BAC Information

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BAC

Clone NameB6Ng01-117K16
Chromosome1 (Build37)17 (Build37)
Map Location 113,922,721 - 113,923,65643,621,885 - 43,622,353
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247
Downstream geneEG626897, LOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K16.bB6Ng01-117K16.g
ACCDH922349DH922350
length1,101940
definitionDH922349|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K16, 5' end.DH922350|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,922,721 - 113,923,656)(43,621,885 - 43,622,353)
sequence
gaattcctggataatttgggttagaaactttttatgctgtatattttctt
tgacctttgtgtcaatatattttatggtatcttctatgcctaagattctc
ctttctatcttttgtattctgttggtcatgcttgcatctgtggcttctga
tctctttcttaggtttttcattaccagggttgccacagtttgtgattcat
ttattgtttttacttccatttttaggtcttggggtgctctgttcaattct
ttcacccatttcactgtgttttcctgtatatatttaagggatttgttttt
tccactttaagggcttctacctctttgtgttttcctgcatttttaagtga
gttatttatattctccttaaagttctctattatcttcatgagatatgatt
tgatgttatcatcagacttttcaggtatgttgggatacccagagcctgat
gtggtggaagaagatgcttcttatggttccaaagtatatttgcttctgtt
gccccttaccatttgattaactctggtgttgccagcttgtttctgtttgg
agtttgccttctatgtccctgttgcagtacctctcctgagatacctgtgg
ctctgtctgcagtagatctcctgaaagacctgcaaactgtgagttgttga
gagtggcagacatgctgatatgccctgatggaggtacagacctgaagggt
atggaaatcttttttgaaacttctaaaatttaataaaacaggaaatgatg
tccaatttgatcagtgtgccaaattctgatgccagtacattgtatctatc
ctataaaccatacaataaaccaatagtttcttctggacagggaggtattt
acctttctccttcttattgtctggatttctgaaatttaccacacccccat
aagccttggatttctcatgttatatggaggaaaatataagtttgtgccaa
tattagaaaccagcatgtgatgtgtatagcaagacatacaaggacttaca
tgaaggatagctgagtccgtaaatcatgtttatgtatgtggtcatagagg
agaagagcatctcatcaagaatgtttctgggcatagcactctttccacac
t
gaattctctatttagctctatactcctctctgtaaataggattatttggt
tctctggagtctgccttcttgaggttttttttgttggtttgtttttttgt
ttttttgttttgtttttcgtttgtttgtttgtttgtttgtgttttctttt
tttttggtatattttggatattagttctctattagatatagggttggtaa
atatcttctcccaatctgtgagttgccatttttgtcctattgaccatgtc
cctgctttacagaagcttttcacttttatgaggtcccatttgttgattgt
tgttcttaaagcataatccattgttgttctgttctgtgctaaaagtgttc
aagaattttccgcactttctcttcttttagattcagtgtatctggtttat
gtggaggtccttcatccacttatacttgagctttgttcaaggagctaggt
atggataggtttgcattcttctacatgcagacctccagttgaaccattac
catttgttgaagatgctgtcttttttccattgaatgattttagtttcttt
gtcaaaggtcaagtgaccgtagatgtgtgagttcatttctgggtcttcaa
ttcaattcattgatctactttcttgtttctgtatcaatcccgtgaagttt
ttatcaccattgctctataatataacttgaggtcagggatggtatgtgtc
caaggtgactgagtgattaaggcaatggactgctcatttttttatagtat
tatcagctgaagaacattttagctaaagatgctatcatttaatcatctcc
ctttgaaccatctccttccttctttggtttgtcttcagactcatttcatt
tgtttggttcactattttcaacctacttcaactcccaaatgaattccaaa
gcattccattgcttaatctactagattttaaaaatactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113922721_113923656
seq2: B6Ng01-117K16.b_221_1144

seq1  GGTTGCCACAGTTTGTGATTCATTTATTGTTTTTACTTCCATTTTTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCACAGTTTGTGATTCATTTATTGTTTTTACTTCCATTTTTAGGT  50

seq1  CTTGGGGTGCTCTGTTCAATTCTTTCACCCATTTCACTGTGTTTTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTGCTCTGTTCAATTCTTTCACCCATTTCACTGTGTTTTCCTGT  100

seq1  ATATATTTAAGGGATTTGTTTTTTCCACTTTAAGGGCTTCTACCTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAAGGGATTTGTTTTTTCCACTTTAAGGGCTTCTACCTCTTTG  150

seq1  TGTTTTCCTGCATTTTTAAGTGAGTTATTTATATTCTCCTTAAAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGCATTTTTAAGTGAGTTATTTATATTCTCCTTAAAGTTCTC  200

seq1  TATTATCTTCATGAGATATGATTTGATGTTATCATCAGACTTTTCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTTCATGAGATATGATTTGATGTTATCATCAGACTTTTCAGGTA  250

seq1  TGTTGGGATACCCAGAGCCTGATGTGGTGGAAGAAGATGCTTCTTATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATACCCAGAGCCTGATGTGGTGGAAGAAGATGCTTCTTATGGT  300

seq1  TCCAAAGTATATTTGCTTCTGTTGCCCCTTACCATTTGATTAACTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTATATTTGCTTCTGTTGCCCCTTACCATTTGATTAACTCTGGT  350

seq1  GTTGCCAGCTTGTTTCTGTTTGGAGTTTGCCTTCTATGTCCCTGTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAGCTTGTTTCTGTTTGGAGTTTGCCTTCTATGTCCCTGTTGCAG  400

seq1  TACCTCTCCTGAGATACCTGTGGCTCTGTCTGCAGTAGATCTCCTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCTGAGATACCTGTGGCTCTGTCTGCAGTAGATCTCCTGAAAG  450

seq1  ACCTGCAAACTGTGAGTTGTTGAGAGTGGCAGACATGCTGATATGCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAACTGTGAGTTGTTGAGAGTGGCAGACATGCTGATATGCCCTG  500

seq1  ATGGAGGTACAGACCTGAAGGGTATGGAAATCTTTTTTGAAACTTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTACAGACCTGAAGGGTATGGAAATCTTTTTTGAAACTTCTAAA  550

seq1  ATTTAATAAAACAGGAAATGATGTCCAATTTGATCAGTGTGCCAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAAACAGGAAATGATGTCCAATTTGATCAGTGTGCCAAATTCT  600

seq1  GATGCCAGTACATTGTATCTATCCTATAAACCATACAATAAACCAATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCAGTACATTGTATCTATCCTATAAACCATACAATAAACCAATAGT  650

seq1  TTCTTCTGGACAGGGAGGTATTTACCTTTCTCCTTCTTATTGTCTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGACAGGGAGGTATTTACCTTTCTCCTTCTTATTGTCTGGATT  700

seq1  TCTGAAATTTACCACACCCCCATAAGCCTTGGATTTCTCATGTTATAATG  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTGAAATTTACCACACCCCCATAAGCCTTGGATTTCTCATGTTAT-ATG  749

seq1  GAGGAAAATATAAGTTTGTTGCCAATATTAGAAACCAGCATGTGATGTTG  800
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  GAGGAAAATATAAGTTTG-TGCCAATATTAGAAACCAGCATGTGATG-TG  797

seq1  TATAGGCAAGACATACAAGGAACTTACATGAAAGAATAGCTGGAGTCCCG  850
      |||| ||||||||||||||| ||||||||| ||| |||||| |||| |||
seq2  TATA-GCAAGACATACAAGG-ACTTACATG-AAGGATAGCT-GAGT-CCG  842

seq1  TAAATCATGTTTATGTAATGT-GTCATAGAGAAGACAGAGCATCTCATCA  899
      |||||||||||||||| |||| ||||||||| ||| ||||||||||||||
seq2  TAAATCATGTTTATGT-ATGTGGTCATAGAGGAGA-AGAGCATCTCATCA  890

seq1  AGAAATGTTTCCTGGGCATCAGCAACTC-TTCCACACT  936
      || ||||||| |||||||| ||| |||| |||||||||
seq2  AG-AATGTTT-CTGGGCAT-AGC-ACTCTTTCCACACT  924

seq1: chr17_43621885_43622353
seq2: B6Ng01-117K16.g_156_673 (reverse)

seq1  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50
      ||| ||||||||||||||||||||||| |||||| ||| |||||||||| 
seq2  AATTGAATTGAAGACCCAGAAATGAACTCACACATCTACGGTCACTTGAC  50

seq1  CTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100
      ||| ||||| | | | |||| ||| || ||||| ||||||||||| ||||
seq2  CTTTGACAAAGAAACTAAAATCATTCAATGGAAAAAAGACAGCATCTTCA  100

seq1  ATAAATG--------TCAA---GACGTCT-----TAAGAAAAAGCACACA  134
      | |||||        ||||   || ||||     ||  | || ||| || 
seq2  ACAAATGGTAATGGTTCAACTGGAGGTCTGCATGTAGAAGAATGCAAAC-  149

seq1  GTAACAATTTCCTATCGTCACCAAC-AGGC---------AGTGGGGGA--  172
       || | | | |||| |  |   ||| | ||         |||||  ||  
seq2  CTATCCA-TACCTAGCTCCTTGAACAAAGCTCAAGTATAAGTGGATGAAG  198

seq1  -AACTGCACTTATAC-----ATTTTCAAT---AAAGAAAGCAAATAGTGC  213
       | || ||| || ||     |   | |||   ||||||   |||  | | 
seq2  GACCTCCACATAAACCAGATACACTGAATCTAAAAGAAGAGAAAGTGCGG  248

seq1  AAATTAGTTAGATCTCTGTTGATTCACCA-ATTACACACTCAGGATCAGG  262
      ||| |  || || | || ||    ||  | |  ||| ||   |||| | |
seq2  AAAATTCTT-GAACACTTTTAGCACAGAACAGAACA-ACAATGGATTATG  296

seq1  ----AAGGACAA-GGTGA-------GGAC------AAACTGAGAAG-GAC  293
          ||| ||||   | |       ||||      ||| ||| |||   |
seq2  CTTTAAGAACAACAATCAACAAATGGGACCTCATAAAAGTGAAAAGCTTC  346

seq1  TGTCCAGCTGGGAGGAGTGGCTCCTGCCTTTAATCTGAAATGCAGAGGCA  343
      |||  ||| ||||         | ||   | |||  || |   |  ||||
seq2  TGTAAAGCAGGGA---------CATG--GTCAATAGGACA-AAAATGGCA  384

seq1  AGCCAAACTCTTG----AGTTCAAGACCAGCCTGAAATACAA-AGTGAA-  387
      |  || |   | |    || |    |||| ||  | ||  || || ||| 
seq2  ACTCACAGATTGGGAGAAGATATTTACCAACCCTATATCTAATAGAGAAC  434

seq1  TCACCTACAAAGTGAGTTCCAGAACA----GCTAGAGATACATGCAGAAA  433
      | |  | |||| |   | ||| || |       | | | |||  || | |
seq2  TAATATCCAAAAT--ATACCAAAAAAAAAGAAAACACAAACAAACAAACA  482

seq1  CCCTATCAAAAACAAAAACAAAAAAACAAAAAAACA  469
        | | | ||||  ||||||||||||||||||||||
seq2  AACAAACGAAAAACAAAACAAAAAAACAAAAAAACA  518