BAC Information

Click to search

BAC

Clone NameB6Ng01-117B05
Chromosome1 (Build37)
Map Location 15,315,444 - 15,316,659
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B05.bB6Ng01-117B05.g
ACCDH921909DH921910
length1,1871,238
definitionDH921909|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B05, 5' end.DH921910|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtccatatcctgcttctcttcacggatacccagttgtggtctc
tgagggaccaatccatctcttacaactgacaacttgcacttttctgactc
agtataaaaagttctcatttcctgccaccaaatggtattgaaaactatgc
tcagaaatagtccgatgttgattaaacaacacagtcagatgtagaatagc
tcatcctaataatcagacctggctattgctgggtattggttttaacagtc
ttaaaaagttggatattttaccagctttaaatggctttaatattttaact
taagagccacagatgtgaatgttgtgtttttgtaattctcccttcagaat
agcagtggaggtgtctccatgcagaggagctcctgtggaggcacgaggca
ggtgcttcagacaggcagctttgggtatttgtctgctcattttgctatct
gcaccacagattcttgtcacgggcaaagggtagcctcttactcagtctgt
gtgccaagagggcttgttctgacactaggcatggatcctttaatactctt
aaagaatggacacatcatctcctgacattcagcctgtctttcgaggactt
tgggcccaagggatgtttgtgaaatagactcatcatgtactagttacaac
tctctgtgagtgcaacaagacacacacttgtgtacacagtgcatggcata
gacagccaggggcaatcgaagtccaggcagctggtcctctgatacccagt
aaagcttctcagggtacggaaagtctggaaagcagcatgctttgaaggac
ttgtatttctaaaaggcagactgttcttcatcaggatattgtctctctaa
tgtatcctgtggttagttcagagctgcaagtgagaaagaagaagagagac
agtccagggctaccacatctcactcacagatttactcagttgcccatagt
tcaaagaaacttctagaataaataaaactatgcagctcagaaactcagat
acctttgagggagcatctaagaggaccatatagctattagaggagacaga
tatatactttaaatacttaagggaaatttttacccgataaacacggagaa
ttcagaaatcagaaacctcccatcagacgggccatctgtactgactgtga
tccagggagttgaacccggacgtaggcatttcttacc
gaattcctaaacctgataaacaacttcagtgaagtagctatatatgaact
taactcaaagaaatcagtggcctttctctacacaaaggataaataggctg
agaaagaaattagggacacaaccaccttcaaaataatcacaaataatata
aaatatcttggtgtgactctaactaataaaatgaaagatctgtatgtaag
aacttcaagtctctgaagaaagaaatcaaagatctcagaaggtggaaaga
tctcccatgctcatggattggcaggatcaatatagtaaaaatggctgtcc
taccaaaagcaatctacagattcaatgcaatccccatcaaaattccaatt
caattcttcacagagttagaaagggcaatttgcaaattcatctagaataa
caacaaacctaggatagcaaaaactattctcaacattaaaaacctctggt
ggaatcaccatccctgactgcaagctgtactacagagcaattgtgatcaa
aactgcatggtactgatatagtgacagacagatcagtggaatagaattga
aggcccagaaatgaaccaacacacctacggtcacttagtctttgacaaag
gtgatagaaccatccagtggaaaaaaagtcagtattttcaacaaatagtg
ctggcacaactagcagttagcatatagaagaatgcaaattgatccattct
tatctccttgtacaatgctcaagtctaactggatcaaggaactccacata
aaaccaagactgaaacttataaaggagaaagaggggaagagatacggaca
caggggaaaaaattcctgaacagaacagcaatggcttgtgctgtaagatc
aagaatcagcaaatggccctcataaaatttcaaaggacaccgtcaaagac
aaaacagcaccaacagattggaaaagatctttatcatcctaatctgatgg
gtactatatccatatatataaagaactcaataagttggactcataaaacc
aacacccgattgaaaatgggtatagagctacaaagatctcacgagaatac
taatgctgaaagcactaaaatttcacatcttaatcattcaggaaatgcat
caacatctggattccccctcacacagtcgaatgactactaaaacttaggt
acgcattgctgcagatttgaaagaaacctcctcattggtatggaatgcac
tggaagctcctcgcaagattgagcataattcacctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15315444_15316659
seq2: B6Ng01-117B05.b_46_1232

seq1  GAATTCTGTCCATATCCTGCTTCTCTTCACGGATACCCAGTTGTGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCATATCCTGCTTCTCTTCACGGATACCCAGTTGTGGTCTC  50

seq1  TGAGGGACCAATCCATCTCTTACAACTGACAACTTGCACTTTTCTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACCAATCCATCTCTTACAACTGACAACTTGCACTTTTCTGACTC  100

seq1  AGTATAAAAAGTTCTCATTTCCTGCCACCAAATGGTATTGAAAACTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAAGTTCTCATTTCCTGCCACCAAATGGTATTGAAAACTATGC  150

seq1  TCAGAAATAGTCCGATGTTGATTAAACAACACAGTCAGATGTAGAATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAGTCCGATGTTGATTAAACAACACAGTCAGATGTAGAATAGC  200

seq1  TCATCCTAATAATCAGACCTGGCTATTGCTGGGTATTGGTTTTAACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTAATAATCAGACCTGGCTATTGCTGGGTATTGGTTTTAACAGTC  250

seq1  TTAAAAAGTTGGATATTTTACCAGCTTTAAATGGCTTTAATATTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTTGGATATTTTACCAGCTTTAAATGGCTTTAATATTTTAACT  300

seq1  TAAGAGCCACAGATGTGAATGTTGTGTTTTTGTAATTCTCCCTTCAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCACAGATGTGAATGTTGTGTTTTTGTAATTCTCCCTTCAGAAT  350

seq1  AGCAGTGGAGGTGTCTCCATGCAGAGGAGCTCCTGTGGAGGCACGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGAGGTGTCTCCATGCAGAGGAGCTCCTGTGGAGGCACGAGGCA  400

seq1  GGTGCTTCAGACAGGCAGCTTTGGGTATTTGTCTGCTCATTTTGCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCAGACAGGCAGCTTTGGGTATTTGTCTGCTCATTTTGCTATCT  450

seq1  GCACCACAGATTCTTGTCACGGGCAAAGGGTAGCCTCTTACTCAGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAGATTCTTGTCACGGGCAAAGGGTAGCCTCTTACTCAGTCTGT  500

seq1  GTGCCAAGAGGGCTTGTTCTGACACTAGGCATGGATCCTTTAATACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGAGGGCTTGTTCTGACACTAGGCATGGATCCTTTAATACTCTT  550

seq1  AAAGAATGGACACATCATCTCCTGACATTCAGCCTGTCTTTCGAGGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGACACATCATCTCCTGACATTCAGCCTGTCTTTCGAGGACTT  600

seq1  TGGGCCCAAGGGATGTTTGTGAAATAGACTCATCATGTACTAGTTACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCAAGGGATGTTTGTGAAATAGACTCATCATGTACTAGTTACAAC  650

seq1  TCTCTGTGAGTGCAACAAGACACACACTTGTGTACACAGTGCATGGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGTGCAACAAGACACACACTTGTGTACACAGTGCATGGCATA  700

seq1  GACAGCCAGGGGCAATCGAAGTCCAGGCAGCTGGTCCTCTGATACCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGGCAATCGAAGTCCAGGCAGCTGGTCCTCTGATACCCAGT  750

seq1  AAAGCTTCTCAGGGTACGGAAAGTCTGGAAAGCAGCATGCTTTGAAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTCAGGGTACGGAAAGTCTGGAAAGCAGCATGCTTTGAAGGAC  800

seq1  TTGTATTTCTAAAAGGCAGACTGTTCTTCATCAGGATATTGTCTCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTCTAAAAGGCAGACTGTTCTTCATCAGGATATTGTCTCTCTAA  850

seq1  TGTATCCTGTGGTTAGTTCAGAGCTGCAAGTGAGAAAGAAGAAGAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCTGTGGTTAGTTCAGAGCTGCAAGTGAGAAAGAAGAAGAGAGAC  900

seq1  AGTCCAGGGCTACCACATCTCACTCACAGATTTACTCAGTTGCCCATAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGGCTACCACATCTCACTCACAGATTTACTCAGTTGCCCATAGT  950

seq1  TCAAAGAAACTTCTAGAATAAATAAAACTATGCAGCTCAGAAAACCCAGA  1000
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  TCAAAGAAACTTCTAGAATAAATAAAACTATGCAGCTCAG-AAACTCAGA  999

seq1  TACCTTTGAGGGAGCATCTAAAGAGGACCATAATAAGCTAATTAGAGGAG  1050
      ||||||||||||||||||| ||||||||||||   |||| ||||||||||
seq2  TACCTTTGAGGGAGCATCT-AAGAGGACCATA--TAGCT-ATTAGAGGAG  1045

seq1  ACAGATATATAACTATAAAATACTTTAAAGGGAAATTTTTACCCAGATAA  1100
      |||||||||| ||| | ||||||||  ||||||||||||||||| |||||
seq2  ACAGATATAT-ACT-TTAAATACTT--AAGGGAAATTTTTACCC-GATAA  1090

seq1  ACACGGGAGAATTCCAAGAAATCAGGAAACTCCCATCAAGACAGTGCCCA  1150
      |||| |||||||||  ||||||||| || |||||||| |||| | |||  
seq2  ACAC-GGAGAATTC--AGAAATCAGAAACCTCCCATC-AGAC-GGGCC--  1133

seq1  TATCTGTAACTGACTGTGGTATCCAGGGAGTCTTGGAGCCCACGTGACTG  1200
       |||||| ||||||||||  ||||||||||   | || |||    ||| |
seq2  -ATCTGT-ACTGACTGTG--ATCCAGGGAG---TTGAACCC---GGAC-G  1172

seq1  TAGGCATTTTCTTACC  1216
      |||||| |||||||||
seq2  TAGGCA-TTTCTTACC  1187