BAC Information

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BAC

Clone NameB6Ng01-115M19
Chromosome1 (Build37)
Map Location 135,044,668 - 135,179,113
singlet/doubletdoublet
Overlap genePlekha6
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneGolt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M19.bB6Ng01-115M19.g
ACCDH920970DH920971
length977826
definitionDH920970|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M19, 5' end.DH920971|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,044,668 - 135,045,500)(135,178,288 - 135,179,113)
sequence
gaattcctcaattccaccatatttaagtagtgtaggcactgtagttaatt
tcggtttttgtccgaagtcatttcttgggtctttccaataagattagtct
tgcacttggcagtaggtgatcacgcgttctttggtaacatgcttcagccc
ctctcccatgagcagctcagcttccatgcagtctggacaccagctctccc
tcaggcatccttggaacctctgacacggcaagaatagtcttgtcatggcc
ctccttcacaatctggtccacagcccgggtgaactttaagccagacacac
tggccaccttcaaggtagccacggctactctacatttatttattttgtgt
ttataggtcttttgcttgcatgtttgcctgcaccgtgtgtgtacagtgcc
caaagagaccagaagagggcatcaggtcccctgggaatggttatgagctg
ccatgggggtgctgagaattgaacctgggtcctctggaaaaggagccagt
gtacttaactgccaagccatctcttcagcccctaatttttttagattttg
agacagagttcatgttgcccaagttagtctccactcactacatagtcaaa
catgaccttgaacttgaccctcactcttcctcccacccgacaagaacaga
gattacaggctgtgccaccataccaggcatggtggtttgaataggaacag
ctcctatagactcatgtttgaatccttggccataaggagtggcactacta
agagctgtggccttgttggaggaagtgtgtcaccctatagggtggggctt
cgaggccgtatatatttaagctacatctatgtggtacatatctcctcctg
gctgcctttggatcacgatgtagaactctcagctcttctagcatcatgtg
tgcctgcatgttgccaggcctcatgccatgatgataatggactgaacctc
tgactgtaagccatccccgggtaaatg
gaattcagtaatcagtaatcctcagcgacacactgccccaaaggaatcct
gggacaaatgcagcctgtgggtgatgagcatactcgctcgctctctgggt
agaggcgctttggaatgaacaggaaggcaaacttgctgcctgcgcgtgcc
ctctgctgtaggggtgcccttgcagcaccccgcttctgcggtcttaggag
atatccaggtcagggcagaaagaaggggaggccaacagccacagcccctc
ccccccccccacacacttaccgtggtcgcctgtgacagctccacccggat
gttgataagttggttctgcagagactccttcttgtgcagcagcttctctg
ggtaggcgggctggctcccaaacatctccagctcctggtgggttcccatc
aaggcactttctaggctctcctgaagaaagatgagagatgacatgagctg
ccccgtgaccttttctagggtctttgacaacagatgcctgagcccctggt
agttcaatcagacaacttagcagaggttatcctcataggattactgtccc
tgggagacaagaagtctgaggaagacaaagacccaccagctttgtaagga
cagagacagacagcatcgcacaccgccacacccatgccagtcccacccac
aaaacaccccagccgctgctcaccttctctgcccgcagctgctgcaccag
ccgctcctgttcccttactaccttgttctgctcacacagcttgcccagca
gcttctgggggcccagaggaagaaagaagacgatgaacgatgtgggttga
tggggggcttgggaattgggttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135044668_135045500
seq2: B6Ng01-115M19.b_43_876

seq1  GAATTCCTCAATTCCACCATATTTAAGTAGTGTAGGCACTGTAGTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAATTCCACCATATTTAAGTAGTGTAGGCACTGTAGTTAATT  50

seq1  TCGGTTTTTGTCCGAAGTCATTTCTTGGGTCTTTCCAATAAGATTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTTTGTCCGAAGTCATTTCTTGGGTCTTTCCAATAAGATTAGTCT  100

seq1  TGCACTTGGCAGTAGGTGATCACGCGTTCTTTGGTAACATGCTTCAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGGCAGTAGGTGATCACGCGTTCTTTGGTAACATGCTTCAGCCC  150

seq1  CTCTCCCATGAGCAGCTCAGCTTCCATGCAGTCTGGACACCAGCTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCATGAGCAGCTCAGCTTCCATGCAGTCTGGACACCAGCTCTCCC  200

seq1  TCAGGCATCCTTGGAACCTCTGACACGGCAAGAATAGTCTTGTCATGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATCCTTGGAACCTCTGACACGGCAAGAATAGTCTTGTCATGGCC  250

seq1  CTCCTTCACAATCTGGTCCACAGCCCGGGTGAACTTTAAGCCAGACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCACAATCTGGTCCACAGCCCGGGTGAACTTTAAGCCAGACACAC  300

seq1  TGGCCACCTTCAAGGTAGCCACGGCTACTCTACATTTATTTATTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACCTTCAAGGTAGCCACGGCTACTCTACATTTATTTATTTTGTGT  350

seq1  TTATAGGTCTTTTGCTTGCATGTTTGCCTGCACCGTGTGTGTACAGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTCTTTTGCTTGCATGTTTGCCTGCACCGTGTGTGTACAGTGCC  400

seq1  CAAAGAGACCAGAAGAGGGCATCAGGTCCCCTGGGAATGGTTATGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACCAGAAGAGGGCATCAGGTCCCCTGGGAATGGTTATGAGCTG  450

seq1  CCATGGGGGTGCTGAGAATTGAACCTGGGTCCTCTGGAAAAGGAGCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGGTGCTGAGAATTGAACCTGGGTCCTCTGGAAAAGGAGCCAGT  500

seq1  GTACTTAACTGCCAAGCCATCTCTTCAGCCCCTAATTTTTTTAGATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAACTGCCAAGCCATCTCTTCAGCCCCTAATTTTTTTAGATTTTG  550

seq1  AGACAGAGTTCATGTTGCCCAAGTTAGTCTCCACTCACTACATAGTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTCATGTTGCCCAAGTTAGTCTCCACTCACTACATAGTCAAA  600

seq1  CATGACCTTGAACTTGACCCTCACTCTTCCTCCCACCCGACAAGAACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTGAACTTGACCCTCACTCTTCCTCCCACCCGACAAGAACAGA  650

seq1  GATTACAGGCTGTGCCACCATACCAGGCATGGTGGTTTGAATAGGAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGGCTGTGCCACCATACCAGGCATGGTGGTTTGAATAGGAACAG  700

seq1  CTCCTATAGACTCATGTTTGAATCCTTGGCCATAGGGAGTGGCACTACTA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCCTATAGACTCATGTTTGAATCCTTGGCCATAAGGAGTGGCACTACTA  750

seq1  AGAGCTGTGGCCTTGTTGGAGGAAGTGTGTCACCCTATAGG--TGGGCTT  798
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  AGAGCTGTGGCCTTGTTGGAGGAAGTGTGTCACCCTATAGGGTGGGGCTT  800

seq1  CGAGGCCATATATATTTAAGCTACATCTAGTGTGG  833
      ||||||| ||||||||||||||||||||| |||||
seq2  CGAGGCCGTATATATTTAAGCTACATCTA-TGTGG  834

seq1: chr1_135178288_135179113
seq2: B6Ng01-115M19.g_67_892 (reverse)

seq1  TGCCAACCCAATTCCCAAG-CCCCCATCAACCCACATCCTTCATCGTCTT  49
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TGCCAACCCAATTCCCAAGCCCCCCATCAACCCACATCGTTCATCGTCTT  50

seq1  CTTTCTTTCCTCTGGGCCCCCAGAAGCTGCTGGGCAAGCTGTGTGAGCAG  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTC-TTCCTCTGGGCCCCCAGAAGCTGCTGGGCAAGCTGTGTGAGCAG  99

seq1  AACAAGGTAGTAAGGGAACAGGAGCGGCTGGTGCAGCAGCTGCGGGCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTAGTAAGGGAACAGGAGCGGCTGGTGCAGCAGCTGCGGGCAGA  149

seq1  GAAGGTGAGCAGCGGCTGGGGTGTTTTGTGGGTGGGACTGGCATGGGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGCAGCGGCTGGGGTGTTTTGTGGGTGGGACTGGCATGGGTGT  199

seq1  GGCGGTGTGCGATGCTGTCTGTCTCTGTCCTTACAAAGCTGGTGGGTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGTGCGATGCTGTCTGTCTCTGTCCTTACAAAGCTGGTGGGTCTT  249

seq1  TGTCTTCCTCAGACTTCTTGTCTCCCAGGGACAGTAATCCTATGAGGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTCAGACTTCTTGTCTCCCAGGGACAGTAATCCTATGAGGATA  299

seq1  ACCTCTGCTAAGTTGTCTGATTGAACTACCAGGGGCTCAGGCATCTGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTAAGTTGTCTGATTGAACTACCAGGGGCTCAGGCATCTGTTG  349

seq1  TCAAAGACCCTAGAAAAGGTCACGGGGCAGCTCATGTCATCTCTCATCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACCCTAGAAAAGGTCACGGGGCAGCTCATGTCATCTCTCATCTT  399

seq1  TCTTCAGGAGAGCCTAGAAAGTGCCTTGATGGGAACCCACCAGGAGCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGAGAGCCTAGAAAGTGCCTTGATGGGAACCCACCAGGAGCTGG  449

seq1  AGATGTTTGGGAGCCAGCCCGCCTACCCAGAGAAGCTGCTGCACAAGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTGGGAGCCAGCCCGCCTACCCAGAGAAGCTGCTGCACAAGAAG  499

seq1  GAGTCTCTGCAGAACCAACTTATCAACATCCGGGTGGAGCTGTCACAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTGCAGAACCAACTTATCAACATCCGGGTGGAGCTGTCACAGGC  549

seq1  GACCACGGTAAGTGTGTGGGGGGGGGGGAGGGGCTGTGGCTGTTGGCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGGTAAGTGTGTGGGGGGGGGGGAGGGGCTGTGGCTGTTGGCCTC  599

seq1  CCCTTCTTTCTGCCCTGACCTGGATATCTCCTAAGACCGCAGAAGCGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTCTGCCCTGACCTGGATATCTCCTAAGACCGCAGAAGCGGGG  649

seq1  TGCTGCAAGGGCACCCCTACAGCAGAGGGCACGCGCAGGCAGCAAGTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAGGGCACCCCTACAGCAGAGGGCACGCGCAGGCAGCAAGTTTG  699

seq1  CCTTCCTGTTCATTCCAAAGCGCCTCTACCCAGAGAGCGAGCGAGTATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTTCATTCCAAAGCGCCTCTACCCAGAGAGCGAGCGAGTATGC  749

seq1  TCATCACCCACAGGCTGCATTTGTCCCAGGATTCCTTTGGGGCAGTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCCACAGGCTGCATTTGTCCCAGGATTCCTTTGGGGCAGTGTGT  799

seq1  CGCTGAGGATTACTGATTACTGAATTC  826
      |||||||||||||||||||||||||||
seq2  CGCTGAGGATTACTGATTACTGAATTC  826