BAC Information

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BAC

Clone NameB6Ng01-120C04
Chromosome1 (Build37)
Map Location 135,092,734 - 135,210,320
singlet/doubletdoublet
Overlap genePlekha6, Golt1a
Upstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneKiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120C04.bB6Ng01-120C04.g
ACCDH924159DH924160
length6511,064
definitionDH924159|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C04, 5' end.DH924160|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,092,734 - 135,093,384)(135,209,162 - 135,210,320)
sequence
gaattcagcttctacttgctccatgtagctcatttgaattaccttgagca
tccttttagatcgtacccaagacacatgctatcttctcccatccacttcc
tcccgcagttgctgctgggtccccaagtgtctctgcagtgggcttgttaa
ttggcgcttcagctggctgattgactgtaatgggggtgaacatttattta
ccccagcagccgcctctcagacagctgttaattgcaggcatgagagagac
aataattatgggataatgtgtggcttttgtgtgaggccttctctttgcac
gtgtcagcaaacactggtgggtttgttttctaacatttgacgcccctgct
gaggagatgctgtagcccctcccccaccctcatcctgcagcctcctcatg
cttgcatcccttcccttccccctgtcttgggcctggaatttaaccaggtt
ccctgggtgatagaaagtgttttcaccaggtacctctaatcccagcaatc
agaatgcagaggcaggtggatcgctgagttcaggccaacttggaactggg
ctagatccaggaaagccagggctacacaaggaaactctgctcaaaaacaa
acaaaaacctaaaacaaaacaaaatgggggtggggtgggcgtgggggtgg
g
gaattcactggcagagccgtctgcaggacattaccgtgtatacctcccgc
agtctctcggtgaacctgctgctagcctgactcccactggtgatctctct
ttgctcttcaggtgacacactgggcccatctgcatgaggtctgtatactt
caggattctctagagtcacagaacttatggaatctatatctataaaggga
atttattggagtgacttgcaggctgcagtctaactaacacaacaatgggc
agctgtgaatgggaagtctaagagtctactattggctcagtcccacgagg
ctaggtgcttcagctggtcttctgtataagctgggatcttggagaagtag
gttcccacagatgtgctggcagtaagtgcaagcaggcgaagaatgaacac
gcccttccttcttccattgtcctcatgtaggtctccagcagaaggtatgg
cccagattaaaggtgtgcctcaagatatggactaaaggtgtgtcctccag
tctcaagatctggatcacaggtgtgcccctccatttctggattataggtc
attccagatatagtcaagttgactactgagaatggccatcacaaagaccc
tacctctactccataggaaggccctccatgccccatcttggctacccatg
gaacactgcccacagcctggggctctgacaccctgctctgagtacccctt
cgtgtttcctcgaatgactttctgactgactgttccagacgaaggagagt
tgacagtagtgacagacagttgatggccctgcaacaccaggcagagttca
cactgcctgctgaggggctgtgattaactccactttacaaacacaactaa
accctccctgatgaggtatgatggctacccgggtcttaaatacagtgaga
ccctgaaatgtaacttaactacccagtcgtttcactctgcagaagtgttc
tgtttgacatatacccaaagctcagtggtgtcagccctgcagtgggcagc
agcactgctgtgagcttctcttgctctcagatgctttatgatttctctgc
agctagctgtacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135092734_135093384
seq2: B6Ng01-120C04.b_46_696

seq1  GAATTCAGCTTCTACTTGCTCCATGTAGCTCATTTGAATTACCTTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTACTTGCTCCATGTAGCTCATTTGAATTACCTTGAGCA  50

seq1  TCCTTTTAGATCGTACCCAAGACACATGCTATCTTCTCCCATCCACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGATCGTACCCAAGACACATGCTATCTTCTCCCATCCACTTCC  100

seq1  TCCCGCAGTTGCTGCTGGGTCCCCAAGTGTCTCTGCAGTGGGCTTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCAGTTGCTGCTGGGTCCCCAAGTGTCTCTGCAGTGGGCTTGTTAA  150

seq1  TTGGCGCTTCAGCTGGCTGATTGACTGTAATGGGGGTGAACATTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCTTCAGCTGGCTGATTGACTGTAATGGGGGTGAACATTTATTTA  200

seq1  CCCCAGCAGCCGCCTCTCAGACAGCTGTTAATTGCAGGCATGAGAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCAGCCGCCTCTCAGACAGCTGTTAATTGCAGGCATGAGAGAGAC  250

seq1  AATAATTATGGGATAATGTGTGGCTTTTGTGTGAGGCCTTCTCTTTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATGGGATAATGTGTGGCTTTTGTGTGAGGCCTTCTCTTTGCAC  300

seq1  GTGTCAGCAAACACTGGTGGGTTTGTTTTCTAACATTTGACGCCCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCAAACACTGGTGGGTTTGTTTTCTAACATTTGACGCCCCTGCT  350

seq1  GAGGAGATGCTGTAGCCCCTCCCCCACCCTCATCCTGCAGCCTCCTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGCTGTAGCCCCTCCCCCACCCTCATCCTGCAGCCTCCTCATG  400

seq1  CTTGCATCCCTTCCCTTCCCCCTGTCTTGGGCCTGGAATTTAACCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATCCCTTCCCTTCCCCCTGTCTTGGGCCTGGAATTTAACCAGGTT  450

seq1  CCCTGGGTGATAGAAAGTGTTTTCACCAGGTACCTCTAATCCCAGCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTGATAGAAAGTGTTTTCACCAGGTACCTCTAATCCCAGCAATC  500

seq1  AGAATGCAGAGGCAGGTGGATCGCTGAGTTCAGGCCAACTTGGAACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGAGGCAGGTGGATCGCTGAGTTCAGGCCAACTTGGAACTGGG  550

seq1  CTAGATCCAGGAAAGCCAGGGCTACACAAGGAAACTCTGCTCAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCAGGAAAGCCAGGGCTACACAAGGAAACTCTGCTCAAAAACAA  600

seq1  ACAAAAACCTAAAACAAAACAAAATGGGGGTGGGGTGGGCGTGGGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCTAAAACAAAACAAAATGGGGGTGGGGTGGGCGTGGGGGTGG  650

seq1  G  651
      |
seq2  G  651

seq1: chr1_135209162_135210320
seq2: B6Ng01-120C04.g_66_1129 (reverse)

seq1  AGGTACAGCTAGCCGGTGGGGTGGGGTGGGGGAGTACAGGTAGACGGTCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTGGAGGTAGGGTTACAGCTAGCTGGCAGGAAGAAAATCATAAAGCA  100
                 |||  ||||||||||| ||||  || |||||||||||||
seq2  -----------AGG--TACAGCTAGCT-GCAG--AG-AAATCATAAAGCA  33

seq1  TCCTGAGAGCCAAGAGGAAAGCTTCCAACCAGGCAGTGGCCTGCTGCCCA  150
      | ||||||| ||||||  |||||  ||     ||||||  ||||||||||
seq2  T-CTGAGAG-CAAGAG--AAGCTCACA-----GCAGTG--CTGCTGCCCA  72

seq1  CTGCCAAGGGCTGACACCCACTTGGAGCTTTGGGT-TATTAATGGTCAAA  199
      ||||  |||||||||| |||||  ||||||||||| |||     ||||||
seq2  CTGC--AGGGCTGACA-CCACT--GAGCTTTGGGTATAT-----GTCAAA  112

seq1  ACAAGAACACTTTCTGCAGGAGTGGAAACGACTGGGTAGGTTAAGGTTAC  249
         ||||||| ||||||| |||| |||||||||||||| ||||| |||||
seq2  --CAGAACAC-TTCTGCA-GAGT-GAAACGACTGGGTA-GTTAA-GTTAC  155

seq1  ATTTCAGGGTCTCAACTGTATTTAAGACCCGGGTAGCCATCATACCTCAT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGTCTC-ACTGTATTTAAGACCCGGGTAGCCATCATACCTCAT  204

seq1  CAGGGAGGGTTTAGTTGTGTTTGTAAAGTGGAGTTAATCACAGCCCCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGTTTAGTTGTGTTTGTAAAGTGGAGTTAATCACAGCCCCTCA  254

seq1  GCAGGCAGTGTGAACTCTGCCTGGTGTTGCAGGGCCATCAACTGTCTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTGTGAACTCTGCCTGGTGTTGCAGGGCCATCAACTGTCTGTC  304

seq1  ACTACTGTCAACTCTCCTTCGTCTGGAACAGTCAGTCAGAAAGTCATTCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTCAACTCTCCTTCGTCTGGAACAGTCAGTCAGAAAGTCATTCG  354

seq1  AGGAAACACGAAGGGGTACTCAGAGCAGGGTGTCAGAGCCCCAGGCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACGAAGGGGTACTCAGAGCAGGGTGTCAGAGCCCCAGGCTGTG  404

seq1  GGCAGTGTTCCATGGGTAGCCAAGATGGGGCATGGAGGGCCTTCCTATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTCCATGGGTAGCCAAGATGGGGCATGGAGGGCCTTCCTATGG  454

seq1  AGTAGAGGTAGGGTCTTTGTGATGGCCATTCTCAGTAGTCAACTTGACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGTAGGGTCTTTGTGATGGCCATTCTCAGTAGTCAACTTGACTA  504

seq1  TATCTGGAATGACCTATAATCCAGAAATGGAGGGGCACACCTGTGATCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGAATGACCTATAATCCAGAAATGGAGGGGCACACCTGTGATCCA  554

seq1  GATCTTGAGACTGGAGGACACACCTTTAGTCCATATCTTGAGGCACACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGACTGGAGGACACACCTTTAGTCCATATCTTGAGGCACACCT  604

seq1  TTAATCTGGGCCATACCTTCTGCTGGAGACCTACATGAGGACAATGGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGGGCCATACCTTCTGCTGGAGACCTACATGAGGACAATGGAAG  654

seq1  AAGGAAGGGCGTGTTCATTCTTCGCCTGCTTGCACTTACTGCCAGCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCGTGTTCATTCTTCGCCTGCTTGCACTTACTGCCAGCACAT  704

seq1  CTGTGGGAACCTACTTCTCCAAGATCCCAGCTTATACAGAAGACCAGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAACCTACTTCTCCAAGATCCCAGCTTATACAGAAGACCAGCTG  754

seq1  AAGCACCTAGCCTCGTGGGACTGAGCCAATAGTAGACTCTTAGACTTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTAGCCTCGTGGGACTGAGCCAATAGTAGACTCTTAGACTTCCC  804

seq1  ATTCACAGCTGCCCATTGTTGTGTTAGTTAGACTGCAGCCTGCAAGTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCTGCCCATTGTTGTGTTAGTTAGACTGCAGCCTGCAAGTCAC  854

seq1  TCCAATAAATTCCCTTTATAGATATAGATTCCATAAGTTCTGTGACTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAATTCCCTTTATAGATATAGATTCCATAAGTTCTGTGACTCTA  904

seq1  GAGAATCCTGAAGTATACAGACCTCATGCAGATGGGCCCAGTGTGTCACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTGAAGTATACAGACCTCATGCAGATGGGCCCAGTGTGTCACC  954

seq1  TGAAGAGCAAAGAGAGATCACCAGTGGGAGTCAGGCTAGCAGCAGGTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCAAAGAGAGATCACCAGTGGGAGTCAGGCTAGCAGCAGGTTCA  1004

seq1  CCGAGAGACTGCGGGAGGTATACACGGTAATGTCCTGCAGACGGCTCTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGACTGCGGGAGGTATACACGGTAATGTCCTGCAGACGGCTCTGC  1054

seq1  CAGTGAATTC  1159
      ||||||||||
seq2  CAGTGAATTC  1064