BAC Information

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BAC

Clone NameB6Ng01-115P06
Chromosome1 (Build37)
Map Location 52,770,988 - 52,972,479
singlet/doubletdoublet
Overlap gene2210010L05Rik, Inpp1, Hibch
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik
Downstream gene1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115P06.bB6Ng01-115P06.g
ACCDH921079DH921080
length1,0261,122
definitionDH921079|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P06, 5' end.DH921080|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,971,821 - 52,972,479)(52,770,988 - 52,772,123)
sequence
gaattccatccttcatgccctggtctaatatctcctatcttacaaatgaa
tctcacagtctccgcttctgtttctttcttgaaattaaaagctgtttacg
tgtaatatcgtcatttcttcacagcccatttgcttcatcatttatagctc
taatggccacctctgccactctggaagggcttgccaaaactcactaattg
attataaactatcctctcggtgttaccttgtttctcatagacttgagcag
gttatattttcattttcatacaattttcataatttatttcctttgtgatc
caaacatcactcagtagtgtgcagcttagtttccaagattccgtatattt
tctatcacagttgattattagttttattccactgtggttagaaaaagctt
aaggaattacttcaattttatttgttgagacttgtattggatcacaaaat
gtggcctacttgggggaaaaattccataggctactgaaaagaatgtgttc
tctatagtgtgtgggttcaatattctgcagatagcaggcccacttgatgt
ttttagacacaatactttttggctttttttttaggtaatatgtcctttgc
tgaaagtggggtaataaggcaaattgctactaatgtgttagagggtggtt
ggctttaagtctagtagcatttgttttgtgaagttaggtgcagcaagctt
gttgaatgcatgtttagagctataatgtcttttcaatggattgttccctc
aggagtatgatgcgaccttctttgtagcttctgattagttttaatttgaa
gtctcaaatgaaaagtctgttctttcccgtttgtgtggaatgactggctg
caggcgttctttcactctcacatctccacctctactggcaatgcttgttt
cttggaagcagcaaaaatgctgggtcctgttttagaagcgtctgctgtgt
ctgtgactggggagctgaaatcactgacattcacctattgctgacatgtg
ggtactgattcctgtgtactgctgat
gaattccaaagcacaacttggccaccgactgctgcaatttattgccagca
gagaaaaggggaaaacagtgcaagccagactcagagtcctagcattttta
tctactacactctccctccggcagtcagttcaaccctagcattttccaga
agagctgattgcagaagcattcacacagcatcaatccagcagatctttta
agatcaggattgcttttgtatctgctacccactcagccaatgccatgaaa
cacacatacaaacttggctggatagcagcccacaggaaagggcactgaag
cacatcagagggaatgacggcctttggaatcttcttccttctgaggctct
gtgacactgagggctgagacaagctgagagacaatgcccaatctcactgt
taatccactttccagctgggctctctaggtcctcagcactgtgcccaggc
ctgaagagctgccccacagacttgcacagcaattgagcctcccctcagaa
cttgccaccttggaaagcccttcccaggcccctgacaaaacttgtctgta
agatgacaaagagatccataatttgtggttgcatatttaggttaattaac
tcctagtggtgtatttacatgttaattagaagcacagtgctttgtcacca
ttattattactaacctgtcatggtttcataaggattaactcaatcttcac
aacagttcccagaatatatacggccactttcctgctgtacagatgagaaa
actgaggcatagcagagagctagccccagctcatatccagaataaacaga
agaaatgggtttcaatttcagagagtctgtgcttttagtgggtgctattt
ctaaatgtactgtggagctattaaataagatgccaaatgcacactctttt
gcctcaaagccatgctttatggtaagtaaaaatagttctttaactcaaag
aaacattaaataatgtgaaatattaagtggcatagagacagtaatgaata
gagctacatcacactgcataataatacataacaattatagacataggagt
ctgagtaagagttgcaagctggtgaagaaaatgaagggcttgcaggtact
ttaactgcagactgtatgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52971821_52972479
seq2: B6Ng01-115P06.b_47_705 (reverse)

seq1  CTTAAAGCCAACCACCCTCTAACACATTAGTAGCAATTTGCCTTATTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCCAACCACCCTCTAACACATTAGTAGCAATTTGCCTTATTACC  50

seq1  CCACTTTCAGCAAAGGACATATTACCTAAAAAAAAAGCCAAAAAGTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCAGCAAAGGACATATTACCTAAAAAAAAAGCCAAAAAGTATTG  100

seq1  TGTCTAAAAACATCAAGTGGGCCTGCTATCTGCAGAATATTGAACCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAAACATCAAGTGGGCCTGCTATCTGCAGAATATTGAACCCACA  150

seq1  CACTATAGAGAACACATTCTTTTCAGTAGCCTATGGAATTTTTCCCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGAGAACACATTCTTTTCAGTAGCCTATGGAATTTTTCCCCCAA  200

seq1  GTAGGCCACATTTTGTGATCCAATACAAGTCTCAACAAATAAAATTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCACATTTTGTGATCCAATACAAGTCTCAACAAATAAAATTGAAG  250

seq1  TAATTCCTTAAGCTTTTTCTAACCACAGTGGAATAAAACTAATAATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTTAAGCTTTTTCTAACCACAGTGGAATAAAACTAATAATCAAC  300

seq1  TGTGATAGAAAATATACGGAATCTTGGAAACTAAGCTGCACACTACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGAAAATATACGGAATCTTGGAAACTAAGCTGCACACTACTGAG  350

seq1  TGATGTTTGGATCACAAAGGAAATAAATTATGAAAATTGTATGAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTGGATCACAAAGGAAATAAATTATGAAAATTGTATGAAAATGA  400

seq1  AAATATAACCTGCTCAAGTCTATGAGAAACAAGGTAACACCGAGAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAACCTGCTCAAGTCTATGAGAAACAAGGTAACACCGAGAGGATA  450

seq1  GTTTATAATCAATTAGTGAGTTTTGGCAAGCCCTTCCAGAGTGGCAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAATCAATTAGTGAGTTTTGGCAAGCCCTTCCAGAGTGGCAGAGG  500

seq1  TGGCCATTAGAGCTATAAATGATGAAGCAAATGGGCTGTGAAGAAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTAGAGCTATAAATGATGAAGCAAATGGGCTGTGAAGAAATGAC  550

seq1  GATATTACACGTAAACAGCTTTTAATTTCAAGAAAGAAACAGAAGCGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACACGTAAACAGCTTTTAATTTCAAGAAAGAAACAGAAGCGGAG  600

seq1  ACTGTGAGATTCATTTGTAAGATAGGAGATATTAGACCAGGGCATGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGATTCATTTGTAAGATAGGAGATATTAGACCAGGGCATGAAGG  650

seq1  ATGGAATTC  659
      |||||||||
seq2  ATGGAATTC  659

seq1: chr1_52770988_52772123
seq2: B6Ng01-115P06.g_69_1190

seq1  GAATTCCAAAGCACAACTTGGCCACCGACTGCTGCAATTTATTGCCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCACAACTTGGCCACCGACTGCTGCAATTTATTGCCAGCA  50

seq1  GAGAAAAGGGGAAAACAGTGCAAGCCAGACTCAGAGTCCTAGCATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGGAAAACAGTGCAAGCCAGACTCAGAGTCCTAGCATTTTTA  100

seq1  TCTACTACACTCTCCCTCCGGCAGTCAGTTCAACCCTAGCATTTTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACACTCTCCCTCCGGCAGTCAGTTCAACCCTAGCATTTTCCAGA  150

seq1  AGAGCTGATTGCAGAAGCATTCACACAGCATCAATCCAGCAGATCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATTGCAGAAGCATTCACACAGCATCAATCCAGCAGATCTTTTA  200

seq1  AGATCAGGATTGCTTTTGTATCTGCTACCCACTCAGCCAATGCCATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGATTGCTTTTGTATCTGCTACCCACTCAGCCAATGCCATGAAA  250

seq1  CACACATACAAACTTGGCTGGATAGCAGCCCACAGGAAAGGGCACTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACAAACTTGGCTGGATAGCAGCCCACAGGAAAGGGCACTGAAG  300

seq1  CACATCAGAGGGAATGACGGCCTTTGGAATCTTCTTCCTTCTGAGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGAGGGAATGACGGCCTTTGGAATCTTCTTCCTTCTGAGGCTCT  350

seq1  GTGACACTGAGGGCTGAGACAAGCTGAGAGACAATGCCCAATCTCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACTGAGGGCTGAGACAAGCTGAGAGACAATGCCCAATCTCACTGT  400

seq1  TAATCCACTTTCCAGCTGGGCTCTCTAGGTCCTCAGCACTGTGCCCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACTTTCCAGCTGGGCTCTCTAGGTCCTCAGCACTGTGCCCAGGC  450

seq1  CTGAAGAGCTGCCCCACAGACTTGCACAGCAATTGAGCCTCCCCTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGCTGCCCCACAGACTTGCACAGCAATTGAGCCTCCCCTCAGAA  500

seq1  CTTGCCACCTTGGAAAGCCCTTCCCAGGCCCCTGACAAAACTTGTCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACCTTGGAAAGCCCTTCCCAGGCCCCTGACAAAACTTGTCTGTA  550

seq1  AGATGACAAAGAGATCCATAATTTGTGGTTGCATATTTAGGTTAATTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAAAGAGATCCATAATTTGTGGTTGCATATTTAGGTTAATTAAC  600

seq1  TCCTAGTGGTGTATTTACATGTTAATTAGAAGCACAGTGCTTTGTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGGTGTATTTACATGTTAATTAGAAGCACAGTGCTTTGTCACCA  650

seq1  TTATTATTACTAACCTGTCATGGTTTCATAAGGATTAACTCAATCTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTACTAACCTGTCATGGTTTCATAAGGATTAACTCAATCTTCAC  700

seq1  AACAGTTCCCAGAATATATACGGCCACTTTCCTGCTGTACAGATGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCCCAGAATATATACGGCCACTTTCCTGCTGTACAGATGAGAAA  750

seq1  ACTGAGGCATAGCAGAGAGCTAGCCCCAGCTCATATCCAGAATAAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCATAGCAGAGAGCTAGCCCCAGCTCATATCCAGAATAAACAGA  800

seq1  AGAAATGGGTTTCAATTTCAGAGAGTCTGTGCTTTTAGTGGGTGCTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGGTTTCAATTTCAGAGAGTCTGTGCTTTTAGTGGGTGCTATTT  850

seq1  CTAAATGTACTGTGGAGCTATTAAATAAGATGCCAAATGCACACTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTACTGTGGAGCTATTAAATAAGATGCCAAATGCACACTCTTTT  900

seq1  GCCTCAAAGCCATGCTTTATGGTAAGT-AAAATAGTCCTTAAACTCAAAG  949
      ||||||||||||||||||||||||||| |||||||| ||| |||||||||
seq2  GCCTCAAAGCCATGCTTTATGGTAAGTAAAAATAGTTCTTTAACTCAAAG  950

seq1  AAACATTAAATAATGTGAAAATATTAAGTGGCAATAGAGAACAGTAATGA  999
      ||||||||||||||||| |||||||||||||| |||||| ||||||||| 
seq2  AAACATTAAATAATGTG-AAATATTAAGTGGC-ATAGAG-ACAGTAATG-  996

seq1  AATAGAAGCTACATCACACTGCATAATAAATTAACAATAACAAATTATAG  1049
      ||||| |||||||||||||||||||||||  ||   ||||| ||||||||
seq2  AATAG-AGCTACATCACACTGCATAATAA--TA--CATAAC-AATTATAG  1040

seq1  ACAATAGGAGTTCTGAGTAAAGAGTTTGCAAGCTTGTG-AGAAAATGAAG  1098
      || ||||||| ||||||| ||||| ||||||||| ||| |||||||||||
seq2  AC-ATAGGAG-TCTGAGT-AAGAG-TTGCAAGCTGGTGAAGAAAATGAAG  1086

seq1  GGCTTGCAAGGTACTTTTACTTGCAGACTGTATGATTC  1136
      ||||||| ||||||||| || |||||||||||||||||
seq2  GGCTTGC-AGGTACTTTAAC-TGCAGACTGTATGATTC  1122