BAC Information

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BAC

Clone NameB6Ng01-117P23
Chromosome1 (Build37)
Map Location 32,332,594 - 32,476,217
singlet/doubletdoublet
Overlap geneKhdrbs2
Upstream geneEG624262, LOC624275, LOC666056, LOC100041238
Downstream geneEG408191, EG633498, LOC213711, LOC100040828, EG666108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P23.bB6Ng01-117P23.g
ACCDH922593DH922594
length1,0981,071
definitionDH922593|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P23, 5' end.DH922594|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,475,124 - 32,476,217)(32,332,594 - 32,333,674)
sequence
gaattcagagggtcattttcatgaagttgcttctctgcttccacctttgt
tttgtttcctgggatgaaactcagccttgtggggtaagttctctttcctg
ctaagccatcccactgccccctgaactgaactttgaatccttcacacttt
ctatttcagaggcagtgtcttaagtttcagtcatctgttaattattaagt
attagcaaaactgcccaattttcttaatgaaaactgagaatctatttaac
aacacagaacactatcactattttgatttaacattctgactagatttggg
aaatatatattaatttagggttctaagaagttcctgacaccaactttatc
atagatcctgctctataaagattcaaaagccataatcctcccaaaatatg
ctgttgtcctaatatctaaattatgcaagaaaggaacactgaaataaaac
agtggtcagttacatccaggttttccagtgtaagcagggaaatggaaatg
agttcctcactgaagcatcaattacataattttagaattagagagtttac
tctagactatcaatctctattttaaggtgaactaatgaacaataattttt
agtagagctgattcttaaaacatgaagatttgaaagtgacaacgttcagt
ttaataatattttactgactaaagcattacagattttaatttggaggcat
ttacactagtttcagtaactagtcaatttttcttcatcacctttcttcaa
caatggtttcttcaacacctaatttaattgcagaaagtgaattgatttct
tacatgcttaagcatgcagaagtttcataaggaatttcctgcactcacag
tggtagttctgatgaatgtagcctctgggcatagggtaggtttagtaatt
atgcctaatgtaacaagaagacgaacagttcctttgatggaaaacacttt
ttacagaggaagaagatgtcagttgagtatcagtgtcctagccctgatta
ggtctcttgtattgttctagaattaattcagtgatctggaatattccctt
taatatatataaatgtatcatcatctaaatccctctctcctcctctag
gaattcatctgcgatacattattggtttgctaccaacttctaatactttg
agatctaagaagacaagaccgagcttagtcagcttaaggccagattctct
ttaactacactgttggtaaacctggagggtttgtttgtttgtttgtttgt
tcatcatttctctctaacttgagatatcatcaatcagttcctatgcactg
tatcttcttgcacttatccttgcatggaatgttgtttaccattcttataa
tgcactttgcttgtattatgtcagctaatgggatttattctccataagct
caactatgtaatgaacgagtgttgagaaaattacttctgagctgtagtgc
actagatcatgcttgggagcccagactcccataggaacacttgctcctac
tactcactgctttccactgtgtagcttggtaaagggccagatgagcagat
caggagagaactgtgggagaatgcctaaaaattatactgcatagggggtc
cctagcttagaataaggaagtgctcctcagaggacctgaagaacatttgg
gaattcctaggtagaagagaagtttaggaagagaacagagcttcaaggtg
agcctgctgtagggagatgcaggtatatactaagacacctctgcataaca
gctctttaaggcctaacagaaatttctgttgttttatctttactttttct
tttctcatcttggtcttatttctatgactatgatggaacctgtgcatgct
tcgatgatgctgtcacataatacctactgttttaaggcattgtgcttgtc
tccaagactcataaacttcttgaccttaaaatggattcattttttaatat
tagatattttcttcattacatttcaaatgctatcccctttcctagtttcc
tcaccaaaaatccccatccctctcctcacttctgctcccaacccaccact
tcttacttctggtcctggcattctctatactgggcatagaatcttggcag
accatcaagtctagcatgtagcatagttccccacaaaggagcattagtga
acaaattaacaatggtagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32475124_32476217
seq2: B6Ng01-117P23.b_48_1145 (reverse)

seq1  CTAGA----GAGAGAGAGA-TTAGATGATGATAACATTTATATATATTAA  45
      |||||    ||||||| || |||||||||||| |||||||||||||||||
seq2  CTAGAGGAGGAGAGAGGGATTTAGATGATGAT-ACATTTATATATATTAA  49

seq1  AGGTGATTATT-CAGATCAACCTG-ATTAATTCTAGAACAATACAAGAGA  93
      ||| || |||| |||||||  ||| |||||||||||||||||||||||||
seq2  AGG-GAATATTCCAGATCA--CTGAATTAATTCTAGAACAATACAAGAGA  96

seq1  CCTAATCA-GGCTAGGACACTGATACTCAACTGACATCTTCTTCCTCTGT  142
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAGGGCTAGGACACTGATACTCAACTGACATCTTCTTCCTCTGT  146

seq1  -AAAAGTGTTTTTCCATCAAAGGAACTGTTCGTCTTCTTGTTACATTAGG  191
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTG-TTTTCCATCAAAGGAACTGTTCGTCTTCTTGTTACATTAGG  195

seq1  CATAATTACTAAACCTACCCTATGCCCAGAGGCTACATTCATCAGAACTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACTAAACCTACCCTATGCCCAGAGGCTACATTCATCAGAACTA  245

seq1  CCACTGTGAGTGCAGGAAATTCCTTATGAAACTTCTGCATGCTTAAGCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGAGTGCAGGAAATTCCTTATGAAACTTCTGCATGCTTAAGCAT  295

seq1  GTAAGAAATCAATTCACTTTCTGCAATTAAATTAGGTGTTGAAGAAACCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATCAATTCACTTTCTGCAATTAAATTAGGTGTTGAAGAAACCA  345

seq1  TTGTTGAAGAAAGGTGATGAAGAAAAATTGACTAGTTACTGAAACTAGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGAAAGGTGATGAAGAAAAATTGACTAGTTACTGAAACTAGTG  395

seq1  TAAATGCCTCCAAATTAAAATCTGTAATGCTTTAGTCAGTAAAATATTAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCTCCAAATTAAAATCTGTAATGCTTTAGTCAGTAAAATATTAT  445

seq1  TAAACTGAACGTTGTCACTTTCAAATCTTCATGTTTTAAGAATCAGCTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAACGTTGTCACTTTCAAATCTTCATGTTTTAAGAATCAGCTCT  495

seq1  ACTAAAAATTATTGTTCATTAGTTCACCTTAAAATAGAGATTGATAGTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTATTGTTCATTAGTTCACCTTAAAATAGAGATTGATAGTCT  545

seq1  AGAGTAAACTCTCTAATTCTAAAATTATGTAATTGATGCTTCAGTGAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAACTCTCTAATTCTAAAATTATGTAATTGATGCTTCAGTGAGGA  595

seq1  ACTCATTTCCATTTCCCTGCTTACACTGGAAAACCTGGATGTAACTGACC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTCCATTTCCCTGCTTACACTGGAAAACCTGGATGTAACTGACC  645

seq1  ACTGTTTTATTTCAGTGTTCCTTTCTTGCATAATTTAGATATTAGGACAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTATTTCAGTGTTCCTTTCTTGCATAATTTAGATATTAGGACAA  695

seq1  CAGCATATTTTGGGAGGATTATGGCTTTTGAATCTTTATAGAGCAGGATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATTTTGGGAGGATTATGGCTTTTGAATCTTTATAGAGCAGGATC  745

seq1  TATGATAAAGTTGGTGTCAGGAACTTCTTAGAACCCTAAATTAATATATA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAAGTTGGTGTCAGGAACTTCTTAGAACCCTAAATTAATATATA  795

seq1  TTTCCCAAATCTAGTCAGAATGTTAAATCAAAATAGTGATAGTGTTCTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAATCTAGTCAGAATGTTAAATCAAAATAGTGATAGTGTTCTGT  845

seq1  GTTGTTAAATAGATTCTCAGTTTTCATTAAGAAAATTGGGCAGTTTTGCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAATAGATTCTCAGTTTTCATTAAGAAAATTGGGCAGTTTTGCT  895

seq1  AATACTTAATAATTAACAGATGACTGAAACTTAAGACACTGCCTCTGAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAATAATTAACAGATGACTGAAACTTAAGACACTGCCTCTGAAA  945

seq1  TAGAAAGTGTGAAGGATTCAAAGTTCAGTTCAGGGGGCAGTGGGATGGCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGTGAAGGATTCAAAGTTCAGTTCAGGGGGCAGTGGGATGGCT  995

seq1  TAGCAGGAAAGAGAACTTACCCCACAAGGCTGAGTTTCATCCCAGGAAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAAAGAGAACTTACCCCACAAGGCTGAGTTTCATCCCAGGAAAC  1045

seq1  AAAACAAAGGTGGAAGCAGAGAAGCAACTTCATGAAAATGACCCTCTGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGGTGGAAGCAGAGAAGCAACTTCATGAAAATGACCCTCTGAA  1095

seq1  TTC  1094
      |||
seq2  TTC  1098

seq1: chr1_32332594_32333674
seq2: B6Ng01-117P23.g_69_1139

seq1  GAATTCATCTGCGATACATTATTGGTTTGCTACCAACTTCTAATACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGCGATACATTATTGGTTTGCTACCAACTTCTAATACTTTG  50

seq1  AGATCTAAGAAGACAAGACCGAGCTTAGTCAGCTTAAGGCCAGATTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAAGAAGACAAGACCGAGCTTAGTCAGCTTAAGGCCAGATTCTCT  100

seq1  TTAACTACACTGTTGGTAAACCTGGAGGGTTTGTTTGTTTGTTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACACTGTTGGTAAACCTGGAGGGTTTGTTTGTTTGTTTGTTTGT  150

seq1  TCATCATTTCTCTCTAACTTGAGATATCATCAATCAGTTCCTATGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTCTCTCTAACTTGAGATATCATCAATCAGTTCCTATGCACTG  200

seq1  TATCTTCTTGCACTTATCCTTGCATGGAATGTTGTTTACCATTCTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTGCACTTATCCTTGCATGGAATGTTGTTTACCATTCTTATAA  250

seq1  TGCACTTTGCTTGTATTATGTCAGCTAATGGGATTTATTCTCCATAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTGCTTGTATTATGTCAGCTAATGGGATTTATTCTCCATAAGCT  300

seq1  CAACTATGTAATGAACGAGTGTTGAGAAAATTACTTCTGAGCTGTAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATGTAATGAACGAGTGTTGAGAAAATTACTTCTGAGCTGTAGTGC  350

seq1  ACTAGATCATGCTTGGGAGCCCAGACTCCCATAGGAACACTTGCTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATCATGCTTGGGAGCCCAGACTCCCATAGGAACACTTGCTCCTAC  400

seq1  TACTCACTGCTTTCCACTGTGTAGCTTGGTAAAGGGCCAGATGAGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACTGCTTTCCACTGTGTAGCTTGGTAAAGGGCCAGATGAGCAGAT  450

seq1  CAGGAGAGAACTGTGGGAGAATGCCTAAAAATTATACTGCATAGGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAACTGTGGGAGAATGCCTAAAAATTATACTGCATAGGGGGTC  500

seq1  CCTAGCTTAGAATAAGGAAGTGCTCCTCAGAGGACCTGAAGAACATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTAGAATAAGGAAGTGCTCCTCAGAGGACCTGAAGAACATTTGG  550

seq1  GAATTCCTAGGTAGAAGAGAAGTTTAGGAAGAGAACAGAGCTTCAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTAGAAGAGAAGTTTAGGAAGAGAACAGAGCTTCAAGGTG  600

seq1  AGCCTGCTGTAGGGAGATGCAGGTATATACTAAGACACCTCTGCATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGTAGGGAGATGCAGGTATATACTAAGACACCTCTGCATAACA  650

seq1  GCTCTTTAAGGCCTAACAGAAATTTCTGTTGTTTTTATCTTTACTTTTTC  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTCTTTAAGGCCTAACAGAAATTTCTGTTG-TTTTATCTTTACTTTTTC  699

seq1  TTTTCTCATCTTGGTCTTATTTCTATGACTATGATGGAACCTGTGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATCTTGGTCTTATTTCTATGACTATGATGGAACCTGTGCATGC  749

seq1  TTCGATGATGCTGTCACATAATACCTACTGTTTTAAGGCATTGTGCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGATGCTGTCACATAATACCTACTGTTTTAAGGCATTGTGCTTGT  799

seq1  CTCCAAGACTCATAAACTTCTTGACCTTAAAATGGATTCATTTTTTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGACTCATAAACTTCTTGACCTTAAAATGGATTCATTTTTTAATA  849

seq1  TTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCCTTTCCTAGTTT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAGATATTTTCTTCA-TTACATTTCAAATGCTATCCCCTTTCCTAGTTT  898

seq1  CCTCACCAAAAATCCCCATCCCCTCTCCCCAC-TCTGCTCCCCAACCCAC  949
      ||||||||||||||||||| |||||||| ||| |||||| ||||||||||
seq2  CCTCACCAAAAATCCCCAT-CCCTCTCCTCACTTCTGCT-CCCAACCCAC  946

seq1  CCACTCCTACTTCCTGGCCCTGGCATTCCTCTATACTGGGGCATAGAATC  999
      |   || ||||| |||| ||||||||| ||||||||| ||||||||||||
seq2  CACTTCTTACTT-CTGGTCCTGGCATT-CTCTATACT-GGGCATAGAATC  993

seq1  TTTGCAGGACCACCAAAGTCTTAGCATGTAGCATAGTTCCACACAAAGAA  1049
      || ||| ||||| | ||||| ||||||||||||||||||| ||||||| |
seq2  TTGGCA-GACCATC-AAGTC-TAGCATGTAGCATAGTTCCCCACAAAGGA  1040

seq1  GCATTAGTGAACAAATAAACAATTGGTAGTTA  1081
      |||||||||||||||| ||||| |||||||||
seq2  GCATTAGTGAACAAATTAACAA-TGGTAGTTA  1071