BAC Information

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BAC

Clone NameB6Ng01-117C07
Chromosome1 (Build37)
Map Location 14,150,175 - 14,325,336
singlet/doubletdoublet
Overlap geneEya1
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C07.bB6Ng01-117C07.g
ACCDH921958DH921959
length1,1661,156
definitionDH921958|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C07, 5' end.DH921959|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,324,157 - 14,325,336)(14,150,175 - 14,151,347)
sequence
gaattcaaactacagttctgagagacaccaccttttaagctacaaaatag
ataaaggggtgctaagagacaaagctgattggaatcatagaggagaaagt
tggacaagagagtccctaattttgttttcatctctagtcctgcatgtgtg
acatgaaacagaatgttctagaattgtatccctctatatgtagtccactg
ccaaagccataagctaagctctgggtgattcccagtggtaagtctcaagc
agtgagctaatggctgaaatcagaagtgagattggagttaccacgcacac
aggtaagatagaactgacagtctgaaactgaccagagggaatgaaaactt
accttctccagatgattttacttggatccagagtaaaccaacagaatatc
aaaatgtctgagatgttaccccaaagttacttgccatacagaattaaaag
acagtaactaatggaaccaaggcaaaccctcttgaaatgaattaaataat
aggagtttgctacggtccacttccaaggacaggtggacgttttctttaat
taaaaataaacaaacacgtaaagtagaaacttcacttattgacccaataa
aagaacagaaataacataagaatgcggatggagcaagccaatttgatgca
gaaagtctaaagaacagtcagaaaagagatttacagaaatgtagcagagc
cttgacactctctctatcagaggtcaaggaaggaagtaattaatgttgga
aaaaggattgacaggtgggtctgtctttaaagaaagaatcttcctagagt
tatgaaactgatacatacagatttttttttcctatgcagttttaccaaag
agcttaacattaatagcaaaacaaaactttaaatagggagtaattgacaa
atttcacttacaaatataagtacaatattctgaaagctttaaagaaattt
tattggcatacctgacatgacattaaatacatgcaatctttaaattctgg
ctactcaatatttatatgaaactttcaaactttctgacgactgaacgcgt
ggtgataccatataaaaactgggacagctagaacccccactgaagtgcaa
tcttgtgttcaagtagcttcaattgtacatatccatcgcaggcagtcata
atggaccatctatttt
gaattcttagtggtttccagtagtcatgagtgtgagtaaggacttgttat
gctggagaacacaattctaaccaaagcttttacaaacaacccccaaagga
caggataaggacaaggcagacaaagaaaaaaaacttctgtaattgatgct
ccagacgggtcttatttaaattacaaaggcattctaacaagcttaagtat
aagattctggaaaagggccaattgtaaggatttcctataaggagaatcat
aatatttcaagtgttcaacttatttaacagcaacgtgtttcaaggtatat
ccatgctgtagaatgtagacatagacatttaaagccatcaacatggaggg
cattttcaatttcattttgatagtaaccaagtttggcactagtgaggtag
atgagtttctaaggtataagtaattctctcatttgagctttcttgaccct
caccatcttacctgaagctcttgattctgccagtacacttccaagagacc
agcttagggtatggggatatagctcagtgagtagagtatttacctagcat
tcaggatgacttggttttcccccaataaactctgtgtggtggcacaggcc
tgaaattccagcatagaccatttgttgccctggcctacatgagaatcatt
tgtaagtaaatctgacctttatataacagtttctacatgaaaatttctag
acattctagactgacatatttttcattacctgaatgttttattaattggc
ccataatttctgattaattaattatatatgtgatgccaatggccagtcca
tgacatgcattctttgttattgttgttgctttggattttgatctgtaata
gataggtttaagatccatagaatgaagagagaatgaattctagcagaata
tatagctccttggtgctgtcgaacctctaccctgagccagtgtcccacat
gggaacagttgtgcaagagttgaacagcagtacaatctctcatggcctgt
ctcacagtgtgacaccactctgttgttccaagctctaagatatctttttt
tcataacccacatgcttgttctacattttttttcttaaaataagaaatac
ctctcagtcctataacttatgaatgaggaactaataacataaagatgttc
tggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14324157_14325336
seq2: B6Ng01-117C07.b_42_1207 (reverse)

seq1  AAAATAAGATGGTCCATGTATGACTG-CTGCTGATGGATATGGTAACAAA  49
      ||||| ||||||||||| |||||||| |||| ||||||||||   |||| 
seq2  AAAAT-AGATGGTCCAT-TATGACTGCCTGC-GATGGATATG--TACAA-  44

seq1  TTTGAAGCTAACTTTGACACAAGATTTTCCACTTCCAGTGGGGGTTTCTA  99
       |||||||| ||||  ||||||||  || ||||| ||||||||| |||||
seq2  -TTGAAGCT-ACTTGAACACAAGA--TTGCACTT-CAGTGGGGG-TTCTA  88

seq1  GCTGTCCCAGTTTTTTATATGGTATCACCACGCGTTCAGTCGGTCAGAAA  149
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  GCTGTCCCAG-TTTTTATATGGTATCACCACGCGTTCAGTC-GTCAGAAA  136

seq1  GTTTGAAAGTTTTCATATAAATATTGAGTAGCCAGAATTTAAAGATTGCA  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAG-TTTCATATAAATATTGAGTAGCCAGAATTTAAAGATTGCA  185

seq1  TGTATTTAATGTCATGTCAGGTATGCCAATAAAATTTCTTTAAAGCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAATGTCATGTCAGGTATGCCAATAAAATTTCTTTAAAGCTTTC  235

seq1  AGAATATTGTACTTATATTTGTAAGTGAAATTTGTCAATTACTCCCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTGTACTTATATTTGTAAGTGAAATTTGTCAATTACTCCCTATT  285

seq1  TAAAGTTTTGTTTTGCTATTAATGTTAAGCTCTTTGGTAAAACTGCATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTTGTTTTGCTATTAATGTTAAGCTCTTTGGTAAAACTGCATAG  335

seq1  GAAAAAAAAATCTGTATGTATCAGTTTCATAACTCTAGGAAGATTCTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATCTGTATGTATCAGTTTCATAACTCTAGGAAGATTCTTTC  385

seq1  TTTAAAGACAGACCCACCTGTCAATCCTTTTTCCAACATTAATTACTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACAGACCCACCTGTCAATCCTTTTTCCAACATTAATTACTTCC  435

seq1  TTCCTTGACCTCTGATAGAGAGAGTGTCAAGGCTCTGCTACATTTCTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGACCTCTGATAGAGAGAGTGTCAAGGCTCTGCTACATTTCTGTA  485

seq1  AATCTCTTTTCTGACTGTTCTTTAGACTTTCTGCATCAAATTGGCTTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTTCTGACTGTTCTTTAGACTTTCTGCATCAAATTGGCTTGCT  535

seq1  CCATCCGCATTCTTATGTTATTTCTGTTCTTTTATTGGGTCAATAAGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGCATTCTTATGTTATTTCTGTTCTTTTATTGGGTCAATAAGTGA  585

seq1  AGTTTCTACTTTACGTGTTTGTTTATTTTTAATTAAAGAAAACGTCCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTACTTTACGTGTTTGTTTATTTTTAATTAAAGAAAACGTCCACC  635

seq1  TGTCCTTGGAAGTGGACCGTAGCAAACTCCTATTATTTAATTCATTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGGAAGTGGACCGTAGCAAACTCCTATTATTTAATTCATTTCAA  685

seq1  GAGGGTTTGCCTTGGTTCCATTAGTTACTGTCTTTTAATTCTGTATGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGCCTTGGTTCCATTAGTTACTGTCTTTTAATTCTGTATGGCA  735

seq1  AGTAACTTTGGGGTAACATCTCAGACATTTTGATATTCTGTTGGTTTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTGGGGTAACATCTCAGACATTTTGATATTCTGTTGGTTTACT  785

seq1  CTGGATCCAAGTAAAATCATCTGGAGAAGGTAAGTTTTCATTCCCTCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCAAGTAAAATCATCTGGAGAAGGTAAGTTTTCATTCCCTCTGG  835

seq1  TCAGTTTCAGACTGTCAGTTCTATCTTACCTGTGTGCGTGGTAACTCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCAGACTGTCAGTTCTATCTTACCTGTGTGCGTGGTAACTCCAA  885

seq1  TCTCACTTCTGATTTCAGCCATTAGCTCACTGCTTGAGACTTACCACTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCTGATTTCAGCCATTAGCTCACTGCTTGAGACTTACCACTGG  935

seq1  GAATCACCCAGAGCTTAGCTTATGGCTTTGGCAGTGGACTACATATAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCCAGAGCTTAGCTTATGGCTTTGGCAGTGGACTACATATAGAG  985

seq1  GGATACAATTCTAGAACATTCTGTTTCATGTCACACATGCAGGACTAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAATTCTAGAACATTCTGTTTCATGTCACACATGCAGGACTAGAG  1035

seq1  ATGAAAACAAAATTAGGGACTCTCTTGTCCAACTTTCTCCTCTATGATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACAAAATTAGGGACTCTCTTGTCCAACTTTCTCCTCTATGATTC  1085

seq1  CAATCAGCTTTGTCTCTTAGCACCCCTTTATCTATTTTGTAGCTTAAAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCTTTGTCTCTTAGCACCCCTTTATCTATTTTGTAGCTTAAAAG  1135

seq1  GTGGTGTCTCTCAGAACTGTAGTTTGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  GTGGTGTCTCTCAGAACTGTAGTTTGAATTC  1166

seq1: chr1_14150175_14151347
seq2: B6Ng01-117C07.g_68_1223

seq1  GAATTCTTAGTGGTTTCCAGTAGTCATGAGTGTGAGTAAGGACTTGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTGGTTTCCAGTAGTCATGAGTGTGAGTAAGGACTTGTTAT  50

seq1  GCTGGAGAACACAATTCTAACCAAAGCTTTTACAAACAACCCCCAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAACACAATTCTAACCAAAGCTTTTACAAACAACCCCCAAAGGA  100

seq1  CAGGATAAGGACAAGGCAGACAAAGAAAAAAAACTTCTGTAATTGATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAGGACAAGGCAGACAAAGAAAAAAAACTTCTGTAATTGATGCT  150

seq1  CCAGACGGGTCTTATTTAAATTACAAAGGCATTCTAACAAGCTTAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACGGGTCTTATTTAAATTACAAAGGCATTCTAACAAGCTTAAGTAT  200

seq1  AAGATTCTGGAAAAGGGCCAATTGTAAGGATTTCCTATAAGGAGAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGGAAAAGGGCCAATTGTAAGGATTTCCTATAAGGAGAATCAT  250

seq1  AATATTTCAAGTGTTCAACTTATTTAACAGCAACGTGTTTCAAGGTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCAAGTGTTCAACTTATTTAACAGCAACGTGTTTCAAGGTATAT  300

seq1  CCATGCTGTAGAATGTAGACATAGACATTTAAAGCCATCAACATGGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGTAGAATGTAGACATAGACATTTAAAGCCATCAACATGGAGGG  350

seq1  CATTTTCAATTTCATTTTGATAGTAACCAAGTTTGGCACTAGTGAGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAATTTCATTTTGATAGTAACCAAGTTTGGCACTAGTGAGGTAG  400

seq1  ATGAGTTTCTAAGGTATAAGTAATTCTCTCATTTGAGCTTTCTTGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTCTAAGGTATAAGTAATTCTCTCATTTGAGCTTTCTTGACCCT  450

seq1  CACCATCTTACCTGAAGCTCTTGATTCTGCCAGTACACTTCCAAGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTACCTGAAGCTCTTGATTCTGCCAGTACACTTCCAAGAGACC  500

seq1  AGCTTAGGGTATGGGGATATAGCTCAGTGAGTAGAGTATTTACCTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGGTATGGGGATATAGCTCAGTGAGTAGAGTATTTACCTAGCAT  550

seq1  TCAGGATGACTTGGTTTTCCCCCAATAAACTCTGTGTGGTGGCACAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGACTTGGTTTTCCCCCAATAAACTCTGTGTGGTGGCACAGGCC  600

seq1  TGAAATTCCAGCATAGACCATTTGTTGCCCTGGCCTACATGAGAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCAGCATAGACCATTTGTTGCCCTGGCCTACATGAGAATCATT  650

seq1  TGTAAGTAAATCTGACCTTTATATAACAGTTTCTACATGAAAATTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTAAATCTGACCTTTATATAACAGTTTCTACATGAAAATTTCTAG  700

seq1  ACATTCTAGACTGACATATTTTTCATTACCTGAATGTTTTATTAATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAGACTGACATATTTTTCATTACCTGAATGTTTTATTAATTGGC  750

seq1  CCATAATTTCTGATTAATTAATTATATATGTGATGCCAATGGCCAGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATTTCTGATTAATTAATTATATATGTGATGCCAATGGCCAGTCCA  800

seq1  TGACATGCATTCTTTGTTATTGTTGTTGCTTTGGATTTTGATCTGTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCATTCTTTGTTATTGTTGTTGCTTTGGATTTTGATCTGTAATA  850

seq1  GATAAGGTTTAAGATCCATAGAATGAAGAGAGAATGAATTCTAGCAGAAT  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-AGGTTTAAGATCCATAGAATGAAGAGAGAATGAATTCTAGCAGAAT  899

seq1  ATATAGCTCCTTGGTGCTGTCGAACCTCTACCCTGAGCCAGTGTCCCCAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATAGCTCCTTGGTGCTGTCGAACCTCTACCCTGAGCCAGTGT-CCCAC  948

seq1  ATGGGAACAGTTGTGCAAGAGTTGAACAGCAGGTACAATCTCTCCATGGC  1000
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  ATGGGAACAGTTGTGCAAGAGTTGAACAGCA-GTACAATCTCT-CATGGC  996

seq1  CTGTCTTCACAGTGTGACACCACTCTGTTGTTTCCCAAGCTCTTAGGATA  1050
      ||||| ||||||||||||||||||||||||||  |||||||| || ||||
seq2  CTGTC-TCACAGTGTGACACCACTCTGTTGTT--CCAAGCTC-TAAGATA  1042

seq1  TCTTTTTCTCATTAACACCACATGCTTGTTCTTACATTTTTTTTCTTATA  1100
      ||||||| ||| |||| |||||||||||||| |||||||||||||||| |
seq2  TCTTTTTTTCA-TAAC-CCACATGCTTGTTC-TACATTTTTTTTCTTAAA  1089

seq1  ATATAGAAATAACTTCTCAAGTCCTATAACTATTGAATGAGGGAACTAAT  1150
      ||| |||||| || |||| ||||||||||||  ||||||| |||||||||
seq2  ATA-AGAAAT-ACCTCTC-AGTCCTATAACTTATGAATGA-GGAACTAAT  1135

seq1  AACAATAAGAGTGTTCTGTGTTC  1173
      ||||  |||| ||||||| ||||
seq2  AACATAAAGA-TGTTCTG-GTTC  1156