BAC Information

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BAC

Clone NameB6Ng01-119F14
Chromosome1 (Build37)
Map Location 53,954,104 - 54,123,178
singlet/doubletdoublet
Overlap geneHecw2
Upstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119F14.bB6Ng01-119F14.g
ACCDH923589DH923590
length1,1761,078
definitionDH923589|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F14, 5' end.DH923590|Mus musculus domesticus DNA, BAC clone: B6Ng01-119F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,954,104 - 53,955,293)(54,122,086 - 54,123,178)
sequence
gaattcttaaattgttaccaataatcttaagccctctacagaataaagct
acaagtagagctctgtaaaccttcatgtttcacgggctaattacactgga
acaaatttgtgttcaaggaaaaaacattcattctaggtcaggtccaagga
tgaagccgcagatgggcactatgataaagaaaggccatgtgaaactgttg
atttgaacgtatgagcttatagaatgaaacagtgctttgaacttactatc
aacatccttctgtaactccccttctgtgtaatattttatctagaagataa
ttttataaagaacttttctctaagaaggtataaatggctagagagaagag
aaaaagtgtggtatttggggcttagccccatccaaaacaactccaagtca
ttcacctggctaaagagtgatccttgagccagagagaaaagagccctaac
aattatgactttattatattatttttttaattattcattttatttatatg
actacactgtagctgtctttagacacatcagaagaggtcttcagatccca
ttacagatggttgtgagccaccttatggttgctgggaattgaactcagga
cctctggaagagcagtcagtgctcttaatttcagcccaagctttttttcc
caccttaatctcctgctgctaacagtagaagttaattaccaaaagccagt
ggcctttggccttagaaaagcagagagttaaagaaataaaacacttacca
gaagtaagctactttactctgcctcccttatctccactccccaccctccc
actccccagaattgccagtgccacccatcgctgcctgtttcagttaacct
agatttggactggcacttagcatttcaatttaggcccaggtgaaataatt
tgggggaaatattgtgtgttagttaattgtgttgagagtacaaagcaatg
atgaaaagcaattctacattcacatctgaaacggaagcagaaaaaatatt
ttgctaagtataagcccattacataaggagaaattaagaaactctgcatg
catttttcgtttctatgttattttgcagcacctgtgtagctagtctgtgc
caggtgctcattaactcatggcactgacctgacagtagttaactctacca
tatctcttcatccgaaacgagacaca
gaattcacctgcccgtgcttgcacagcatttccctttcagggatgtgtgt
gtgtgtgtgtgtgtagtactttttaatatagtctggaaacatgctatcat
taaaaaatgtacagtggtctaataaatacagcaatttcctttaatttgta
cttgatgacatttgtagtattcgcccactttttctgcctctgccagactt
tatgtagctggtggatgtgcacttcatacattttctgcatattgttagta
ataggcatctcatttttatcgagaggtatatttaaatacttatttttcac
caatggtaaattaattttatgatgcttcatgaagcatttgataaaaatat
acttgtgaatgtaattggcagtaaccaatatcactagcgtactggttata
tttgatgtttggtttttttctgtttgtttgtttcctaccctgtggatcaa
gccttgggctcaaaaatgctactcaaatgctgtaccatggggccctagaa
ggctgtgtttgaaagtgctggttctgtgaatagctattcatagtgagctg
atgctactctccctcacgagttgtttcattggagggctgtattctaacct
aaatggtttgggaaacagatttcttttctggctttataaaacattctagc
cacattgtattaggcaaaaatcctacactccaacccacattttctggtgg
tgtgccattttctaaatatgtcctgtctgttccaaaatgagtatcaatag
ctggaagcagattttgttaagcaggagaatgttaattttgcacttgcagt
agagagtggcactcagttcctagactatatcctgtctctgcattgagttt
tcaaaggatttattttttatttttctcttcttattcatttattggttgtt
tgacatgctgtagcccagactgtcttaaaatcttttttttttcagacagg
gtttcttgtgtagccctgctgtctgagctcacttctgtagacaggctgct
caaactcagaattcactgccctggcttccaagtggctgggataaagatgt
gcacaccctgcctgtctgttctttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53954104_53955293
seq2: B6Ng01-119F14.b_46_1221

seq1  GAATTCTTAAATTGTTACCAATAATCTTAAGCCCTCTACAGAATAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTGTTACCAATAATCTTAAGCCCTCTACAGAATAAAGCT  50

seq1  ACAAGTAGAGCTCTGTAAACCTTCATGTTTCACGGGCTAATTACACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGAGCTCTGTAAACCTTCATGTTTCACGGGCTAATTACACTGGA  100

seq1  ACAAATTTGTGTTCAAGGAAAAAACATTCATTCTAGGTCAGGTCCAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGTGTTCAAGGAAAAAACATTCATTCTAGGTCAGGTCCAAGGA  150

seq1  TGAAGCCGCAGATGGGCACTATGATAAAGAAAGGCCATGTGAAACTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCGCAGATGGGCACTATGATAAAGAAAGGCCATGTGAAACTGTTG  200

seq1  ATTTGAACGTATGAGCTTATAGAATGAAACAGTGCTTTGAACTTACTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACGTATGAGCTTATAGAATGAAACAGTGCTTTGAACTTACTATC  250

seq1  AACATCCTTCTGTAACTCCCCTTCTGTGTAATATTTTATCTAGAAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTCTGTAACTCCCCTTCTGTGTAATATTTTATCTAGAAGATAA  300

seq1  TTTTATAAAGAACTTTTCTCTAAGAAGGTATAAATGGCTAGAGAGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAGAACTTTTCTCTAAGAAGGTATAAATGGCTAGAGAGAAGAG  350

seq1  AAAAAGTGTGGTATTTGGGGCTTAGCCCCATCCAAAACAACTCCAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTGGTATTTGGGGCTTAGCCCCATCCAAAACAACTCCAAGTCA  400

seq1  TTCACCTGGCTAAAGAGTGATCCTTGAGCCAGAGAGAAAAGAGCCCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGGCTAAAGAGTGATCCTTGAGCCAGAGAGAAAAGAGCCCTAAC  450

seq1  AATTATGACTTTATTATATTATTTTTTTAATTATTCATTTTATTTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGACTTTATTATATTATTTTTTTAATTATTCATTTTATTTATATG  500

seq1  ACTACACTGTAGCTGTCTTTAGACACATCAGAAGAGGTCTTCAGATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTGTAGCTGTCTTTAGACACATCAGAAGAGGTCTTCAGATCCCA  550

seq1  TTACAGATGGTTGTGAGCCACCTTATGGTTGCTGGGAATTGAACTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTTGTGAGCCACCTTATGGTTGCTGGGAATTGAACTCAGGA  600

seq1  CCTCTGGAAGAGCAGTCAGTGCTCTTAATTTCAGCCCAAGCTTTTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAAGAGCAGTCAGTGCTCTTAATTTCAGCCCAAGCTTTTTTTCC  650

seq1  CACCTTAATCTCCTGCTGCTAACAGTAGAAGTTAATTACCAAAAGCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAATCTCCTGCTGCTAACAGTAGAAGTTAATTACCAAAAGCCAGT  700

seq1  GGCCTTTGGCCTTAGAAAAGCAGAGAGTTAAAGAAATAAAACACTTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGGCCTTAGAAAAGCAGAGAGTTAAAGAAATAAAACACTTACCA  750

seq1  GAAGTAAGCTACTTTACTCTGCCTCCCTTATCTCCACTCCCCACCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCTACTTTACTCTGCCTCCCTTATCTCCACTCCCCACCCTCCC  800

seq1  ACTCCCCAGAATTGCCAGTGCCACCCATCGCTGCCTGTTTCAGTTAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAGAATTGCCAGTGCCACCCATCGCTGCCTGTTTCAGTTAACCT  850

seq1  AGATTTGGACTGGCACTTAGCATTTCAATTTAGGCCCAGGTGAAATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGACTGGCACTTAGCATTTCAATTTAGGCCCAGGTGAAATAATT  900

seq1  TGGGGGAAATATTGTGTGTTAGTTAATTGTGTTTGAGAGTACAAAGCAAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGGGGAAATATTGTGTGTTAGTTAATTGTG-TTGAGAGTACAAAGCAAT  949

seq1  GATGAAAAAGCAATTCTACATTCAACATCTGAAACGGAAGCAGAAAAATA  1000
      |||| |||||||||||||||||| ||||||||||||||||||||||||  
seq2  GATG-AAAAGCAATTCTACATTC-ACATCTGAAACGGAAGCAGAAAAAAT  997

seq1  TTTTTGCTAAGTATTAAGCCCATTACATAAAGGAGAAA-TAAGAAACTCT  1049
       |||||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  ATTTTGCTAAGTA-TAAGCCCATTACAT-AAGGAGAAATTAAGAAACTCT  1045

seq1  GCATGCATTTTTCGTTTCTATGTTATTTTGCAGCACCCTGTGTTAGCCTT  1099
      ||||||||||||||||||||||||||||||||||| |||||| ||||  |
seq2  GCATGCATTTTTCGTTTCTATGTTATTTTGCAGCA-CCTGTG-TAGC--T  1091

seq1  AGCCCTGTGCAAGTGGCTCATTAACTTCATGGCACTGACACTGACAGTAA  1149
      ||  |||||| ||  |||||||||| ||||||||||||| |||||||| |
seq2  AG-TCTGTGCCAGGTGCTCATTAAC-TCATGGCACTGAC-CTGACAGT-A  1137

seq1  GTTAAAATCTACCCATTATCTCTTCAT-CGGAACCAGACACA  1190
      ||| || ||||||   ||||||||||| || ||| |||||||
seq2  GTT-AACTCTACC--ATATCTCTTCATCCGAAACGAGACACA  1176

seq1: chr1_54122086_54123178
seq2: B6Ng01-119F14.g_68_1145 (reverse)

seq1  ATTTAAAGACACGACAGGCAGTGGTGGTGCACATCTTTAATCCCAGCACT  50
      |||||||||   ||||||||| ||| |||||||||||| ||||||||   
seq2  ATTTAAAGAACAGACAGGCAG-GGT-GTGCACATCTTT-ATCCCAGCCAC  47

seq1  TTGGAAGCCGGGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTTGTCTAC  100
      ||||||||| ||||||   || |||||||||||||  ||||| |||||||
seq2  TTGGAAGCCAGGGCAG--TGAATTCTGAGTTTGAG--CAGCC-TGTCTAC  92

seq1  AG-AGTGAGCTCCAAGACAGCCAGGGCTACACAAAGAAACCCTGTCTTGA  149
      || |||||||||  |||||| ||||||||||| ||||||||||||||   
seq2  AGAAGTGAGCTC--AGACAG-CAGGGCTACAC-AAGAAACCCTGTCT--G  136

seq1  AAAAAAAAAAGATTTTAAAGACAGTCTGGGCTACAGCATGTCAAACAACC  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGATTTT-AAGACAGTCTGGGCTACAGCATGTCAAACAACC  185

seq1  AATAAATGAATAAGAAGAGAAAAATAAAAAAATAAATCCTTTGAAAACTC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATAAATGAATAAGAAGAGAAAAAT-AAAAAATAAATCCTTTGAAAACTC  234

seq1  AATGCAGGGACAGGATATAGTCTAGGAACTGAGTGCCACTCTCTACTGCA  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGACAGGATATAGTCTAGGAACTGAGTGCCACTCTCTACTGCA  284

seq1  AGTGCAAAATTAACATTCTCCTGCTTAACAAAATCTGCTTCCAGCTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAAATTAACATTCTCCTGCTTAACAAAATCTGCTTCCAGCTATTG  334

seq1  ATACTCATTTTGGAACAGACAGGACATATTTAGAAAATGGCACACCACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATTTTGGAACAGACAGGACATATTTAGAAAATGGCACACCACCA  384

seq1  GAAAATGTGGGTTGGAGTGTAGGATTTTTGCCTAATACAATGTGGCTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGGGTTGGAGTGTAGGATTTTTGCCTAATACAATGTGGCTAGA  434

seq1  ATGTTTTATAAAGCCAGAAAAGAAATCTGTTTCCCAAACCATTTAGGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTATAAAGCCAGAAAAGAAATCTGTTTCCCAAACCATTTAGGTTA  484

seq1  GAATACAGCCCTCCAATGAAACAACTCGTGAGGGAGAGTAGCATCAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGCCCTCCAATGAAACAACTCGTGAGGGAGAGTAGCATCAGCTC  534

seq1  ACTATGAATAGCTATTCACAGAACCAGCACTTTCAAACACAGCCTTCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAATAGCTATTCACAGAACCAGCACTTTCAAACACAGCCTTCTAG  584

seq1  GGCCCCATGGTACAGCATTTGAGTAGCATTTTTGAGCCCAAGGCTTGATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATGGTACAGCATTTGAGTAGCATTTTTGAGCCCAAGGCTTGATC  634

seq1  CACAGGGTAGGAAACAAACAAACAGAAAAAAACCAAACATCAAATATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTAGGAAACAAACAAACAGAAAAAAACCAAACATCAAATATAAC  684

seq1  CAGTACGCTAGTGATATTGGTTACTGCCAATTACATTCACAAGTATATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACGCTAGTGATATTGGTTACTGCCAATTACATTCACAAGTATATTT  734

seq1  TTATCAAATGCTTCATGAAGCATCATAAAATTAATTTACCATTGGTGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATGCTTCATGAAGCATCATAAAATTAATTTACCATTGGTGAAA  784

seq1  AATAAGTATTTAAATATACCTCTCGATAAAAATGAGATGCCTATTACTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATTTAAATATACCTCTCGATAAAAATGAGATGCCTATTACTAA  834

seq1  CAATATGCAGAAAATGTATGAAGTGCACATCCACCAGCTACATAAAGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGCAGAAAATGTATGAAGTGCACATCCACCAGCTACATAAAGTCT  884

seq1  GGCAGAGGCAGAAAAAGTGGGCGAATACTACAAATGTCATCAAGTACAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGAAAAAGTGGGCGAATACTACAAATGTCATCAAGTACAAA  934

seq1  TTAAAGGAAATTGCTGTATTTATTAGACCACTGTACATTTTTTAATGATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAATTGCTGTATTTATTAGACCACTGTACATTTTTTAATGATA  984

seq1  GCATGTTTCCAGACTATATTAAAAAGTACTACACACACACACACACACAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCCAGACTATATTAAAAAGTACTACACACACACACACACACAC  1034

seq1  ATCCCTGAAAGGGAAATGCTGTGCAAGCACGGGCAGGTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAAAGGGAAATGCTGTGCAAGCACGGGCAGGTGAATTC  1078