BAC Information

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BAC

Clone NameB6Ng01-116B04
Chromosome1 (Build37)
Map Location 56,667,760 - 56,668,999
singlet/doubletsinglet
Overlap genenone
Upstream gene9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116B04.bB6Ng01-116B04.g
ACCDH921167DH921168
length1,2321,202
definitionDH921167|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B04, 5' end.DH921168|Mus musculus domesticus DNA, BAC clone: B6Ng01-116B04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtggatggacagccaagaagaaaaaggcattgctgagaggg
actgacttgaatgagtgacatgtgaacatgataacaggacttttccttct
gtcctcaaactgaaaagcatactccctcactaaagactgcatctaaattg
gtgtttagctgtccgacacgccctggtggttagagtccttctcttctctg
gtttttgaagtttctggctcacacaggaagtgaaatgagcgctcttcaca
ttgtttaaatgaacaatagaatccaaagtgctaagcaatgtattaaccga
ataagccactagaacacaatttgctcacaaactcggggtacccgcccgag
agagaagctgcagaggatgacactctttccccccacagccattgcacttc
atctgtgagttctgttgctcagggaaaccacaacagcatctgcaaagtca
acatcgcatagactttgactttgtgatcctgtggggaaaacaagaactct
tcacaccttttagcatctacattacataaaaaagcataatattttatatt
ttttaaatctttttttgtagcagaaaatgatgctccagaggttttcataa
ctgccatcagaaacaatctggaagaggaggctcctgagatgatctcaggg
tgggcaggcagcacctcgccttctaaaaatggagtatttatactttttgg
ttagagtcaatccaacctcatagaaaccagcacatagtaggaatcgaatt
aattatacttctgctgctcactattacatcacctgtgagactcagtgaga
ggctcttttctaggacattacaaaaatgacagacagagaagtgagtgggg
tgggaagcagaccgaagatcacaaaccctacagtaccatgccaaatttct
ctctagaaagaaaatctggtagataatttcttttctaataactgaacatg
tcccactgtggtaaagtcaagttattttaagatgctttggtgtagaggat
gtggtaggttgtttgtaggtatttgcggtactttagtggagcaacaacta
tgtgcatgcctctagaggcagagctctagggcaggtgtcttctctaattt
cactcttcattctctcctcaactaaagctcatggaattcagtcacatcca
gcctgctaggttttggttctcggactggatataggatgtccacttaccta
gtttttttcctcctggagacggggatgattgt
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttatttcttacatcttcaggagccagggtgcaggaagcaag
agagagagaaaacgaaaccccgtccctcttaaggagcattctccttcgcc
tcggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagcacaagtagtcataagatacccttggcacatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacagatggggtctgtctttggccaag
aattcaccaatgagccagactggctgaacaatgagtcctaggagtcctcc
tgtctctgcttctgtagctaggattacagatgcacaccacgaccggtctt
ttaaatatatataatttcatgtgcattagtgttttgcctgcatgggtctc
tgcgagggtgtcagatcccttggaactggagttacagagagttatgatct
gaaggtgtaggtgctgggaattgaagccgggtcctctggaagaacagcca
gtgccgttaaccacggagccaacactctagccccaagctgtctttttaaa
atctgggttctgggtatctgaactgctctcacgtgcatagcaagcatttt
actggatgggccatccatgcccccagaccctttcagttgttgttttaaaa
aaaaatgaacttttagcacattattaaatttgactcatatatgtagaaca
gagctgtccattatatttttctgacactataaaatatttatgtccatgct
gttccgcatggtagtcactccacatgtgcaaaccagaacagaatatgata
gtatgccaattttccatgttacaatgccccttgtagccatcatgcatatt
gtttttgtttgaaataccagtgcgaagatcctggaatatcgtcccttggt
acatgccagcttacaacaaagggagctccagagtctactgagtgtgaata
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56667760_56668999
seq2: B6Ng01-116B04.b_46_1277

seq1  GAATTCATAGTGGATGGACAGCCAAGAAGAAAAAGGCATTGCTGAGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGGATGGACAGCCAAGAAGAAAAAGGCATTGCTGAGAGGG  50

seq1  ACTGACTTGAATGAGTGACATGTGAACATGATAACAGGACTTTTCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTGAATGAGTGACATGTGAACATGATAACAGGACTTTTCCTTCT  100

seq1  GTCCTCAAACTGAAAAGCATACTCCCTCACTAAAGACTGCATCTAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAAACTGAAAAGCATACTCCCTCACTAAAGACTGCATCTAAATTG  150

seq1  GTGTTTAGCTGTCCGACACGCCCTGGTGGTTAGAGTCCTTCTCTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGCTGTCCGACACGCCCTGGTGGTTAGAGTCCTTCTCTTCTCTG  200

seq1  GTTTTTGAAGTTTCTGGCTCACACAGGAAGTGAAATGAGCGCTCTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAAGTTTCTGGCTCACACAGGAAGTGAAATGAGCGCTCTTCACA  250

seq1  TTGTTTAAATGAACAATAGAATCCAAAGTGCTAAGCAATGTATTAACCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAATGAACAATAGAATCCAAAGTGCTAAGCAATGTATTAACCGA  300

seq1  ATAAGCCACTAGAACACAATTTGCTCACAAACTCGGGGTACCCGCCCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCACTAGAACACAATTTGCTCACAAACTCGGGGTACCCGCCCGAG  350

seq1  AGAGAAGCTGCAGAGGATGACACTCTTTCCCCCCACAGCCATTGCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTGCAGAGGATGACACTCTTTCCCCCCACAGCCATTGCACTTC  400

seq1  ATCTGTGAGTTCTGTTGCTCAGGGAAACCACAACAGCATCTGCAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGTTCTGTTGCTCAGGGAAACCACAACAGCATCTGCAAAGTCA  450

seq1  ACATCGCATAGACTTTGACTTTGTGATCCTGTGGGGAAAACAAGAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCATAGACTTTGACTTTGTGATCCTGTGGGGAAAACAAGAACTCT  500

seq1  TCACACCTTTTAGCATCTACATTACATAAAAAAGCATAATATTTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTTTTAGCATCTACATTACATAAAAAAGCATAATATTTTATATT  550

seq1  TTTTAAATCTTTTTTTGTAGCAGAAAATGATGCTCCAGAGGTTTTCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTTTTTTTGTAGCAGAAAATGATGCTCCAGAGGTTTTCATAA  600

seq1  CTGCCATCAGAAACAATCTGGAAGAGGAGGCTCCTGAGATGATCTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCAGAAACAATCTGGAAGAGGAGGCTCCTGAGATGATCTCAGGG  650

seq1  TGGGCAGGCAGCACCTCGCCTTCTAAAAATGGAGTATTTATACTTTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGCAGCACCTCGCCTTCTAAAAATGGAGTATTTATACTTTTTGG  700

seq1  TTAGAGTCAATCCAACCTCATAGAAACCAGCACATAGTAGGAATCGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCAATCCAACCTCATAGAAACCAGCACATAGTAGGAATCGAATT  750

seq1  AATTATACTTCTGCTGCTCACTATTACATCACCTGTGAGACTCAGTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTTCTGCTGCTCACTATTACATCACCTGTGAGACTCAGTGAGA  800

seq1  GGCTCTTTTCTAGGACATTACAAAAATGACAGACAGAGAAGTGAGTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTTCTAGGACATTACAAAAATGACAGACAGAGAAGTGAGTGGGG  850

seq1  TGGGAAGCAGACCGAAGATCACAAACCCTACAGTACCATGCCAAATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCAGACCGAAGATCACAAACCCTACAGTACCATGCCAAATTTCT  900

seq1  CTCTAGAAAGAAAATCTGGTAGATAATTTCTTTTCTAATAAACTGAACAT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTAGAAAGAAAATCTGGTAGATAATTTCTTTTCTAAT-AACTGAACAT  949

seq1  GTCCCACTGTGGTAAAGTCAAGTTATTTTAAAGATGCTTT-GTGTAAGAG  999
      ||||||||||||||||||||||||||||| |||||||||| |||| ||||
seq2  GTCCCACTGTGGTAAAGTCAAGTTATTTT-AAGATGCTTTGGTGT-AGAG  997

seq1  GATGTTGGTAGG-TGTTTGTAGGTATTTGCCGGTACGTGAGTGGAGCACA  1048
      |||| ||||||| |||||||||||||||| |||||| | ||||||||| |
seq2  GATG-TGGTAGGTTGTTTGTAGGTATTTG-CGGTACTTTAGTGGAGCA-A  1044

seq1  CAACTATGTGCATGCCTCTAGAGGCCAGAGCTCTAGGCCAGGTGTCTTCC  1098
      |||||||||||||||||||||||| |||||||||||| ||||||||||| 
seq2  CAACTATGTGCATGCCTCTAGAGG-CAGAGCTCTAGGGCAGGTGTCTTCT  1093

seq1  TCAATATCACTCTCCATCTCTC-CCTCAAACTAAAGCTCATGG-ATTCAG  1146
        ||| ||||||| ||| |||| |||| ||||||||||||||| ||||||
seq2  CTAATTTCACTCTTCAT-TCTCTCCTC-AACTAAAGCTCATGGAATTCAG  1141

seq1  TCAACAATCCCAGCTGCTGGTTTTTGTTCCTCCAGCATTGAATTATAGGG  1196
      |||   ||||   ||||| | ||||| | |||  | | || | |||||| 
seq2  TCA--CATCCAGCCTGCTAGGTTTTGGTTCTC--GGACTGGA-TATAGG-  1185

seq1  ACATG-CCACTAAACTAGTTTTTTTCCCCCT---GAGGGGGATG-TTGT  1240
        ||| ||||| | ||||||||||||| |||   || ||||||| ||||
seq2  --ATGTCCACTTACCTAGTTTTTTTCCTCCTGGAGACGGGGATGATTGT  1232