BAC Information

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BAC

Clone NameB6Ng01-116O12
Chromosome1 (Build37)
Map Location 174,163,383 - 174,364,046
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Upstream geneFcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O12.bB6Ng01-116O12.g
ACCDH921786DH921787
length1,114862
definitionDH921786|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O12, 5' end.DH921787|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,362,938 - 174,364,046)(174,163,383 - 174,164,242)
sequence
gaattctcagtctttatgcttcaatggcttctcataacaattttattctt
tctctgaggtgaggggatgctggacctgtaacttcactcaccaaagcagc
aatttcccagagggctttgctcttctacccatgggctgtgttctaaaact
gcccccgcccccaggagatagaagtccgaggccagagatcatactgtaca
tacctgtgattacatttaatttctaaattaggcccagtaagaggttagca
gttaataatgaaatataacgattaatatattatcacatagattctgtgaa
tgtggcccctcgaaaatacctcgttgtatcctcaccctctctcataaagg
atgccctgtgatgctgcactttgtggtgtccgaattgccagcatcactgc
tcatgtgcttcaggaccactgctcagtaagacgaagttaaacacaagcac
tgtgagaccttcagttgaccttataaacaagatggctaagtggccaatgg
gaaggtagtgcatactgcatggataccccggacaacgagggaagtctacc
tgggaaggatgaagcaaggcggcatgagatttcatcacgattcccaaagc
agcatgcaattcaaagcctgagagctatttatttcaacggaattttccat
tggacatttgaccttagataacttaaatcatcacgggggtgggggtggcg
agagggggaaccactgataagggaggcctgctgtacagagcagactagac
tagtccccagaacgactgggaaaataaagaaatacacttatctcagacgt
aggcagcaatacccagtcggaagcccccggtcataaatgtagcttccatt
tctcagcacagggacttttctcgctccccacagctctttctttaaatgtc
cagcgcaccatgcatggcagcctcttcctttgtccttctatacctacgct
tgacactcttctcttaaacaaagttgcactgcatttatttatttatctgt
ttatttggatgcaccacaccacagcacacatgtggaagctagaagacaat
tcctagggttctctcctcttaccatggaagtcctgagaaataagagtcgg
ctcctcaggcttgg
gaattctctggactgagggtgattgagttcatgcagttactttgcagata
atttccgattggtcttagcaggtccgaatcattcagacaaacaagtttct
ctggggccctgctgaagactgaagcattcagttttcgaggcaatggctac
ctcactctgaaaactgtattgaagtaagtacatgggaatcctagcaagcc
cataaagaagatatgatgtatgccagggtctcagtctccctggcaaatct
gaacaacgctccaacttcgtctttaaaaagaacacttaagtattagctga
atctttttctttcttttctctctctctctctctctctctctctctctctc
tctttctttctttctttaatataaggtctcccattttacacaggcaggcc
tcagaattgctgtgtagccaaggatgactgaccttcctgcctccatcatc
tgagcgctggggtaataagtattctatgtggtgttgggacctaagcctag
ggctttacacctgctggatgagtagtcgacaaaccatcttcctccagccc
aagctgatggaatgttcaaggctttgtcctctaatttctttgcggtccgt
acaggattgggaggttggacggtaaccataggtaatgaaggtaacgtact
ttaaagccccactcaaaggaccaaatccagccatcaggtaccctcctcct
caccctcctccacgcctgtcacaatggaggcaaaattgtcgtcaagaagg
atcatgtcagccgcctgtttagagacattcagagcctgtgatgcccatgg
caatgccgatgtcagccttcttagtgcgggggagtcgttcaccccgtccc
cagtcactgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174362938_174364046
seq2: B6Ng01-116O12.b_46_1159 (reverse)

seq1  CCAAGCCTGAGGAGCCGA-ACTTGATTTTCAGGACCTACATGGTAGGAGG  49
      ||||||||||||||||||  |||  || ||||||| | ||||||| ||||
seq2  CCAAGCCTGAGGAGCCGACTCTTATTTCTCAGGACTTCCATGGTAAGAGG  50

seq1  AGAGAACCCTATGAATTGTCTTCTAGCTTCCACATGTGTGCTGTGGTGT-  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AGAGAACCCTAGGAATTGTCTTCTAGCTTCCACATGTGTGCTGTGGTGTG  100

seq1  GTGCATCCAAATAAACAGATAAATAAATAAATGCAGTGCAACTTTGTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGCATCCAAATAAACAGATAAATAAATAAATGCAGTGCAACTTTGTTT-  149

seq1  AAGAGAGGAGTGTCAAGCGTAGGTATAGAAGGACAAAGGGAGAGGCTGCC  198
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAGAAGAGTGTCAAGCGTAGGTATAGAAGGACAAAGGAAGAGGCTGCC  199

seq1  ATGCATGGTGCGCT-GACATTTAA--GAAGAGCTGTGGGGAGCGAG-AAA  244
      |||||||||||||| |||||||||   ||||||||||||||||||| |||
seq2  ATGCATGGTGCGCTGGACATTTAAAGAAAGAGCTGTGGGGAGCGAGAAAA  249

seq1  GTCCCTGTGCTGAGAAATGGAAGCTACATTTATGACCGGGGGCTTCCGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGCTGAGAAATGGAAGCTACATTTATGACCGGGGGCTTCCGAC  299

seq1  TGGGTATTGCTGCCTACGTCTGAGATAAGTGTATTTCTTTATTTTCCCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTGCTGCCTACGTCTGAGATAAGTGTATTTCTTTATTTTCCCAG  349

seq1  TCGTTCTGGGGACTAGTCTAGTCTGCTCTGTACAGCAGGCCTCCCTTATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTGGGGACTAGTCTAGTCTGCTCTGTACAGCAGGCCTCCCTTATC  399

seq1  AGTGGTTCCCCCTCTCGCCACCCCCACCCCCGTGATGATTTAAGTTATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCCCCCTCTCGCCACCCCCACCCCCGTGATGATTTAAGTTATCT  449

seq1  AAGGTCAAATGTCCAATGGAAAATTCCGTTGAAATAAATAGCTCTCAGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAATGTCCAATGGAAAATTCCGTTGAAATAAATAGCTCTCAGGC  499

seq1  TTTGAATTGCATGCTGCTTTGGGAATCGTGATGAAATCTCATGCCGCCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGCATGCTGCTTTGGGAATCGTGATGAAATCTCATGCCGCCTT  549

seq1  GCTTCATCCTTCCCAGGTAGACTTCCCTCGTTGTCCGGGGTATCCATGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCCTTCCCAGGTAGACTTCCCTCGTTGTCCGGGGTATCCATGCA  599

seq1  GTATGCACTACCTTCCCATTGGCCACTTAGCCATCTTGTTTATAAGGTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACTACCTTCCCATTGGCCACTTAGCCATCTTGTTTATAAGGTCA  649

seq1  ACTGAAGGTCTCACAGTGCTTGTGTTTAACTTCGTCTTACTGAGCAGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGTCTCACAGTGCTTGTGTTTAACTTCGTCTTACTGAGCAGTGG  699

seq1  TCCTGAAGCACATGAGCAGTGATGCTGGCAATTCGGACACCACAAAGTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGCACATGAGCAGTGATGCTGGCAATTCGGACACCACAAAGTGC  749

seq1  AGCATCACAGGGCATCCTTTATGAGAGAGGGTGAGGATACAACGAGGTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACAGGGCATCCTTTATGAGAGAGGGTGAGGATACAACGAGGTAT  799

seq1  TTTCGAGGGGCCACATTCACAGAATCTATGTGATAATATATTAATCGTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGGGGCCACATTCACAGAATCTATGTGATAATATATTAATCGTTA  849

seq1  TATTTCATTATTAACTGCTAACCTCTTACTGGGCCTAATTTAGAAATTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTATTAACTGCTAACCTCTTACTGGGCCTAATTTAGAAATTAA  899

seq1  ATGTAATCACAGGTATGTACAGTATGATCTCTGGCCTCGGACTTCTATCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCACAGGTATGTACAGTATGATCTCTGGCCTCGGACTTCTATCT  949

seq1  CCTGGGGGCGGGGGCAGTTTTAGAACACAGCCCATGGGTAGAAGAGCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGCGGGGGCAGTTTTAGAACACAGCCCATGGGTAGAAGAGCAAA  999

seq1  GCCCTCTGGGAAATTGCTGCTTTGGTGAGTGAAGTTACAGGTCCAGCATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGGGAAATTGCTGCTTTGGTGAGTGAAGTTACAGGTCCAGCATC  1049

seq1  CCCTCACCTCAGAGAAAGAATAAAATTGTTATGAGAAGCCATTGAAGCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACCTCAGAGAAAGAATAAAATTGTTATGAGAAGCCATTGAAGCAT  1099

seq1  AAAGACTGAGAATTC  1109
      |||||||||||||||
seq2  AAAGACTGAGAATTC  1114

seq1: chr1_174163383_174164242
seq2: B6Ng01-116O12.g_69_930

seq1  GAATTCTCTGGACTGAGGGTGATTGAGTTCATGCAGTTACTTTGCAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACTGAGGGTGATTGAGTTCATGCAGTTACTTTGCAGATA  50

seq1  ATTTCCGATTGGTCTTAGCAGGTCCGAATCATTCAGACAAACAAGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGATTGGTCTTAGCAGGTCCGAATCATTCAGACAAACAAGTTTCT  100

seq1  CTGGGGCCCTGCTGAAGACTGAAGCATTCAGTTTTCGAGGCAATGGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCCTGCTGAAGACTGAAGCATTCAGTTTTCGAGGCAATGGCTAC  150

seq1  CTCACTCTGAAAACTGTATTGAAGTAAGTACATGGGAATCCTAGCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGAAAACTGTATTGAAGTAAGTACATGGGAATCCTAGCAAGCC  200

seq1  CATAAAGAAGATATGATGTATGCCAGGGTCTCAGTCTCCCTGGCAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAAGATATGATGTATGCCAGGGTCTCAGTCTCCCTGGCAAATCT  250

seq1  GAACAACGCTCCAACTTCGTCTTTAAAAAGAACACTTAAGTATTAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACGCTCCAACTTCGTCTTTAAAAAGAACACTTAAGTATTAGCTGA  300

seq1  ATCTTTTTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTTTCTTTCTTTCTTTAATATAAGGTCTCCCATTTTACACAGGCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTAATATAAGGTCTCCCATTTTACACAGGCAGGCC  400

seq1  TCAGAATTGCTGTGTAGCCAAGGATGACTGACCTTCCTGCCTCCATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTGCTGTGTAGCCAAGGATGACTGACCTTCCTGCCTCCATCATC  450

seq1  TGAGCGCTGGGGTAATAAGTATTCTATGTGGTGTTGGGACCTAAGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCTGGGGTAATAAGTATTCTATGTGGTGTTGGGACCTAAGCCTAG  500

seq1  GGCTTTACACCTGCTGGATGAGTAGTCGACAAACCATCTTCCTCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACACCTGCTGGATGAGTAGTCGACAAACCATCTTCCTCCAGCCC  550

seq1  AAGCTGATGGAATGTTCAAGGCTTTGTCCTCTAATTTC-TTGCGGTCCGT  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGCTGATGGAATGTTCAAGGCTTTGTCCTCTAATTTCTTTGCGGTCCGT  600

seq1  ACAGGATTGGGAGGTTGGACGGTAACCATAGGTAATGAAGGTAACGTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTGGGAGGTTGGACGGTAACCATAGGTAATGAAGGTAACGTACT  650

seq1  TT-AAGCCCCACTCAAAGGACCAAATCCAGCCATCAGGTACCCTCCTCCT  698
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCCACTCAAAGGACCAAATCCAGCCATCAGGTACCCTCCTCCT  700

seq1  CACCCTCCTCCACGCCTGTCACAATGGAGGCAAAATTGTCGTCAAGAAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTCCACGCCTGTCACAATGGAGGCAAAATTGTCGTCAAGAAGG  750

seq1  ATCATGTCAGCCGCCTGTTTAGAGACA-TCAGAGCCTGTGATGCCCATGG  797
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCATGTCAGCCGCCTGTTTAGAGACATTCAGAGCCTGTGATGCCCATGG  800

seq1  CAATGCCGATGTCAGCCTTCTTCAGTGCGGGGGAGTCGTTCACCCCGTCA  847
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CAATGCCGATGTCAGCCTTCTT-AGTGCGGGGGAGTCGTTCACCCCGTCC  849

seq1  CCAGTCACTGCCA  860
      |||||||||||||
seq2  CCAGTCACTGCCA  862