BAC Information

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BAC

Clone NameB6Ng01-116H21
Chromosome1 (Build37)
Map Location 7,412,041 - 7,412,903
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H21.bB6Ng01-116H21.g
ACCDH921476DH921477
length1,2131,003
definitionDH921476|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H21, 5' end.DH921477|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacacagcaaaagcaatatacagcaaacca
gtagccaacatcaaactaaacggagggaaacttgaagcaatccaactaaa
atcagggactagacaaggctgcccactctctccctgctagaagtcctagc
cagagcaattagactgcaaaaggaggtcaaaggtatacaaagtacaaatg
aaaaggtcagtaggtcacgctttgcagatgatataatatccttaagtgac
ccccaaaattccaccagagaactcctaaacctgagaaagaacttcagcaa
agtggctggatataaaattaactcaaacgaatcagtagcctttctccact
caaaggataaatagcatgagaaagaaattagaaaaatatacccttcacaa
tattcacaaataatattacataccttattgtgactctaaccaagccagtg
aaagatctgtatgacaacaatttcaagtctctgaagaaagaaatcgaaga
actcaaatgatggaaagatctcccatgctcatggattggcaggattaata
tagtaaaaatggccatcttaccaaaaagcaatctacagattcctgatcaa
aattccagctcaattctttatagagttagaaagaaaaatttgcaaattta
tttggaataacaaaaaacccagaatattaaaaactattctcaacaattaa
agaacttctgggggaatcaccatccctgactgtattagttagggttctct
agagtcatagaacttatggatagtctctatatagtaaagggatttattga
tgacttacagtctgcagtccagtttccaacaatggttcagtagtagctgt
gaatgaaagtcaaaggatctagcagttattcattcccacacggcaagcag
gcgaagggaaaaggatctttcttcatctctccctaaacatatgaaatatt
atgtcttacctatatatgtaaactctgatacatttgattttcttttcatc
tccatatctcacttgaatgttcatgtaatgcatgcacatatacacctgaa
agtataatatttataaatacataaaactacctcaaaatcgtttacccgtt
tcatcgttttctcactatagtgcctgtcattcagtcctgcttcatctcag
ggatgcagcgatctaccagagtgggcctagtttcagtcttcacttctcac
gagtggaaaaaag
gaattctgtaatttcatgggtagcccatagtctacagccacaagtgattt
ctgtggttcaagacccaggccagattgggggcagatttccttcttctttg
gggcttctgtcattttctcttaatgtcttcaacatattggataagatcca
tcacagtacaaaagaccatggactgtactgttgccatgcttcctcccatg
atgataatggattgaacttctggtactgtaagtcagtcctcattaaatgt
ttttctttataagagttgtgttggtcaaggtgtatctctgcagcaacgga
aacactaagacaagaagttttatgaaaatgagaaatttttaataaatcac
cactttatttattatatattttatttagggttagtattgatgtgatgaaa
caccatgaccaaaagcaacttgtgaagagagtgtttatttcatttgcagt
cccaccacatgacagtttatcattaaaagcagttgaggacaggcactcaa
gcagtgggaccctggaggcaggatctgattcagagaccgtggaggagtgc
tcttcactggcatacttcccatggatttctcagcctgccaggccaggggt
ggtctcatctacaataactagatccttctacatcaaccagtgttatgaaa
atgacctacagatttgcctagggctcaatttttatgaaggggttttctca
actgccattctctcctctcagatgaaatttgacatctgacctcttgccaa
tttgacacagaaacatacatcatttttcatttataatctctcctttctaa
ttttatttcctaagatggcatgctaatattaatgtcacattatgaatcat
aaataaatttaaaagttccacaggctttagcaatttaaacacaccaaatt
tcaatcactttaaaatatttagtctttttaaaactcaaagtatttttaaa
gtccaagtctctcaatttttggaattctttaaaatcaaattatattaaac
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7412041_7412903
seq2: B6Ng01-116H21.g_68_933

seq1  GAATTCTGTAATTTCATGGGTAGCCCATAGTCTACAGCCACAAGTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATTTCATGGGTAGCCCATAGTCTACAGCCACAAGTGATTT  50

seq1  CTGTGGTTCAAGACCCAGGCCAGATTGGGGGCAGATTTCCTTCTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTCAAGACCCAGGCCAGATTGGGGGCAGATTTCCTTCTTCTTTG  100

seq1  GGGCTTCTGTCATTTTCTCTTAATGTCTTCAACATATTGGATAAGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTGTCATTTTCTCTTAATGTCTTCAACATATTGGATAAGATCCA  150

seq1  TCACAGTACAAAAGACCATGGACTGTACTGTTGCCATGCTTCCTCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTACAAAAGACCATGGACTGTACTGTTGCCATGCTTCCTCCCATG  200

seq1  ATGATAATGGATTGAACTTCTGGTACTGTAAGTCAGTCCTCATTAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATGGATTGAACTTCTGGTACTGTAAGTCAGTCCTCATTAAATGT  250

seq1  TTTTCTTTATAAGAGTTGTGTTGGTCAAGGTGTATCTCTGCAGCAACGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATAAGAGTTGTGTTGGTCAAGGTGTATCTCTGCAGCAACGGA  300

seq1  AACACTAAGACAAGAAGTTTTATGAAAATGAGAAATTTTTAATAAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAGACAAGAAGTTTTATGAAAATGAGAAATTTTTAATAAATCAC  350

seq1  CACTTTATTTATTATATATTTTATTTAGGGTTAGTATTGATGTGATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATTTATTATATATTTTATTTAGGGTTAGTATTGATGTGATGAAA  400

seq1  CACCATGACCAAAAGCAACTTGTGAAGAGAGTGTTTATTTCATTTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCAAAAGCAACTTGTGAAGAGAGTGTTTATTTCATTTGCAGT  450

seq1  CCCACCACATGACAGTTTATCATTAAAAGCAGTTGAGGACAGGCACTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACATGACAGTTTATCATTAAAAGCAGTTGAGGACAGGCACTCAA  500

seq1  GCAGTGGGACCCTGGAGGCAGGATCTGATTCAGAGACCGTGGAGGAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGACCCTGGAGGCAGGATCTGATTCAGAGACCGTGGAGGAGTGC  550

seq1  TCTTCACTGGCATACTTCCCATGGATTTCTCAGCCTGCCAGGCCAGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGGCATACTTCCCATGGATTTCTCAGCCTGCCAGGCCAGGGGT  600

seq1  GGTCTCATCTACAATAACTAGATCCTTCTACATCAACCAGTGTTATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATCTACAATAACTAGATCCTTCTACATCAACCAGTGTTATGAAA  650

seq1  ATGACCTACAGATTTGCCTAGGGCTCAA-TTTTATGAAGGGGTTTTCTCA  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGACCTACAGATTTGCCTAGGGCTCAATTTTTATGAAGGGGTTTTCTCA  700

seq1  ACTGCCATTCTCTCCTCTCAGATGAAATTTGACATCTGACCTCTTGCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATTCTCTCCTCTCAGATGAAATTTGACATCTGACCTCTTGCCAA  750

seq1  TTTGACACAGAAACATACATCATTTTTCATTTATAATCTCTCCTTTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACAGAAACATACATCATTTTTCATTTATAATCTCTCCTTTCTAA  800

seq1  TTT--ATTCCTAAGATGGCATGCTAATATTAATGTCACATTATGAATCAT  847
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCCTAAGATGGCATGCTAATATTAATGTCACATTATGAATCAT  850

seq1  AAATAAATTTAAAAGT  863
      ||||||||||||||||
seq2  AAATAAATTTAAAAGT  866