BAC Information

Click to search

BAC

Clone NameB6Ng01-119N01
Chromosome1 (Build37)6 (Build37)
Map Location 123,715,272 - 123,716,37411,539,886 - 11,539,977
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N01.bB6Ng01-119N01.g
ACCDH923928DH923929
length1,097105
definitionDH923928|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N01, 5' end.DH923929|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,715,272 - 123,716,374)(11,539,886 - 11,539,977)
sequence
gaattcattatgatatgtatgttcaaactgtactacagagcaagatcgat
aaaatctgcatggtattggtacagagacagacaagtagatcgatggaata
gaattgaagacccagaaatgaacccacacatctatggtcacttgatcttt
gacaaaggagctaaaaccatccagtggaaaaaaagatagtatattcaaca
aatggtgctggtttcaagtggtggtcagcacgtcgaagaatgcaaattga
tccattcccatctccttatacaaagctcaagtgaaagtggatcaatattt
atcactaaatatcaataaatattaaggaagatggtgagttctttcgatcc
cattgcaggggaggcaggcagaggaggatcactagagtttgtgagctcca
ggttgtgacaggctacctccaaaaacaaagcagatggaatataagggaca
acttcaagcttgtcctttggtcttgaaatgtatatgtacccatataagca
caccacaccacacacacacagacttctctaaagttttgctccttgatgca
tagcacaaagagtaaacaagcccatgagctgtccctgagttctccattct
gggttcttccataagtctccactgacttagaagatgagttatccccatgc
atggaaacagaggagactgatttactcacattattgcttcttgacttgat
aacagcatcctctagattagcatgaatcaagtgatattagagtttgtgaa
atagaaagttagctacatgatgctcacccataagcttcagcagctcctaa
gatgagatactttcatagacctgagacccattgcatcctgtctggtggag
aaggcaggggagcatctgcctgtgtgctcactgatgcatgtggtggatgt
gtggctggttgtgacatgtaagtagggaaccacaggggttgcagatttca
aaactctcaaacaacattagcacagagagtgagttatacagtttgcataa
tgctgtctatataaccctgtgactagagctggtataatgcctcatctgaa
atggtgttgcctagttgcacaatggccttggcttccagccccaccac
aaatatttgcaaacttccttcctttcttccttccttccttccttccttcc
ttccttccttccttccttccttctttcctttctctctctctctctctctc
tctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123715272_123716374
seq2: B6Ng01-119N01.b_50_1146 (reverse)

seq1  GTGGTGGGGCTGGAAGCC-AGGGCATTGTGCAAACTAGGCAAACACCATC  49
      |||||||||||||||||| ||| |||||||| |||||||| |||||||| 
seq2  GTGGTGGGGCTGGAAGCCAAGGCCATTGTGC-AACTAGGC-AACACCATT  48

seq1  TCAGATGAGGCATATTACCAGCCTCCTAGTCACAGGGTTTATATAAGACA  99
      |||||||||||||  |||||||   |||||||||||| |||||| |||||
seq2  TCAGATGAGGCATTATACCAGC--TCTAGTCACAGGG-TTATAT-AGACA  94

seq1  GCATTATGCAAACTGTAT-ACTCACTTCTCTGTGCTAATGTTGTTTTGAG  148
      |||||||||||||||||| |||||| ||||||||||||||||| ||||||
seq2  GCATTATGCAAACTGTATAACTCAC-TCTCTGTGCTAATGTTG-TTTGAG  142

seq1  AGTTTTGGAATCTGCAACCCCTGTGGTTCCCTACTTACATGTCACAACCA  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAAATCTGCAACCCCTGTGGTTCCCTACTTACATGTCACAACCA  192

seq1  GCCACACATCCACCACATGCATCAGTGAGCACACAGGCAGATGCTCCCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACATCCACCACATGCATCAGTGAGCACACAGGCAGATGCTCCCCT  242

seq1  GCCTTCTCCACCAGACAGGATGCAATGGGTCTCAGGTCTATGAAAGTATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCCACCAGACAGGATGCAATGGGTCTCAGGTCTATGAAAGTATC  292

seq1  TCATCTTAGGAGCTGCTGAAGCTTATGGGTGAGCATCATGTAGCTAACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAGGAGCTGCTGAAGCTTATGGGTGAGCATCATGTAGCTAACTT  342

seq1  TCTATTTCACAAACTCTAATATCACTTGATTCATGCTAATCTAGAGGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCACAAACTCTAATATCACTTGATTCATGCTAATCTAGAGGATG  392

seq1  CTGTTATCAAGTCAAGAAGCAATAATGTGAGTAAATCAGTCTCCTCTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCAAGTCAAGAAGCAATAATGTGAGTAAATCAGTCTCCTCTGTT  442

seq1  TCCATGCATGGGGATAACTCATCTTCTAAGTCAGTGGAGACTTATGGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATGGGGATAACTCATCTTCTAAGTCAGTGGAGACTTATGGAAG  492

seq1  AACCCAGAATGGAGAACTCAGGGACAGCTCATGGGCTTGTTTACTCTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAATGGAGAACTCAGGGACAGCTCATGGGCTTGTTTACTCTTTG  542

seq1  TGCTATGCATCAAGGAGCAAAACTTTAGAGAAGTCTGTGTGTGTGTGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCATCAAGGAGCAAAACTTTAGAGAAGTCTGTGTGTGTGTGGTG  592

seq1  TGGTGTGCTTATATGGGTACATATACATTTCAAGACCAAAGGACAAGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCTTATATGGGTACATATACATTTCAAGACCAAAGGACAAGCTT  642

seq1  GAAGTTGTCCCTTATATTCCATCTGCTTTGTTTTTGGAGGTAGCCTGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTCCCTTATATTCCATCTGCTTTGTTTTTGGAGGTAGCCTGTCA  692

seq1  CAACCTGGAGCTCACAAACTCTAGTGATCCTCCTCTGCCTGCCTCCCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAGCTCACAAACTCTAGTGATCCTCCTCTGCCTGCCTCCCCTG  742

seq1  CAATGGGATCGAAAGAACTCACCATCTTCCTTAATATTTATTGATATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGATCGAAAGAACTCACCATCTTCCTTAATATTTATTGATATTTA  792

seq1  GTGATAAATATTGATCCACTTTCACTTGAGCTTTGTATAAGGAGATGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATATTGATCCACTTTCACTTGAGCTTTGTATAAGGAGATGGGA  842

seq1  ATGGATCAATTTGCATTCTTCGACGTGCTGACCACCACTTGAAACCAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAATTTGCATTCTTCGACGTGCTGACCACCACTTGAAACCAGCA  892

seq1  CCATTTGTTGAATATACTATCTTTTTTTCCACTGGATGGTTTTAGCTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTTGAATATACTATCTTTTTTTCCACTGGATGGTTTTAGCTCCT  942

seq1  TTGTCAAAGATCAAGTGACCATAGATGTGTGGGTTCATTTCTGGGTCTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGATCAAGTGACCATAGATGTGTGGGTTCATTTCTGGGTCTTC  992

seq1  AATTCTATTCCATCGATCTACTTGTCTGTCTCTGTACCAATACCATGCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTCCATCGATCTACTTGTCTGTCTCTGTACCAATACCATGCAG  1042

seq1  ATTTTATCGATCTTGCTCTGTAGTACAGTTTGAACATACATATCATAATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCGATCTTGCTCTGTAGTACAGTTTGAACATACATATCATAATG  1092

seq1  AATTC  1103
      |||||
seq2  AATTC  1097

seq1: chr6_11539886_11539977
seq2: B6Ng01-119N01.g_88_179 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGA  50
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAAAGGAAAGAAGGAAGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  92
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAG  92