BAC Information

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BAC

Clone NameB6Ng01-117I08
Chromosome8 (Build37)1 (Build37)
Map Location 15,309,712 - 15,310,811177,163,706 - 177,164,261
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599
Downstream geneEG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I08.bB6Ng01-117I08.g
ACCDH922241DH922242
length1,079930
definitionDH922241|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I08, 5' end.DH922242|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,309,712 - 15,310,811)(177,163,706 - 177,164,261)
sequence
gaattctctatatcctgtagccactagattcaaggagtgcagtccacaca
ggaaagccttggcacatctcatacagatgttgggagactggaagcacgtg
gtagaacctgagggttgtaaacactgaaggaagactggactaatgagtaa
caatgttcttagaagtgcattattgatgaacgaatgtgaatcccattgat
gtagatgaatctgagatttgcatgtgtctctacttggagcacaccttctg
taataattcattggattctggatactttgacaatagaggtctctttacaa
tgaatgcatataactagaagattggtttgaccttattggactgttcacca
aaaaactttactcctgggctgtgtcacatgaacatgcttcctgtggctcc
tgcacatatctctcccatttctggccattagtgggagtgctaggccatgc
tgtgatgtctgggataatccaggatgttcttgtaagcccctaaatgcagg
ccttatctctccctctctcacgatctttatactttctccccttgcctaga
gtgcttccttggtacacgacagctgcccaagcctagaccccactgcgtca
agtggctgtaaactaggagctgactgacctaatttcaaacctaattacat
agggcattcagtatggtgtccgcactatggggcaaagtgattgataggtt
ggctcatactaaaatcaccatatgcattcaatgttgggtttccagggttt
ccctgatgcatcccaatgaattttctatatcctgtagccaccagattcac
agagtgcagtccacacaggaaagccttggaacatttcatacagatgttgg
gagacttacagttaatccaataatatgacatttattttctagaagaatgt
ctatgtgttcatttatgaactgtgtatgactaggctcgtgactttgtgtc
ttttcgatttcttctatctgtgaatgacatttacatcgtcgaatgcatct
ctgaatatgctgatgaatgagcaaatttcatataagcagaatcatttcag
tttcgttccttaatactgctttcaagtca
gaattctttgttaacctctgtaccccatttttaatggggttatttgaatt
tctggagtccatcgtcttgagttccttgtatatactggatactagtcccc
tatcagatttacgattggtaaaaatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgccttacctaacctttgcaattttat
gagatcccatttgtcaattctcgatcttactccatccttgtgaaaagaag
ccccttggtcttgcaaactttatatgccccattacagaggaatgcctggg
ccaagaagagggagtgggtaggtaggggagcagggcagaaggagggtatt
gggaaattgttttccagcctttcactctgaggtagtgtctgtctttttcc
ctgaaatgggtttcctgttagcagcagaatgttgggtcctgtttgtgtag
ccagtctgttagtttttgtctttttattggggaattgagtccattgatat
taagagatattaaggaaaagtaattgttgcttccttttatttttttgtta
gagttggcattctgttcttttgactgtcttctttttggtttgttgaggga
ttactttcttgctttttctagggtgtgatttctgtccttgtattgttttt
ttctgttattattttgaagggctggattcgtggaaagataatatgtgaat
ttggttttgtctggaatactttggtttttccatctatggtaattgagagt
ttgcccgggtatatagtctgggctggcatttgtgttctcttagtgtctgt
ataacatctgtccaggctcttctggctttctattctctggggaaagtctt
gtgtaattctgataggcctgtctttatctgttacttgacctttttcccta
ctgcttttatatcttctttatttaggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_15309712_15310811
seq2: B6Ng01-117I08.b_43_1111

seq1  GAATTCTCTATATCCTGTAGCCACTAGATTCAAGGAGTGCAGTCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATATCCTGTAGCCACTAGATTCAAGGAGTGCAGTCCACACA  50

seq1  GGAAAGCCTTGGCACATCTCATACAGATGTTGGGAGACTGGAAGCACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCTTGGCACATCTCATACAGATGTTGGGAGACTGGAAGCACGTG  100

seq1  GTAGAACCTGAGGGTTGTAAACACTGAAGGAAGACTGGACTAATGAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACCTGAGGGTTGTAAACACTGAAGGAAGACTGGACTAATGAGTAA  150

seq1  CAGTGTTCTTAGAAGTGCATTATTGATGAAGGAATGTGAATCCCATTGAT  200
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATGTTCTTAGAAGTGCATTATTGATGAACGAATGTGAATCCCATTGAT  200

seq1  GTAGATGAATCTGAGATTTGCATGTCTCTCTACTTGGAGCACACCTTCTG  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAGATGAATCTGAGATTTGCATGTGTCTCTACTTGGAGCACACCTTCTG  250

seq1  TAATAATTCATTGGATTCTGGATACTTTGACAATAGAGGTCTCTTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCATTGGATTCTGGATACTTTGACAATAGAGGTCTCTTTACAA  300

seq1  TGAATGCATATAACTAGAAGATTGGTTTGACCTTATTGTACTGTTCACCA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAATGCATATAACTAGAAGATTGGTTTGACCTTATTGGACTGTTCACCA  350

seq1  AAAAACTTTACTCCTGGGCTGTGTCACATGAACATGCTTCCTGTGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTACTCCTGGGCTGTGTCACATGAACATGCTTCCTGTGGCTCC  400

seq1  TGCACATATCTCTCCCATTTCTGGCCATTAGTGGGAGTGCTAGGCCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATCTCTCCCATTTCTGGCCATTAGTGGGAGTGCTAGGCCATGC  450

seq1  TGTGATGTCTGGGATAATCCAGGATGTTCTTGTAAGCCCCTAAGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGATGTCTGGGATAATCCAGGATGTTCTTGTAAGCCCCTAAATGCAGG  500

seq1  CCTTATCTCTCCATCTCTCAGGATCTTTATACTCTCTCCCCTTGCCTAGA  550
      |||||||||||| ||||||| |||||||||||| ||||||||||||||||
seq2  CCTTATCTCTCCCTCTCTCACGATCTTTATACTTTCTCCCCTTGCCTAGA  550

seq1  GTGCTTCCTTGGTCCACGACAGCTGCCCAAGCCTAGACCCCAGTGCGTCA  600
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  GTGCTTCCTTGGTACACGACAGCTGCCCAAGCCTAGACCCCACTGCGTCA  600

seq1  AGTGGCTGTAAACTAGGAGCTGACTGACCTAGTTTCAAACCTAAGTACAT  650
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  AGTGGCTGTAAACTAGGAGCTGACTGACCTAATTTCAAACCTAATTACAT  650

seq1  AGGGCATTCAGTAGGGTGTCCGCACTAGGGGGCAAAGTGATTGATAGGTT  700
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AGGGCATTCAGTATGGTGTCCGCACTATGGGGCAAAGTGATTGATAGGTT  700

seq1  GGCTCATACTAAAATCACCATATGCATTCAATGTTGGCTTTCCAGGGTTT  750
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCTCATACTAAAATCACCATATGCATTCAATGTTGGGTTTCCAGGGTTT  750

seq1  CCCTAACAGCATCCCAATGAATTTTCTATATCCTGTAGCCACCAGATTCA  800
      |||| |  ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGA-TGCATCCCAATGAATTTTCTATATCCTGTAGCCACCAGATTCA  799

seq1  AGGAGTGCAGTCCACACAGGAAAGCCTTGGCACATTTCATACAGATGTTG  850
        |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGAGTGCAGTCCACACAGGAAAGCCTTGGAACATTTCATACAGATGTTG  849

seq1  GGAGACTTAAAGTTAATCAGAATAAATATGACAATTATTTTTCTAGAAAG  900
      ||||||||| ||||||||  ||| ||||||||| ||| |||||||| |||
seq2  GGAGACTTACAGTTAATC-CAAT-AATATGACATTTA-TTTTCTAG-AAG  895

seq1  AATGTCTTATGTGATTCATTTATGAACTAGTGTATAGAACTAGGCTCGGT  950
      |||||| |||||| |||||||||||||| ||||||   ||||||||| ||
seq2  AATGTC-TATGTG-TTCATTTATGAACT-GTGTAT--GACTAGGCTC-GT  939

seq1  GACTTTGTGGTCCCTTTCTATTTCCTTCTTATCTTGTGAAATGAGATTTA  1000
      |||||||||   | |||| |||| |||| |||| |||| ||||| |||| 
seq2  GACTTTGTG--TCTTTTCGATTT-CTTC-TATC-TGTG-AATGACATTT-  982

seq1  ACATCTTCAGAAGGCATCTCCTGAAATATTCATATAAATGAAGCAAATTT  1050
      ||||| || ||| |||||| ||| ||||| |  || |||| |||||||||
seq2  ACATCGTC-GAATGCATCT-CTG-AATATGCTGATGAATG-AGCAAATTT  1028

seq1  CAATATAAAGCAGAAAAATCCATTTCAAGTTTTCGTCCCCTTAATACTGC  1100
      | |||| ||||||||     |||||||   ||||||  ||||||||||||
seq2  C-ATAT-AAGCAGAA----TCATTTCA--GTTTCGT-TCCTTAATACTGC  1069

seq1: chr1_177163706_177164261
seq2: B6Ng01-117I08.g_452_994 (reverse)

seq1  AATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCA  50
      ||||| ||||||||||| || ||| |||||||||| ||||| ||||||||
seq2  AATGC-CTAAATAAAGA-AG-ATA-TAAAAGCAGT-AGGGAAAAAGGTCA  45

seq1  AGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAG  100
      ||||||| ||||||  ||||||||||||||||||| |||| |||| ||||
seq2  AGTAACAGATAAAGACAGGCCTATCAGAATTACACAAGAC-TTTCCCCAG  94

seq1  AGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGA  150
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATA-GAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGA  143

seq1  GAACACAAATGCCAGCCCAGGCTAATATACCCGGCCAAACTCTCAATTAC  200
      |||||||||||||||||||| || |||||||||| |||||||||||||||
seq2  GAACACAAATGCCAGCCCAGACT-ATATACCCGGGCAAACTCTCAATTAC  192

seq1  CATAAATGGAGAAACCAAAGTATTCCATGACAAATCCAAATTCACACAAT  250
      |||| ||||| |||||||||||||||| |||||| ||||||||||| | |
seq2  CATAGATGGAAAAACCAAAGTATTCCA-GACAAAACCAAATTCACATATT  241

seq1  ATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAA  300
      |||||||||||||||||||||||||||  |||||||||||||| || |||
seq2  ATCTTTCCACGAATCCAGCCCTTCAAA--ATAATAACAGAAAA-AAACAA  288

seq1  TACAAGGACTGAAATCACGCCCTAGAACAAGCAAGAAAGTAATCCCTCAA  350
      ||||||||| |||||||| |||||||| ||||||||||||||||||||||
seq2  TACAAGGACAGAAATCACACCCTAGAAAAAGCAAGAAAGTAATCCCTCAA  338

seq1  CAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACA  400
      ||||||||||||||||||| || ||||||||||||||||||||||||| |
seq2  CAAACCAAAAAGAAGACAGTCAAAAGAACAGAATGCCAACTCTAACAA-A  387

seq1  AAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAA  437

seq1  TGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACA  500
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  TGGACTCAATTCCCCAATAAAAAGACAAAAACTAACAGACTGGCTACACA  487

seq1  AACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAA  550
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AACAGGACCCAACATTCTGCTGCTAACAGGAAACCCATTTCAGGGAAAAA  537

seq1  GACAGA  556
      ||||||
seq2  GACAGA  543