BAC Information

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BAC

Clone NameB6Ng01-116B01
Chromosome1 (Build37)
Map Location 6,582,005 - 6,582,523
singlet/doubletsinglet
Overlap genenone
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116B01.bB6Ng01-116B01.g
ACCDH921161DH921162
length1,221513
definitionDH921161|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B01, 5' end.DH921162|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttaactctgaaccccatttttaatggggttatttgaatt
tctggagtccagcttcttgagctctttgtatatattggatattagtctcc
tatctcatttaggataggtaaagatcctttcccgatctgttggtgaactt
tttgtcatattgacagtgtcttgtcttacagaagctttgcaattttatga
ggtcccttttgtcaattcttgatcttatagcacaagccattgctgttcta
ttcagtaatttttcccctgtgcccatttctttgaggcttttccctacttt
ctcctctattaatttcagtgtctctggtcttatgtggaggtctttgatcc
acttagacttgagctttgtacaaggagataggaatggatcaattggcatt
cttctacatggtaactgccatgtagttttgccagcaccatttgttgaaca
tgctgtctgttttcaactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtggattcatttctgggtcttcaattctattccattg
atctacctgtctgtcactgtaccagtaccatgcagtttttatcacaattg
ctctgtagtacagcttaatgtcaggcatggtgattccaccagaggttctt
ttgttgttgagaatggtttttgctatcctaggatttttatttttccagat
gaattttcaaattgccctttctatctcagtgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttgacaggatagccatt
tttactatattaatcctgccaacccatgaacatgggagatctttccatct
tctatgatcttcttcaatttctgtcttcatagacttgatgttcttatcat
acagatcttttacttccttagttagagtcacaccaaggtattttatatta
tttgtgactattgtgagggtgttgtttccctaatttctttctcagttcgt
ttagctttgtgtagagaaggccattgggtttgtttgagtgattttaatcc
agctagtgcactgaagctggttatcgaattagagtctctttgttggaatt
tttgggtgcttaaatatactataatcatctgtaatggaaagtgactcctc
ctccatttgatctgaatcctttgtgtgcaatgctctgctgaacctctcag
atctatgtcagatgtgaacag
cacaccctgcctcaattccagttatacttttgagatactctgatgctatg
atttacttcttgcacacatgaacatgaagaaatcttcagcctttcttctg
gtcattatcctgcatgctcacggccccaccctgcatgagtgctagctagc
actgacaaggaatagctcaaggatagtactgtgtttatagcctaacatga
cttcatttttacttcagagcataaaggatggatcatctccattaattctg
tgctcataaaggctacaatgtgcttcattccacttcactctgacccatct
tcttcccaatcttctgataagtaaggctccttccacctagaaaaaggaga
tgtacattttctgctgtcttcctatagacaacttgaaatctgtcactgtt
tcctggaacccattttatttatatagggagaaaggagaggaaaagagaag
gaaagcaagaaaaaaaaaaggaaaggaaaggaaaggaagggaagggaggg
gaggggacgggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6582005_6582523
seq2: B6Ng01-116B01.g_68_586 (reverse)

seq1  GTCCCGTCCCCTCCCCTCCCTTCCCTTCCTTTCCTTTCCTTTCCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTCCCCTCCCCTCCCTTCCCTTCCTTTCCTTTCCTTTCCTTTTTT  50

seq1  TTTTCTTGCTTTCCTTCTCTTTTCCTCTCCTTTCTCCCTATATAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGCTTTCCTTCTCTTTTCCTCTCCTTTCTCCCTATATAAATAAA  100

seq1  ATGGGTTCCAGGAAACAGTGACAGATTTCAAGTTGTCTATAGGAAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCCAGGAAACAGTGACAGATTTCAAGTTGTCTATAGGAAGACAG  150

seq1  CAGAAAATGTACATCTCCTTTTTCTAGGTGGAAGGAGCCTTACTTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGTACATCTCCTTTTTCTAGGTGGAAGGAGCCTTACTTATCAG  200

seq1  AAGATTGGGAAGAAGATGGGTCAGAGTGAAGTGGAATGAAGCACATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGGAAGAAGATGGGTCAGAGTGAAGTGGAATGAAGCACATTGTA  250

seq1  GCCTTTATGAGCACAGAATTAATGGAGATGATCCATCCTTTATGCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGAGCACAGAATTAATGGAGATGATCCATCCTTTATGCTCTGA  300

seq1  AGTAAAAATGAAGTCATGTTAGGCTATAAACACAGTACTATCCTTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATGAAGTCATGTTAGGCTATAAACACAGTACTATCCTTGAGCT  350

seq1  ATTCCTTGTCAGTGCTAGCTAGCACTCATGCAGGGTGGGGCCGTGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTCAGTGCTAGCTAGCACTCATGCAGGGTGGGGCCGTGAGCAT  400

seq1  GCAGGATAATGACCAGAAGAAAGGCTGAAGATTTCTTCATGTTCATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATAATGACCAGAAGAAAGGCTGAAGATTTCTTCATGTTCATGTGT  450

seq1  GCAAGAAGTAAATCATAGCATCAGAGTATCTCAAAAGTATAACTGGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGTAAATCATAGCATCAGAGTATCTCAAAAGTATAACTGGAATT  500

seq1  GAGGCAGGGTGTGGAATTC  519
      |||||||||||||||||||
seq2  GAGGCAGGGTGTGGAATTC  519