BAC Information

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BAC

Clone NameB6Ng01-120J11
Chromosome1 (Build37)14 (Build37)
Map Location 37,531,399 - 37,532,51895,939,731 - 95,940,083
singlet/doubletsingletsinglet
Overlap geneMgat4a
Upstream geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50
Downstream gene2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120J11.bB6Ng01-120J11.g
ACCDH924497DH924498
length1,094446
definitionDH924497|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J11, 5' end.DH924498|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,531,399 - 37,532,518)(95,939,731 - 95,940,083)
sequence
gaattccaggaaggtaatttgtacctgacaatcagcaggaccaagaggac
agacagcatgttcaaaaatggggttgaaagcttatgaaaacaaaacaaaa
aaaacaaaaacaaaaaacaaaacaaaacaaaaaaccttgttttctgctct
gagacaaagagtactactgcccacataaatacttcactttttaaacttca
agcaaaggcaaacacataccacagtatttctgtgagctttactagtttct
aaaacggtcgtgtgctgtaatatagtgagtcagaaagaggaagttaaaag
gctaaaaaaattaaaaaaaaaaaaaaaaggcgactacttcttcttcattt
gaatgatctgtcctagcttttctgtctcctctcatctgcagatgacagca
gacattcccacacaggccccagcactctttcagttcaaatcacttcataa
actcacctcttcaggaacctagtgggatagcctagtccagaacttgcctg
gatcatgacaacagtccctatccttaataaagccgccagtgggtgccttt
caaatggcaggccttgacacctcagcaaggtctgtgactaaggtgcaatt
gtgagacattcaagcggagatgctatcgcacaggtgaccaggactcataa
gactgtacagattcctaaggagctgccacggtgagaagaaactgtggatt
caggatgactggatgcaacctgggatgccgaaacagagtgaccatagcag
taacagcaaggaattcaaatgaggtctacagttaaagagtactggtgccc
atgaggagactgggtatggcaagcctctaatcccagcagggaggcagagg
taggtggatctctgtagctcaaggccaacagcccacataataagcctcat
caaaaaaaaaaaaaaaggagtattgagctcccaggatgactcagtgggta
aggcactccagcaagaacaagtatttggttgtgttctgacttctgtgtga
ccagaacataccactcacacatacacatcatctactatcactacctgcta
acatcagtgctgatacatacaaccgctctaccacataaacactg
atcccatatacagacactattgtggatgccaacaagagcttgctgacagg
agcctgatatagctgtctcctaagaggctctgccagaaccttacaaatac
agaggcagatgcttgcagccaaccattggactgagcacagagtccccagt
gaaggagttggagaaaggactgaagaagctgaagtggtttgtaaccccat
aggaagaacaacaatatcaaccaaccagatcccacagagctcccagggac
taagcaatcaaccaaggagtacacatggctccagctgcatatgtagcaga
ggatggccttgtcaggcatcaatggaaggagaggtccttggtcctatgaa
ggcttgagagatgccccagtgaggggaatcaagaacaaggaggtgggtgg
aggaacaccctcatagaagcagggggatggaggatggaataggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37531399_37532518
seq2: B6Ng01-120J11.b_48_1141

seq1  GAATTCCAGGAAGGTAATTTGTACCTGACAATCAGCAGGACCAAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGGTAATTTGTACCTGACAATCAGCAGGACCAAGAGGAC  50

seq1  AGACAGCATGTTCAAAAATGGGGTTGAAAGCTTATGAAAACAAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATGTTCAAAAATGGGGTTGAAAGCTTATGAAAACAAAACAAAA  100

seq1  AAAACAAAAACAAAAAACAAAACAAAACAAAAAACCTTGTTTTCTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAAACAAAACAAAACAAAAAACCTTGTTTTCTGCTCT  150

seq1  GAGACAAAGAGTACTACTGCCCACATAAATACTTCACTTTTTAAACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGAGTACTACTGCCCACATAAATACTTCACTTTTTAAACTTCA  200

seq1  AGCAAAGGCAAACACATACCACAGTATTTCTGTGAGCTTTACTAGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGCAAACACATACCACAGTATTTCTGTGAGCTTTACTAGTTTCT  250

seq1  AAAACGGTCGTGTGCTGTAATATAGTGAGTCAGAAAGAGGAAGTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGTCGTGTGCTGTAATATAGTGAGTCAGAAAGAGGAAGTTAAAAG  300

seq1  GCTAAAAAAATTAAAAAAAAAAAAAAAAGGCGACTACTTCTTCTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAAATTAAAAAAAAAAAAAAAAGGCGACTACTTCTTCTTCATTT  350

seq1  GAATGATCTGTCCTAGCTTTTCTGTCTCCTCTCATCTGCAGATGACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCTGTCCTAGCTTTTCTGTCTCCTCTCATCTGCAGATGACAGCA  400

seq1  GACATTCCCACACAGGCCCCAGCACTCTTTCAGTTCAAATCACTTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCCACACAGGCCCCAGCACTCTTTCAGTTCAAATCACTTCATAA  450

seq1  ACTCACCTCTTCAGGAACCTAGTGGGATAGCCTAGTCCAGAACTTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTCTTCAGGAACCTAGTGGGATAGCCTAGTCCAGAACTTGCCTG  500

seq1  GATCATGACAACAGTCCCTATCCTTAATAAAGCCGCCAGTGGGTGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGACAACAGTCCCTATCCTTAATAAAGCCGCCAGTGGGTGCCTTT  550

seq1  CAAATGGCAGGCCTTGACACCTCAGCAAGGTCTGTGACTAAGGTGCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCAGGCCTTGACACCTCAGCAAGGTCTGTGACTAAGGTGCAATT  600

seq1  GTGAGACATTCAAGCGGAGATGCTATCGCACAGGTGACCAGGACTCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACATTCAAGCGGAGATGCTATCGCACAGGTGACCAGGACTCATAA  650

seq1  GACTGTACAGATTCCTAAGGAGCTGCCACGGTGAGAAGAAACTGTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACAGATTCCTAAGGAGCTGCCACGGTGAGAAGAAACTGTGGATT  700

seq1  CAGGATGACTGGATGCAACCTGGGATGCCGAAACAGAGTGACCATAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGACTGGATGCAACCTGGGATGCCGAAACAGAGTGACCATAGCAG  750

seq1  TAACAGCAAGGAATTCAAATGAGGTCTACAGTTAAAGAGTACTGGTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAAGGAATTCAAATGAGGTCTACAGTTAAAGAGTACTGGTGCCC  800

seq1  ATGAGGAGACTGGGTATGGCAAGCCTCTAATCCCAGCAGGGAGGCAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGACTGGGTATGGCAAGCCTCTAATCCCAGCAGGGAGGCAGAGG  850

seq1  TAGGTGGATCTCTGTTAGCTCAAGGCCAACAGGCCCACATAATAAGGCCT  900
      |||||||||||||| |||||||||||||||| ||||||||||||| ||||
seq2  TAGGTGGATCTCTG-TAGCTCAAGGCCAACA-GCCCACATAATAA-GCCT  897

seq1  CATCAAAAAAAAAAAAAAAAAAAAAAAAGAGTATTGAGCTCCCAGGATGA  950
      ||||        ||||||||||||||| ||||||||||||||||||||||
seq2  CATC--------AAAAAAAAAAAAAAAGGAGTATTGAGCTCCCAGGATGA  939

seq1  CTCAGTGGGTAAAGGCACCCCAGCAAGGAACAAAGTATTTGGCTGTGCTC  1000
      |||||||||| ||||||| ||||||| |||| |||||||||| |||| ||
seq2  CTCAGTGGGT-AAGGCACTCCAGCAA-GAAC-AAGTATTTGGTTGTGTTC  986

seq1  TGACCTCTGTGTGACACAGAACATACACACACACACATACACACACACAC  1050
      |||| |||||||||| |||||||||| ||| ||||||||||||    || 
seq2  TGACTTCTGTGTGAC-CAGAACATAC-CACTCACACATACACA---TCAT  1031

seq1  ACACACACACACACACGCACACACACAGCTGCTGATACATACAACACGCT  1100
        ||   |||  ||  ||  |||  ||| |||||||||||||||| ||||
seq2  CTACTATCAC-TACCTGCTAACA-TCAG-TGCTGATACATACAAC-CGCT  1077

seq1  CACACACAACATAAACACTG  1120
      |    || ||||||||||||
seq2  C---TACCACATAAACACTG  1094

seq1: chr14_95939731_95940083
seq2: B6Ng01-120J11.g_348_520 (reverse)

seq1  CCCCCTACCCTGCTTCTATGAGGGTGCTCCTCTAACACAGCCACTCTCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTCACTCCCTTCCTCTACCCTGCTTCTATGAGGGTGCTCCCCTAACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCCACCCTCTTCTCCTCACTCCCTTCCCCTACCCTGCTTCTATGAGGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTCCCCTAACACAGCCACCCTCTCCTCCTCACTCCCTTCCCCTACCCT  200
                         ||| ||  |||   |||| | |     ||||
seq2  -------------------CCCCCTATTCCATCCTCCATCC-----CCCT  26

seq1  GCTTCTATGAGGGTGCTCCCCTAACACAGCCACCCTCTCCTCCTCACTCC  250
      ||||||||||||||| ||| |     || ||||   |||||  |  ||  
seq2  GCTTCTATGAGGGTGTTCCTC-----CACCCAC---CTCCTTGT-TCTTG  67

seq1  CTTCCCCTACCCTGTGGCA-----CAGAGCCTTCACATTATCAAGGGCCT  295
       ||||||| | ||| ||||     || |||||||| |  | ||||| |||
seq2  ATTCCCCT-CACTGGGGCATCTCTCA-AGCCTTCATAGGACCAAGGACCT  115

seq1  CTCCTCCCAGTGATGCCAGATAAGGTGATCCTCTGCTCCATATGCAGCTG  345
      ||||| ||| ||||||| || ||||  |||||||||| ||||||||||||
seq2  CTCCTTCCATTGATGCCTGACAAGGCCATCCTCTGCTACATATGCAGCTG  165

seq1  GAGCCATG  353
      ||||||||
seq2  GAGCCATG  173