BAC Information

Click to search

BAC

Clone NameB6Ng01-118N11
Chromosome1 (Build37)
Map Location 49,843,563 - 49,844,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N11.bB6Ng01-118N11.g
ACCDH923217DH923218
length1,1731,131
definitionDH923217|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N11, 5' end.DH923218|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctctt
ctattcaggaatttttcccctatgcccatatcttcgaggcttttcaccac
tttctcctctataagcttcagtgtctctggttttatgtgaagttccttga
tccatgtagatttgaccttagtacatggagataggaatggatcgattcgc
attcttctatatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctttccatcttctgaagtcttcttcaatttctttc
ttcaggcacttgtagttctggtattacagatatttcatttgcttgcttag
agttacaaccaaaatattgtatactatttggaacttattgtgtagggtgt
tgcttctttagtttatttttcctaccatctctcctttgtatagaggaagg
ctactgatttgtttgagttaattttatatccagccacattcctgaagttg
tttatcagctataggatttctttgttagaattttgggagttgtatatgca
tactgtcatatcatcccttaagtagtgatactttaaattcttcctttcta
tttgtatcactttgtcatttttccccttgtctaaaggtcaaataaaactt
tgagtatattattgaataaatagtgccagaatgggcagccttgtcttgtt
cctgatatagtgggggtgcttcaagtttcttctccattaaatctgatgtt
ggctgttgatttgttgacctgctttattattgaatagtattaccctaaaa
ttcccccatcctccaggggttttaaatggataagggagtgttatttatcc
aagttcttgtttctgccatgttt
gaattctattattatctgaggtatagccaaacatccttttataagtaaat
aataagaggatgattaaaaaccagaatttcagcatgtgaataccttacaa
attggaaatatgaatataactgacctgcagaatttggacgtagtttttag
tgtttcactgtgtttgaatcaataaattatactttcagattcttatattt
tctttgatattctctatcatttttttctatttctgttctttctctttcta
atctactgtttattttataccatcaattacattgaaactttgaaaattct
aattaatcttcaagagatgcatcatacatacactcagatattagttatgt
ttcctgttactctgataaaatggtcagaaaaaagtctatttaacatagaa
agggtttgttttgtctcaaaggactttcctcttcccattatgaggaagtc
atgacaagaagatactgagctatccaaattccaaaggcatgcatgtgtta
ggatcccagcattgcatctctgaataatgatgccctagtctcaaatacta
tgcaaaaaccaagagcatttattcagctgaatttccttcatgcagtattc
tccccatttgagaatggatacctccggtagactctgaaagcttagctttt
cttttcaattggggaaatatcagggagggatatctgcccctttaccttga
ttggttagctctctctctagaggtctgacgagttttatggttggttaggc
tctggagacttaaagatgttgcttactcattctaggtacctattcttact
ttagaccatatgataaggtatgctcggattggcttcccacagctgtgttt
ggctgaccacatgtttctggatccaggttctcatttctgggaaacagaaa
cttagtcctagtatcccaaactgctagtttgtagcctgacatgaagtagc
ttggctctgctactctctcaatgctagtgctagcacagtgaagtagtgct
ccacagagtatgagactcatcatcatatcaggaaataatatctcacaagt
gtctatcatctaatatagataatcctaatcgaaattgtcatgtggactac
caagagtatcatacaattcgattggacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49843563_49844726
seq2: B6Ng01-118N11.g_68_1198 (reverse)

seq1  TGTTGTACATAATCGAATTGTAATGATAACTCTTGGTAGTCCACATGACA  50
      |||||| |  ||||||||||| ||||| ||||||||||||||||||||||
seq2  TGTTGTCC--AATCGAATTGT-ATGAT-ACTCTTGGTAGTCCACATGACA  46

seq1  TATTTAGAATTAAGGAATTATCTATATTAGATGATTAGGACAAACTTGTG  100
       |||| | ||||  | |||||||||||||||||||    | | |||||||
seq2  -ATTTCG-ATTA--GGATTATCTATATTAGATGAT----AGACACTTGTG  88

seq1  AGATATTATTTTCCCTGAATTAATTGAATGAATTGGAGTCTTCATACTCT  150
      |||||||||||  |||||  ||  || ||||    ||||| |||||||||
seq2  AGATATTATTT--CCTGA--TA--TG-ATGA---TGAGTC-TCATACTCT  127

seq1  GTGGAGCACCTACCTTCCACTGTGGCTAAGCACTAGCATTTGAGAGGAGT  200
      |||||||| ||||  | |||||| ||| |||||||||| |||||| ||| 
seq2  GTGGAGCA-CTAC--TTCACTGT-GCT-AGCACTAGCA-TTGAGA-GAG-  169

seq1  TAGCCAGAGCCAAGCTAACTTCATGTCAGGCTACAAACTAGCAGTTTGGG  250
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAG-CAGAGCCAAGCT-ACTTCATGTCAGGCTACAAACTAGCAGTTTGGG  217

seq1  ATACTAGGACTAAGTTTCTGTTTCCCAGAAATGAGAACCTGGATCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGGACTAAGTTTCTGTTTCCCAGAAATGAGAACCTGGATCCAGAA  267

seq1  ACATGTGGTCAGCCAAACACAGCTGTGGGAAGCCAATCCGAGCATACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTCAGCCAAACACAGCTGTGGGAAGCCAATCCGAGCATACCTT  317

seq1  ATCATATGGTCTAAAGTAAGAATAGGTACCTAGAATGAGTAAGCAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGGTCTAAAGTAAGAATAGGTACCTAGAATGAGTAAGCAACATC  367

seq1  TTTAAGTCTCCAGAGCCTAACCAACCATAAAACTCGTCAGACCTCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTCCAGAGCCTAACCAACCATAAAACTCGTCAGACCTCTAGAG  417

seq1  AGAGAGCTAACCAATCAAGGTAAAGGGGCAGATATCCCTCCCTGATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTAACCAATCAAGGTAAAGGGGCAGATATCCCTCCCTGATATTT  467

seq1  CCCCAATTGAAAAGAAAAGCTAAGCTTTCAGAGTCTACCGGAGGTATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTGAAAAGAAAAGCTAAGCTTTCAGAGTCTACCGGAGGTATCCA  517

seq1  TTCTCAAATGGGGAGAATACTGCATGAAGGAAATTCAGCTGAATAAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATGGGGAGAATACTGCATGAAGGAAATTCAGCTGAATAAATGC  567

seq1  TCTTGGTTTTTGCATAGTATTTGAGACTAGGGCATCATTATTCAGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTTTGCATAGTATTTGAGACTAGGGCATCATTATTCAGAGATG  617

seq1  CAATGCTGGGATCCTAACACATGCATGCCTTTGGAATTTGGATAGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGGGATCCTAACACATGCATGCCTTTGGAATTTGGATAGCTCAG  667

seq1  TATCTTCTTGTCATGACTTCCTCATAATGGGAAGAGGAAAGTCCTTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTGTCATGACTTCCTCATAATGGGAAGAGGAAAGTCCTTTGAG  717

seq1  ACAAAACAAACCCTTTCTATGTTAAATAGACTTTTTTCTGACCATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAACCCTTTCTATGTTAAATAGACTTTTTTCTGACCATTTTAT  767

seq1  CAGAGTAACAGGAAACATAACTAATATCTGAGTGTATGTATGATGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAACAGGAAACATAACTAATATCTGAGTGTATGTATGATGCATCT  817

seq1  CTTGAAGATTAATTAGAATTTTCAAAGTTTCAATGTAATTGATGGTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATTAATTAGAATTTTCAAAGTTTCAATGTAATTGATGGTATAA  867

seq1  AATAAACAGTAGATTAGAAAGAGAAAGAACAGAAATAGAAAAAAATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTAGATTAGAAAGAGAAAGAACAGAAATAGAAAAAAATGATA  917

seq1  GAGAATATCAAAGAAAATATAAGAATCTGAAAGTATAATTTATTGATTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATCAAAGAAAATATAAGAATCTGAAAGTATAATTTATTGATTCA  967

seq1  AACACAGTGAAACACTAAAAACTACGTCCAAATTCTGCAGGTCAGTTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTGAAACACTAAAAACTACGTCCAAATTCTGCAGGTCAGTTATA  1017

seq1  TTCATATTTCCAATTTGTAAGGTATTCACATGCTGAAATTCTGGTTTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTTCCAATTTGTAAGGTATTCACATGCTGAAATTCTGGTTTTTA  1067

seq1  ATCATCCTCTTATTATTTACTTATAAAAGGATGTTTGGCTATACCTCAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTCTTATTATTTACTTATAAAAGGATGTTTGGCTATACCTCAGA  1117

seq1  TAATAATAGAATTC  1164
      ||||||||||||||
seq2  TAATAATAGAATTC  1131