BAC Information

Click to search

BAC

Clone NameB6Ng01-118M15
Chromosome6 (Build37)1 (Build37)
Map Location 146,656,386 - 146,656,910147,841,556 - 147,842,620
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRassf8, Bhlhb3, Sspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175
Downstream geneStk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M15.bB6Ng01-118M15.g
ACCDH923177DH923178
length1,0081,051
definitionDH923177|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M15, 5' end.DH923178|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,656,386 - 146,656,910)(147,841,556 - 147,842,620)
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaattgatctttcttcttt
tccctttttcctctttttcttctaatctctctccaggtattcctacctaa
ccttaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagcttgtcctgaatttcatctagaatccgccctatcttaaccac
ttgataacatgtgaaaaggaacaaaagggctcctaacaccagaaaaaatt
caaggccaaacatattccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaagatcagacttacctcgtaaagctgtactcactggtac
tctcgttccccagctgaaaagttctgaattcatacagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgcgccagtcccgagtttttttctcgtccc
ggaattcggcaccaattgttattagacgcgttctcacgaccggccaggaa
gaacaccacagaccagaatcttctgcggcaaaactttattgcttacatct
tcaggagccagagtgcaagaagcaagagagagagaaaacgaaaccccgtc
cctattaaagagaattctccttcgcctaggacgtgtcactccctgattgg
ctgcagcccatcggccgagttgacgtcacggggaaaggcagagcacatgg
agtgaagaaccacccttggcacatgcgcagattatttgtttaccacttag
aacacagctgtcagcgccatcttgtaacggcgaatgtgggcgcggctccc
aacagcaaagagttgttattttgcagaaatcaaacatgctggggtctacc
attcttta
gaattcactttgtagaccaggctggtctcgaactcagaaatctgcctgcc
tcttcttcccaagtgctgggattaaaggtgtgcgccaccatgcccaggaa
agctccatttctactgactagtttgtatagtgctggcaggtgctatcaat
gctcccagaggacaaaagtagtcatctttcttgtccgaatatgaacattg
agagctacgatgataggccacatctcacctctttctagattcaaagactt
tctctacctactcaactctgtgtgcttttgttttcctcacaaagtccaat
tcatgctgctcataaattcttgaatgtgtggtcttctactcgagcatgct
caacccacaaggggatacctagtcaaagaaaagttacaatttctatctca
gtaaaaatcaattaacaatattgattaattgaattaaagctcagttaaag
gtagaactccatgcccagctacccatttgatttggttacattttttcttg
gatttgagcttgcatatgacttgtctgtgttgtcttttcttgaaattggt
gccaggtattggttttattttgtgcactgagcttcatagctaaccataaa
gtattggaccatttctatgacctttgttccactattgctcaactgagatg
tgggttgaatttgaccaaaattcattggaagggtaaatacattgctacag
aactaattaatacaaagtgaggagggaggaaaatatagtcaaaatatata
gcctgaggagaaactactcttgggcatatacccacaagattcctcaccat
gctgcagggggacatgctcttctatgtttatagcagcctcatttgtgata
gccagatgttccacaaaagaatggatacagaaaatgtggctcatttacac
aatggagtacctctcagctattagacaaggaaaccctgagtgtacaggca
atggatggactagaaaatatcatcctgagtgagtactcagatcaaatgtc
atgcatggctatatccaatagtagatattagcaaaaaaaaaaaaaaaaag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146656386_146656910
seq2: B6Ng01-118M15.b_55_528 (reverse)

seq1  AATTCAGAACTTTTCAGCTGGGGGAACAGAGTACCAGTGAGTACAGCTTT  50
      ||||||||||||||||||||||| |  |||||||||||||||||||||||
seq2  AATTCAGAACTTTTCAGCTGGGGAACGAGAGTACCAGTGAGTACAGCTTT  50

seq1  ACGAGGTAAGTCTGGTCTTAAACTTTCTAACGAAATTCAAGACAGTCTAT  100
      |||||||||||||| |||| |||||||||| |||||||||||||||||||
seq2  ACGAGGTAAGTCTGATCTTGAACTTTCTAAGGAAATTCAAGACAGTCTAT  100

seq1  CAGAAGTAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTT  150
      ||||||||||||||||                                  
seq2  CAGAAGTAAAGTGGAA----------------------------------  116

seq1  TCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTT  200
                                                        
seq2  --------------------------------------------------  116

seq1  GCAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGT  250
            |||||||||||||||| ||| ||| ||||||| |||||||||||
seq2  ------TATGTTTGGCCTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGT  160

seq1  TCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAA  300
      |||||||||||||||||||||||||||||  |||||||||||| ||||||
seq2  TCCTTTTCACATGTTATCAAGTGGTTAAGATAGGGCGGATTCTAGATGAA  210

seq1  GTTCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAA  350
       |||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  ATTCAGGACAAGCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAA  260

seq1  GAGAAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTG  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTG  310

seq1  AACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGA  450
      |||||||||||||||| |||| ||||| |||||||||| |||||||||||
seq2  AACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAGAGATTAGA  360

seq1  AGGAAGGAGAAGGAAAAA--GAAAAGAAAAAAGATCAATTAGAGG-----  493
      || ||  |  ||||||||  |||||||| ||||||||||||| ||     
seq2  AGAAA--AAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCGGAGGTC  408

seq1  ----------------------------------AGCCAGTTCTTAGTAG  509
                                        |||||| |||||||||
seq2  TCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTCTTAGTAG  458

seq1  TTCTGAATCAGATGAA  525
      ||||||| ||||||||
seq2  TTCTGAAGCAGATGAA  474

seq1: chr1_147841556_147842620
seq2: B6Ng01-118M15.g_69_1119

seq1  GAATTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCTGCCTGCC  50

seq1  TCTTCTTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCAGGAA  100

seq1  AGCTCCATTTCTACTGACTAGTTTGTATAGTGCTGGCAGGTGCTATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATTTCTACTGACTAGTTTGTATAGTGCTGGCAGGTGCTATCAAT  150

seq1  GCTCCCAGAGGACAAAAGTAGTCATCTTTCTTGTCCGAATATGAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGAGGACAAAAGTAGTCATCTTTCTTGTCCGAATATGAACATTG  200

seq1  AGAGCTACGATGATAGGCCACATCTCACCTCTTTCTAGATTCAAAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACGATGATAGGCCACATCTCACCTCTTTCTAGATTCAAAGACTT  250

seq1  TCTCTACCTACTCAACTCTGTGTGCTTTTGTTTTCCTCACAAAGTCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCTACTCAACTCTGTGTGCTTTTGTTTTCCTCACAAAGTCCAAT  300

seq1  TCATGCTGCTCATAAATTCTTGAATGTGTGGTCTTCTACTCGAGCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGCTCATAAATTCTTGAATGTGTGGTCTTCTACTCGAGCATGCT  350

seq1  CAACCCACAAGGGGATACCTAGTCAAAGAAAAGTTACAATTTCTATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACAAGGGGATACCTAGTCAAAGAAAAGTTACAATTTCTATCTCA  400

seq1  GTAAAAATCAATTAACAATATTGATTAATTGAATTAAAGCTCAGTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATCAATTAACAATATTGATTAATTGAATTAAAGCTCAGTTAAAG  450

seq1  GTAGAACTCCATGCCCAGCTACCCATTTGATTTGGTTACATTTTTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCCATGCCCAGCTACCCATTTGATTTGGTTACATTTTTTCTTG  500

seq1  GATTTGAGCTTGCATATGACTTGTCTGTGTTGTCTTTTCTTGAAATTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGCTTGCATATGACTTGTCTGTGTTGTCTTTTCTTGAAATTGGT  550

seq1  GCCAGGTATTGGTTTTATTTTGTGCACTGAGCTTCATAGCTAACCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTATTGGTTTTATTTTGTGCACTGAGCTTCATAGCTAACCATAAA  600

seq1  GTATTGGACCATTTCTATGACCTTTGTTCCACTATTGCTCAACTGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGACCATTTCTATGACCTTTGTTCCACTATTGCTCAACTGAGATG  650

seq1  TGGGTTGAATTTGACCAAAATTCATTGGAAGGGTAAATACATTGCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAATTTGACCAAAATTCATTGGAAGGGTAAATACATTGCTACAG  700

seq1  AACTAATTAATACAAAGTGAGGAGGGAGGAAAATATAGTCAAAATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTAATACAAAGTGAGGAGGGAGGAAAATATAGTCAAAATATATA  750

seq1  GCCTGAGGAGAAACTACTCTTGGGCATATACCCACAAGATTCCTCACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGAGAAACTACTCTTGGGCATATACCCACAAGATTCCTCACCAT  800

seq1  GCTGCAGGGGGACATGCTCTTCTATGTTTATAGCAGCCTCATTTGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGGGGACATGCTCTTCTATGTTTATAGCAGCCTCATTTGTGATA  850

seq1  GCCAGATGTTCCACAAAAGAATGGATACAGAAAATGTGGCTCATTTACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATGTTCCACAAAAGAATGGATACAGAAAATGTGGCTCATTTACAC  900

seq1  AATGGAGTACCTCTCAGCTATTAAGAACAAGGAAACCCTGAGTGTTACAG  950
      |||||||||||||||||||||||   |||||||||||||||||| |||||
seq2  AATGGAGTACCTCTCAGCTATTA--GACAAGGAAACCCTGAGTG-TACAG  947

seq1  GCAAATGGATGGAACTAGAAAATATCATCCTGAGTGAAGTAACTCAGATC  1000
      || ||||||||| ||||||||||||||||||||||| ||| |||||||||
seq2  GC-AATGGATGG-ACTAGAAAATATCATCCTGAGTG-AGT-ACTCAGATC  993

seq1  CAAAATGTCATGCATGGCATATAATCACAAATAAGTAGATATTAGCAAAA  1050
        |||||||||||||||| ||||    | ||| |||||||||||||||||
seq2  --AAATGTCATGCATGGC-TATA---TCCAAT-AGTAGATATTAGCAAAA  1036

seq1  AAAAAAAAAAAAAGT  1065
      |||||||||||||||
seq2  AAAAAAAAAAAAAGT  1051