BAC Information

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BAC

Clone NameB6Ng01-116M19
Chromosome1 (Build37)18 (Build37)
Map Location 85,055,044 - 85,055,58122,311,573 - 22,312,259
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317
Downstream geneLOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M19.bB6Ng01-116M19.g
ACCDH921708DH921709
length1,061689
definitionDH921708|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M19, 5' end.DH921709|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,055,044 - 85,055,581)(22,311,573 - 22,312,259)
sequence
gaattccttgatcgacttagacttgagctttatacaaggagataagaatg
gatcaattttcattcttctacatgataaccaccagttgttccagcaccat
ttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtc
aaagatcaagtgaccataggtgtatgggtttatttctgggtcttctattc
tattccattgatctaccttcctgtcactgtaccagtaccatgaagttttt
atcacaattgctctgtagtacagcttgaggtcagggattccaccagagtt
tcttttattgttgagaatcgtttttgctatcctaggcttttgttattcca
gatgaatttgtaaattgccctttctaactctgtgaataattgagttggat
ttttgttggggattgcattgaatctgtagattgcttttggcaagatggcc
atttttactatattaatcctgccaatccataaacatgacagatctttcca
tcttctgagatcttcttcaatttctttcttcagagatttgaagttcttat
catacagatctttcacttccatagttagagtcaaaccaagatattttata
ttatttgtaactactgagaagggtgttgtttccctaattttttttcgcag
cctgtttatcctttgtgttgagaaaggacactgatttgttttagttaatt
ttatatctagctactaagctgaagctgtttatcaggtttaggagttctct
ggtggaatttttagtgtcacttatatatactatcatgtaatctgcaaata
gtaatatttttacttctcctttccaatttgtatcccctcgatctcttttt
gttgtctaattgctctgactaggacttcaagtactatattgaataggtag
ggagaaagtaggcagccttgtctagtccctgatttagtgggattgcttca
ggcttctctccatttggtttgatgatggctactggtttggtgataattgt
tttgttatgtttatttatgggcttgaattcctgatttttccaagaattta
tcatgaatggg
gaattccaggacaaggaagcaggaatgggtgggtaagtgagcaaggggta
gtgagcaaggagagggcaaaggggataggagtgtttttggaggggaaatg
aggaaaggcaataaaatttgaaatgcaaataaagaaaatatctaattttt
aaaaagaagacattgaggtagtcattggcaaaagaacacattttttgtat
tctttttgcaatcttctgtgaatccatacttatttgaaaatgaagtactt
attatacagtcataaatgaaaaagaaaaaccattgagtactataaaatta
ttatactagaagaaatgaaggaatacactctaaatgatccatgtagaaag
atgcatcacctgggcttggcatggaaatgtagttcagttggtagagtgtt
gttctagtgcccacaaagctctgggttctaattcaagtagtattacataa
ttaggtgtgatggcacacatctataaactagcacttggaacataaaggca
aataagtagaagtttaaggtcaccctcagctatataccaatcactaaaaa
aataagctaataaatcacaataatatgatcacatatgtgtctaatgatca
tatatgaacatgtatgatatatacatatatatttatatacataaatattt
tatgtatgtgcataaatgtggtcttttgctactttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85055044_85055581
seq2: B6Ng01-116M19.b_572_1105 (reverse)

seq1  CCCATTCATGATAAAAGTTC-TGGAAAGATCAGGAATTCAAGGCCCATAC  49
      |||||||||||||||  ||| |||||| ||||||||||||| ||||||| 
seq2  CCCATTCATGATAAA--TTCTTGGAAAAATCAGGAATTCAA-GCCCATAA  47

seq1  CTAAACATGATAAAAGTAATCTACAGCAAACCAGTAGCCAACATCAAAGT  99
       ||||||| | ||||  |||   || |||||||||||||| |||||||  
seq2  ATAAACATAACAAAA-CAATTATCACCAAACCAGTAGCCATCATCAAACC  96

seq1  AAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTTGACAAG  149
      ||||||||||||||  |||||||||||||| |||||||||||| ||||||
seq2  AAATGGAGAGAAGCCTGAAGCAATCCCACT-AAATCAGGGACTAGACAAG  145

seq1  GCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTCGAAGTATTAGCC  199
      |||||| ||||||||||||||| ||||| |||||||| |||||  ||| |
seq2  GCTGCCTACTTTCTCCCTACCTATTCAATATAGTACTTGAAGTCCTAGTC  195

seq1  AGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGA  249
      ||||||||| |||||||||| |||||| ||||||||||||||||||||||
seq2  AGAGCAATTAGACAACAAAAAGAGATCGAGGGGATACAAATTGGAAAGGA  245

seq1  GGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTG  299
       ||||| ||||||| ||| ||||||||| | |||||||||||||||||||
seq2  -GAAGTAAAAATATTACTATTTGCAGATTACATGATAGTATATATAAGTG  294

seq1  ACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGT  349
      || |||||||||||||||||||||||||||||||||||||||||||| | 
seq2  ACACTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCAGC  344

seq1  GAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTA  399
        ||||||| ||||||||||||||| |||||| ||| || |||||||| |
seq2  TTAGTAGCTAGATATAAAATTAACTAAAACAAATCAGTGTCCTTTCTCAA  394

seq1  CACAAAGAATAAACAGGCTGAG-AAAGAAATTAGGGAAACAACACCCTTC  448
      ||||||| |||||||||||| | ||| |||||||||||||||||||||||
seq2  CACAAAGGATAAACAGGCTGCGAAAAAAAATTAGGGAAACAACACCCTTC  444

seq1  TCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGA  498
      ||| |||| |||||||||||||||||||| ||  |||||||||||| |||
seq2  TCAGTAGTTACAAATAATATAAAATATCTTGGTTTGACTCTAACTATGGA  494

seq1  AGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAG  538
      ||||||||||||||||||||| |||||||| |||||||||
seq2  AGTGAAAGATCTGTATGATAAGAACTTCAAATCTCTGAAG  534

seq1: chr18_22311573_22312259
seq2: B6Ng01-116M19.g_70_758

seq1  GAATTCCAGGACAAGGAAGCAGGAATGGGTGGGTAAGTGAGCAAGGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAAGGAAGCAGGAATGGGTGGGTAAGTGAGCAAGGGGTA  50

seq1  GTGAGCAAGGAGAGGGCAAAGGGGATAGGAGTGTTTTTGGAGGGGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAGGAGAGGGCAAAGGGGATAGGAGTGTTTTTGGAGGGGAAATG  100

seq1  AGGAAAGGCAATAAAATTTGAAATGCAAATAAAGAAAATATCTAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCAATAAAATTTGAAATGCAAATAAAGAAAATATCTAATTTTT  150

seq1  AAAAAGAAGACATTGAGGTAGTCATTGGCAAAAGAACACATTTTTTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAGACATTGAGGTAGTCATTGGCAAAAGAACACATTTTTTGTAT  200

seq1  TCTTTTTGCAATCTTCTGTGAATCCATACTTATTTGAAAATGAAGTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCAATCTTCTGTGAATCCATACTTATTTGAAAATGAAGTACTT  250

seq1  ATTATACAGTCATAAATGAAAAAGAAAAACCATTGAGTACTATAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAGTCATAAATGAAAAAGAAAAACCATTGAGTACTATAAAATTA  300

seq1  TTATACTAGAAGAAATGAAGGAATACACTCTAAATGATCCATGTAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTAGAAGAAATGAAGGAATACACTCTAAATGATCCATGTAGAAAG  350

seq1  ATGCATCACCTGGGCTTGGCATGGAAATGTAGTTCAGTTGGTAGAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCACCTGGGCTTGGCATGGAAATGTAGTTCAGTTGGTAGAGTGTT  400

seq1  GTTCTAGTGCCCACAAAGCTCTGGGTTCTAATTCAAGTAGTATTACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTGCCCACAAAGCTCTGGGTTCTAATTCAAGTAGTATTACATAA  450

seq1  TTAGGTGTGATGGCACACATCTATAAACTTAGCACTTGGAACATAAAGGC  500
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTAGGTGTGATGGCACACATCTATAAAC-TAGCACTTGGAACATAAAGGC  499

seq1  AAATAAGTAGAAGTTTAAGGTCACCCTCAGCTATATACCAATCACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAGAAGTTTAAGGTCACCCTCAGCTATATACCAATCACTAAAA  549

seq1  AAATAAGCTAATAAATCACAATAATATGATCACATATGTGTCTAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTAATAAATCACAATAATATGATCACATATGTGTCTAATGATC  599

seq1  ATATATGAACATGTATGATATATACATATATA-TTATATACATAAATA-T  648
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  ATATATGAACATGTATGATATATACATATATATTTATATACATAAATATT  649

seq1  TTATGTATGTGCATAAATGTGGTC-TTTGCTACTTTGTGG  687
      |||||||||||||||||||||||| |||||||||||||||
seq2  TTATGTATGTGCATAAATGTGGTCTTTTGCTACTTTGTGG  689