BAC Information

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BAC

Clone NameB6Ng01-116I10
Chromosome1 (Build37)
Map Location 121,301,530 - 121,443,934
singlet/doubletdoublet
Overlap geneInhbb, Ralb, Tmem185b
Upstream geneClasp1, Tcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778
Downstream geneEpb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I10.bB6Ng01-116I10.g
ACCDH921501DH921502
length9241,097
definitionDH921501|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I10, 5' end.DH921502|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,301,530 - 121,302,451)(121,442,832 - 121,443,934)
sequence
gaattcctgagggcacagctggccttggatggtgttcaaatgcatttttg
tcttgagtgacagggaggaaggaaggagggaggagagactccagggcccc
agtccagcttgcccttgaatttgctaagtttactcttcttgtcttccagc
tgctgtgtgaccttgagggagtcaagtagtgtctctgggcctccctctct
agcagccagtagaaaggttagataaaataagataagaaccttgcaagagg
actcaagccacaggatggttgcaaggccatcttgccaggctacacttgaa
gcctaccaaaggtgctatacaaggtgatactggaagtcaagcctgatggt
gcatgctagggtcagaatcctagaccctcgggagggagactttgaaaaca
cagctcagggccccatgtcactgggccatgttttccctcagaggcaattt
gatgtgagttctggatctcagacattcaagaaaacttgtgggtctgcctg
cttcccagtctacgtacagaagcccctagacttggacacatgtacctaca
catacagagagagagagagagagagagtgtgtgtatgtttctgtgaatcc
atctctttggctcctatccgacccatccccagttcccccacccagccgtc
catgtcaggaaatccagacactcaagtattgaaattgctgaaggctggag
gaattttgttttgaaaggcatgttctttaactttagcttacttatttact
aattctcatgtagcccaggctagcctccaatgcacgggaggatgatctca
aacttctgatctttctaaccagaacaagacagacacgtgccattatacac
cattcacgttgaccctagggtttgaactcagggcttcatgcacacaaggg
aagggctataccaactgagtggtt
gaattcttactagtcagaatatttgctagtgacttggttaggattcactt
gaatcccagtaaaaagaaatcctatgtcctactgtcaagtcctaagctta
gaagtacatattgagtgacatattttccctgacagattagacactgttac
atgtttcctgtgctgttacagtagcagtactctgctcctttgagaatggt
agtgtctaatgagacaggcctgagggcgcctgtggaagcagtagaggcag
ggcaagtccatgagacagtgagaatgctgacagagtgaggctgggtaaga
aggcaacaggcagagttaggccaagtcaggaagatgggtagctgccggcc
gtgtgggtttatggcacaatggagatagggccaaaagactggcctgctac
aaacctagggagggagagagggatccgggcaaggttcgtattgtgtccct
ggctggggtagggacttggcatggcagtttccagtaagatgaagattcag
ttaggagtcctaggctccacctcagcacttagaaagtacatgtgagggag
gaatctggatactgacagcttctgggtagcagctcctttcaacacagagg
actcacagttatctcacccctctcctcagcagatggtctccttctcattc
cactttgctttgagaaatactctttacagtcctgctggcggactagggta
cttgcttttgcacaggcttagctgtcctgggcatgtcaggggctgagatc
tccgagttgttactagcatctactgcttgtttttctcagttctggctaaa
gcttgggcctctcttctcttaactgagccccagaaaactgctgtctcttg
ctcgattgctaggcactcaactgatgaaaaagtttatttttttctttcct
ccctctttctttgtttctttccttttttctgtgtagctctggctgtcctg
gaacttactctatagacaaggctggtctcaaaatagagatcctcctgctt
ctgcctcttgaggtgcttcattaaggctatgctactacaccttggaacta
gtttctagaaagtttcttgtcttttcatttgcagtatcatgttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121301530_121302451
seq2: B6Ng01-116I10.b_45_967

seq1  GAATTCCTGAGGGCACAGCTGGCCTTGGATGGTGTTCAAATGCATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGGCACAGCTGGCCTTGGATGGTGTTCAAATGCATTTTTG  50

seq1  TCTTGAGTGACAGGGAGGAAGGAAGGAGGGAGGAGAGACTCCAGGGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGACAGGGAGGAAGGAAGGAGGGAGGAGAGACTCCAGGGCCCC  100

seq1  AGTCCAGCTTGCCCTTGAATTTGCTAAGTTTACTCTTCTTGTCTTCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTTGCCCTTGAATTTGCTAAGTTTACTCTTCTTGTCTTCCAGC  150

seq1  TGCTGTGTGACCTTGAGGGAGTCAAGTAGTGTCTCTGGGCCTCCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGACCTTGAGGGAGTCAAGTAGTGTCTCTGGGCCTCCCTCTCT  200

seq1  AGCAGCCAGTAGAAAGGTTAGATAAAATAAGATAAGAACCTTGCAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTAGAAAGGTTAGATAAAATAAGATAAGAACCTTGCAAGAGG  250

seq1  ACTCAAGCCACAGGATGGTTGCAAGGCCATCTTGCCAGGCTACACTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCCACAGGATGGTTGCAAGGCCATCTTGCCAGGCTACACTTGAA  300

seq1  GCCTACCAAAGGTGCTATACAAGGTGATACTGGAAGTCAAGCCTGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCAAAGGTGCTATACAAGGTGATACTGGAAGTCAAGCCTGATGGT  350

seq1  GCATGCTAGGGTCAGAATCCTAGACCCTCGGGAGGGAGACTTTGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGGGTCAGAATCCTAGACCCTCGGGAGGGAGACTTTGAAAACA  400

seq1  CAGCTCAGGGCCCCATGTCACTGGGCCATGTTTTCCCTCAGAGGCAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGGCCCCATGTCACTGGGCCATGTTTTCCCTCAGAGGCAATTT  450

seq1  GATGTGAGTTCTGGATCTCAGACATTCAAGAAAACTTGTGGGTCTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAGTTCTGGATCTCAGACATTCAAGAAAACTTGTGGGTCTGCCTG  500

seq1  CTTCCCAGTCTACGTACAGAAGCCCCTAGACTTGGACACATGTACCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTCTACGTACAGAAGCCCCTAGACTTGGACACATGTACCTACA  550

seq1  CATACAGAGAGAGAGAGAGAGAGAGAGTGTGTGTATGTTTCTGTGAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGAGAGAGAGAGAGAGAGAGTGTGTGTATGTTTCTGTGAATCC  600

seq1  ATCTCTTTGGCTCCTATCCGACCCATCCCCAGTTCCCCCACCCAGCCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTGGCTCCTATCCGACCCATCCCCAGTTCCCCCACCCAGCCGTC  650

seq1  CATGTCAGGAAATCCAGACACTCAAGTATTGAAATTGCTGAAGGCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGAAATCCAGACACTCAAGTATTGAAATTGCTGAAGGCTGGAG  700

seq1  GAATTTTGTTTCTGAAGGCATGTTCTTTAACTTTAGCTTACTTATTTACT  750
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTTTTGAAAGGCATGTTCTTTAACTTTAGCTTACTTATTTACT  750

seq1  AATTCTCATGTAGCCCAGGCTAGCCTCCAATGCACGGGAGGATGATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATGTAGCCCAGGCTAGCCTCCAATGCACGGGAGGATGATCTCA  800

seq1  AACTTCTGATCTTTCTAACCAGAACAAGACAGACACGTGCCATTATACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGATCTTTCTAACCAGAACAAGACAGACACGTGCCATTATACAC  850

seq1  CATTCACG-TGACCCTAGGGTTTGAACTCAGGGCTTCATGCACACAAGGC  899
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CATTCACGTTGACCCTAGGGTTTGAACTCAGGGCTTCATGCACACAAGGG  900

seq1  AAGGGCTATACCAACTGAGTGGT  922
      |||||||||||||||||||||||
seq2  AAGGGCTATACCAACTGAGTGGT  923

seq1: chr1_121442832_121443934
seq2: B6Ng01-116I10.g_67_1163 (reverse)

seq1  AATGAACATGATACCTGCCAAATGAAAAGACAAGAAGCTTTCTTAGAAAC  50
      ||||||||||||| ||| |||||||||||||||||| ||||| |||||||
seq2  AATGAACATGATA-CTG-CAAATGAAAAGACAAGAAACTTTC-TAGAAAC  47

seq1  TATGTTCCCAGGTGTAGTGGCATAGCCTTTAATGAAGCA-CTCAGGAGGC  99
      || ||||| ||||||||| |||||||| ||||||||||| |||| |||||
seq2  TA-GTTCCAAGGTGTAGTAGCATAGCC-TTAATGAAGCACCTCAAGAGGC  95

seq1  AGAGGCAGGAGGATCTCTGATTTTGAGACCAGCCTGGTCTATAGAGTAAG  149
      ||| |||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AGAAGCAGGAGGATCTCT-ATTTTGAGACCAGCCTTGTCTATAGAGTAAG  144

seq1  TTCCAGGACAGCCAGAGCTACACAGAAAAAAAGGAAAGAAACAAAGAAAG  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGAGCTACACAG-AAAAAAGGAAAGAAACAAAGAAAG  193

seq1  AAGGAAGGAAAGAAAAAAATAAACTTTTTCATCAGTTGAGTGCCTAGCAA  249
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGGGAGGAAAGAAAAAAATAAACTTTTTCATCAGTTGAGTGCCTAGCAA  242

seq1  TCGAGCAAGGGACAGCAGTTTTCTGGGGCTCAGTTAAGAGAAGAGAGGCC  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCAAGAGACAGCAGTTTTCTGGGGCTCAGTTAAGAGAAGAGAGGCC  292

seq1  CAAGCTTTAGCCAGAACTGAGAAAAACAAGCAGTAGATGCTAGTAACAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTAGCCAGAACTGAGAAAAACAAGCAGTAGATGCTAGTAACAAC  342

seq1  TCGGAGATCTCAGCCCCTGACATGCCCAGGACAGCTAAGCCTGTGC-AAA  398
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCGGAGATCTCAGCCCCTGACATGCCCAGGACAGCTAAGCCTGTGCAAAA  392

seq1  GCAAGTACCCTAGTCCGCCAGCAGGACTGTAAAGAGTATTTCTCAAAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTACCCTAGTCCGCCAGCAGGACTGTAAAGAGTATTTCTCAAAGCA  442

seq1  AAGTGGAATGAGAAGGAGACCATCTGCTGAGGAGAGGGGTGAGATAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAATGAGAAGGAGACCATCTGCTGAGGAGAGGGGTGAGATAACTG  492

seq1  TGAGTCCTCTGTGTTGAAAGGAGCTGCTACCCAGAAGCTGTCAGTATCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTCTGTGTTGAAAGGAGCTGCTACCCAGAAGCTGTCAGTATCCA  542

seq1  GATTCCTCCCTCACATGTACTTTCTAAGTGCTGAGGTGGAGCCTAGGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCCTCACATGTACTTTCTAAGTGCTGAGGTGGAGCCTAGGACT  592

seq1  CCTAACTGAATCTTCATCTTACTGGAAACTGCCATGCCAAGTCCCTACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGAATCTTCATCTTACTGGAAACTGCCATGCCAAGTCCCTACCC  642

seq1  CAGCCAGGGACACAATACGAACCTTGCCCGGATCCCTCTCTCCCTCCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGACACAATACGAACCTTGCCCGGATCCCTCTCTCCCTCCCTA  692

seq1  GGTTTGTAGCAGGCCAGTCTTTTGGCCCTATCTCCATTGTGCCATAAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGCAGGCCAGTCTTTTGGCCCTATCTCCATTGTGCCATAAACC  742

seq1  CACACGGCCGGCAGCTACCCATCTTCCTGACTTGGCCTAACTCTGCCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCCGGCAGCTACCCATCTTCCTGACTTGGCCTAACTCTGCCTGT  792

seq1  TGCCTTCTTACCCAGCCTCACTCTGTCAGCATTCTCACTGTCTCATGGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTACCCAGCCTCACTCTGTCAGCATTCTCACTGTCTCATGGAC  842

seq1  TTGCCCTGCCTCTACTGCTTCCACAGGCGCCCTCAGGCCTGTCTCATTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGCCTCTACTGCTTCCACAGGCGCCCTCAGGCCTGTCTCATTAG  892

seq1  ACACTACCATTCTCAAAGGAGCAGAGTACTGCTACTGTAACAGCACAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCATTCTCAAAGGAGCAGAGTACTGCTACTGTAACAGCACAGGA  942

seq1  AACATGTAACAGTGTCTAATCTGTCAGGGAAAATATGTCACTCAATATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAACAGTGTCTAATCTGTCAGGGAAAATATGTCACTCAATATGT  992

seq1  ACTTCTAAGCTTAGGACTTGACAGTAGGACATAGGATTTCTTTTTACTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGCTTAGGACTTGACAGTAGGACATAGGATTTCTTTTTACTGG  1042

seq1  GATTCAAGTGAATCCTAACCAAGTCACTAGCAAATATTCTGACTAGTAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGTGAATCCTAACCAAGTCACTAGCAAATATTCTGACTAGTAAG  1092

seq1  AATTC  1103
      |||||
seq2  AATTC  1097