BAC Information

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BAC

Clone NameB6Ng01-117I15
Chromosome1 (Build37)
Map Location 16,094,798 - 16,240,440
singlet/doubletdoublet
Overlap geneRdh10
Upstream geneLOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7
Downstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I15.bB6Ng01-117I15.g
ACCDH922255DH922256
length715691
definitionDH922255|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I15, 5' end.DH922256|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,094,798 - 16,095,509)(16,239,723 - 16,240,440)
sequence
ttggacccaaaaggcatgttcagggatgtgaactacaagtcccagcatgc
gtcgctgcataacccgcggggctggagggcgacgttgaccgacactctgg
gcagccttcgcggcggtgattcccattaggctcactagagtatgaggctt
cacgtcctcagcggctagctgagctatgaaatcactgtctgtcacctcct
ccggctctctgcggcccgtggccacgcagccctgctcccccacctcggct
gcgctgccgaggtcctttttccgcccgactgccgggctgtcttccgcagc
gcctgatcatcggccgccaggtccacagtccctcggttggcgaaagcagc
gagaccgggaagagtgatgacccgaaggtccgaggaggatgggggggttc
gctgctgcgggacccggcaggcgcaagccacggcgaccctcagcaggggg
cgtgagccgcgaagagtggcacgacgagggcgggagccttcggccgcggt
cgtggaagaggggctgccccgcgcggtggggcggccggcgggagggcgag
cggggaggggaggctgggccgggggcggggtgcgaccgggggcggggagg
gccgagctgagggagggccgatgccactgcagcggccggcgcttcccggc
ggtgggtttatatagcgcggagtgtgggagcttccctcagagccggctgg
gaacgctctgacgct
gaattctctttgctccctcgttagtcctggtgtggtagatgggagtcgag
gaagggcagagtaccgctctcacccacccaagacaggctcaagggtgggg
gtgggtgtccagggcatatacagttactacattctccacggttttctttg
ggacacatgttggaagaatggtctgaccccaaggggacagagcttctcac
tctggtatgtccaggctcaagctcagcaaagcggcaccgaccaggtgttg
caaatggcccttgtgaagtgcctcagatcagcccctctgtcctctgtcac
atagccagttattgagccggaagaggggttagagatgacactgtgcatca
ttctgggatgctgtcagagcaaaagtgcccagctgttctgctgtggaccc
agatcgccagagtacaagccttcaggaagtgtccgagctgctggcccact
gtggcacctgtctatcatgtgcttgtatgctcctgcccaggatcctccca
cgagctcttggcatccactgcctgctctgcccttttccacactgcatcct
gcagaagctgggtctttggtgcaatttgttttccaagctttaaaaataaa
attactgggagggtaaaagaaacctaaagcccaaagtcctcgggcattac
gccaccaaactcctttagctccagctttgtttttgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_16094798_16095509
seq2: B6Ng01-117I15.b_54_768

seq1  TTGGACCCAAAAGGCATGTTCAGGGATGTGAACTACAAGTCCCAGCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCAAAAGGCATGTTCAGGGATGTGAACTACAAGTCCCAGCATGC  50

seq1  GTCGCTGCATAACCCGCGGGGCTGGAGGGCGACGTTGACCGACACTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGCATAACCCGCGGGGCTGGAGGGCGACGTTGACCGACACTCTGG  100

seq1  GCAGCCTTCGCGGCGGTGATTCCCATTAGGCTCACTAGAGTATGAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTCGCGGCGGTGATTCCCATTAGGCTCACTAGAGTATGAGGCTT  150

seq1  CACGTCCTCAGCGGCTAGCTGAGCTATGAAATCACTGTCTGTCACCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCTCAGCGGCTAGCTGAGCTATGAAATCACTGTCTGTCACCTCCT  200

seq1  CCGGCTCTCTGCGGCCCGTGGCCACGCAGCCCTGCTCCCCCACCTCGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCTCTGCGGCCCGTGGCCACGCAGCCCTGCTCCCCCACCTCGGCT  250

seq1  GCGCTGCCGAGGTCCTTTTTCCGCCCGACTGCCGGGCTGTCTTCCGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCCGAGGTCCTTTTTCCGCCCGACTGCCGGGCTGTCTTCCGCAGC  300

seq1  GCCTGATCATCGGCCGCCAGGTCCACAGTCCCTCGGTTGGCGAAAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATCATCGGCCGCCAGGTCCACAGTCCCTCGGTTGGCGAAAGCAGC  350

seq1  GAGACCGGGAAGAGTGATGACCCGAAGGTCCGAGGAGGATGGGGGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCGGGAAGAGTGATGACCCGAAGGTCCGAGGAGGATGGGGGGGTTC  400

seq1  GCTGCTGCGGGACCCGGCAGGCGCAAGCCACGGCGACCCTCAGCAGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCGGGACCCGGCAGGCGCAAGCCACGGCGACCCTCAGCAGGGGG  450

seq1  CGTGAGCCGCGAAGAGTGGCACGACGAGGGCGGGAGCCTTCGGCCGCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCCGCGAAGAGTGGCACGACGAGGGCGGGAGCCTTCGGCCGCGGT  500

seq1  CGTGGAAGAGGGGCTGCCCCGCGCGGTGGGGCGGCCGGCGGGAGGGCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGAGGGGCTGCCCCGCGCGGTGGGGCGGCCGGCGGGAGGGCGAG  550

seq1  CGGGGAGGGGAGGCTGGGCCGGGGGCGGGGTGCGACCGGGGGCGGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGGGAGGCTGGGCCGGGGGCGGGGTGCGACCGGGGGCGGGGAGG  600

seq1  GCCGAGCTGAGGGAGGGCCGATGCCACTGCAGCGGCCGGCGCTTCCCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGCTGAGGGAGGGCCGATGCCACTGCAGCGGCCGGCGCTTCCCGGC  650

seq1  GGTGGG-TTATATAGCGCGGAGTGT-GGAGC-TACCTCAGAGCCGGCTGG  697
      |||||| |||||||||||||||||| ||||| | ||||||||||||||||
seq2  GGTGGGTTTATATAGCGCGGAGTGTGGGAGCTTCCCTCAGAGCCGGCTGG  700

seq1  GAACGCTCAGACGCT  712
      |||||||| ||||||
seq2  GAACGCTCTGACGCT  715

seq1: chr1_16239723_16240440
seq2: B6Ng01-117I15.g_69_759 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAAAACAAAGCTGGAG  50
                                |||||||| |||||||||||||||
seq2  --------------------------CACACACA-AAAACAAAGCTGGAG  23

seq1  CTAAAGGAGTTTGGTGGCGTAATGCCCGAGGACTTTGGGCTTTAGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGTTTGGTGGCGTAATGCCCGAGGACTTTGGGCTTTAGGTTTC  73

seq1  TTTTACCCTCCCAGTAATTTTATTTTTAAAGCTTGGAAAACAAATTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCTCCCAGTAATTTTATTTTTAAAGCTTGGAAAACAAATTGCAC  123

seq1  CAAAGACCCAGCTTCTGCAGGATGCAGTGTGGAAAAGGGCAGAGCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCCAGCTTCTGCAGGATGCAGTGTGGAAAAGGGCAGAGCAGGCA  173

seq1  GTGGATGCCAAGAGCTCGTGGGAGGATCCTGGGCAGGAGCATACAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCCAAGAGCTCGTGGGAGGATCCTGGGCAGGAGCATACAAGCAC  223

seq1  ATGATAGACAGGTGCCACAGTGGGCCAGCAGCTCGGACACTTCCTGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGACAGGTGCCACAGTGGGCCAGCAGCTCGGACACTTCCTGAAGG  273

seq1  CTTGTACTCTGGCGATCTGGGTCCACAGCAGAACAGCTGGGCACTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTCTGGCGATCTGGGTCCACAGCAGAACAGCTGGGCACTTTTGC  323

seq1  TCTGACAGCATCCCAGAATGATGCACAGTGTCATCTCTAACCCCTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGCATCCCAGAATGATGCACAGTGTCATCTCTAACCCCTCTTCC  373

seq1  GGCTCAATAACTGGCTATGTGACAGAGGACAGAGGGGCTGATCTGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATAACTGGCTATGTGACAGAGGACAGAGGGGCTGATCTGAGGCA  423

seq1  CTTCACAAGGGCCATTTGCAACACCTGGTCGGTGCCGCTTTGCTGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAGGGCCATTTGCAACACCTGGTCGGTGCCGCTTTGCTGAGCTT  473

seq1  GAGCCTGGACATACCAGAGTGAGAAGCTCTGTCCCCTTGGGGTCAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGACATACCAGAGTGAGAAGCTCTGTCCCCTTGGGGTCAGACCA  523

seq1  TTCTTCCAACATGTGTCCCAAAGAAAACCGTGGAGAATGTAGTAACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAACATGTGTCCCAAAGAAAACCGTGGAGAATGTAGTAACTGTA  573

seq1  TATGCCCTGGACACCCACCCCCACCCTTGAGCCTGTCTTGGGTGGGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTGGACACCCACCCCCACCCTTGAGCCTGTCTTGGGTGGGTGAG  623

seq1  AGCGGTACTCTGCCCTTCCTCGACTCCCATCTACCACACCAGGACTAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTACTCTGCCCTTCCTCGACTCCCATCTACCACACCAGGACTAACG  673

seq1  AGGGAGCAAAGAGAATTC  718
      ||||||||||||||||||
seq2  AGGGAGCAAAGAGAATTC  691