAGA  150

seq1  TGAGGCTGTGTGTGGTTTCTCTTTTAATCTGAAAGTGACAGATAATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGTGTGTGGTTTCTCTTTTAATCTGAAAGTGACAGATAATTAGA  200

seq1  ATTTTTAGTAAATGTTTCTAGAAAAGGAAAGGAAACATGAACTGTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTAAATGTTTCTAGAAAAGGAAAGGAAACATGAACTGTGACCC  250

seq1  CTCCCCACAGAGCTGCTCTGCGATTTCTCAGTAACTTTAAAGGGGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACAGAGCTGCTCTGCGATTTCTCAGTAACTTTAAAGGGGGTTAA  300

seq1  AGAATTCCTGTGATCTCTAAAGACGTAATTATTA  334
      ||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTGTGATCTCTAAAGACGTAATTATTA  334