BAC Information

Click to search

BAC

Clone NameB6Ng01-120N10
Chromosome1 (Build37)
Map Location 64,867,328 - 65,018,948
singlet/doubletdoublet
Overlap gene9430067K14Rik, LOC667245
Upstream geneLOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5
Downstream geneLOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N10.bB6Ng01-120N10.g
ACCDH924676DH924677
length8451,140
definitionDH924676|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N10, 5' end.DH924677|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,018,112 - 65,018,948)(64,867,328 - 64,868,477)
sequence
gaattccctgccttggagctttgtggacatgttctaagtgccttttcttt
cagggcttgtcttcctgggggctgactagatgtcagtttgtccccattgt
ggtttgaatgtgtctccccagaagctaacaggttggaaacttaattcaca
aatttatatgttgataatattggtaggagagcctcttgggaggtagtgag
ggtgaggcaggatcatattgatggttttataagaaagagaggcccaaact
aggaagattgctctctccccatgagtcatcctccttcctattacaatgta
ggaagaaggctggacctggatgccaagacctccagaatctggagcaaaac
aaacagctaaaagaaacttctcatcttatcagttatccggcctctggtat
tttgttacatcaccagaaaactgtaataggaaagtcctctaaggcctgag
gagtggatgcagctggagatgcagtagagaggttagcatctggtagctaa
ggtattaacagatatcctgttgacagggcctaggcagggaaactgagctc
acctgtctgttttcgcatattttgactgctatggagaaccatcctggtga
gatgaacttctcactatctttcaaaaaggtttttgagctgggcatggtgg
cgcacactttttaatcccagcacttgggaggcagaggcaggcggatttct
gagttcgaaggctagcctggtctacaaagtgagtttcaggacaagccagg
gctatacagagaaaaccctagtctcgaaataatcaataaaaaaaaaaaaa
aaaaataaataaaaggtttttgggcaaattagttctgaagcacat
gaattccagcatggtgatgagcctcactcactgtgtgctcctcacaaggc
atgggccatccacgagactgctgatcccagcacgagccacggatctgcct
ctaatgcccccccctgcccccctcccgtcaccgtatgtgctggcctgcaa
atattgatgagtttggaactcatggcagtcacttattaactacattacta
atgcacttaactactgctcatgggcttcaaagacttcagcacctcacaca
gcaataacagtgagtctgccttttatttctgtaccgttaatgtctgctta
tatgggctgactttgatatcaggaaaaaaggtgaaattaacttagggact
gccataaataacaatagctacctgggtaccccccctttttttttcaaata
agtgcctagtttaaaatgacaattttacctccaactaacacctaacagag
acacagtaagacttcgagaaaagtaatctgtcctttattgaaaaaaaatg
aggctacactagagatggaagtggagaagcattttaagccttaggaacaa
gaccatgatgctaacaacttcagcaactgttaacttgggcgggaggaaca
agtcagatagatcagctgctgctctgtattactgtgggtctttgactttg
atagtagggaatgtatattattttgcactgaaatacaaaaagtgaatata
aaatcaagtttactgcttttcagagatagatcttttcctaacagggaggt
agagattacagtggctgttttctgagctaggccagcatgcagtcacatca
cttccctccataacctacagaaagctgtaggtacactagacctgtttcag
ttctgttctctcagggaccgttacctccaacaccccaggaaggcacgcac
ctaacaccaacatctgatacacgctgtctaggaatatccaaccaccaagc
tcttctacactgtgatagcaattctctgagtttgctccttttctcttact
aatcagtcacgactaatgactcattaagaacggctgaggatttagatggt
ctgaaaaccaggtgagtcaagtgtattgacagacttggatctaaggagta
tgagcactcttgacctagtttttctctatctagaatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65018112_65018948
seq2: B6Ng01-120N10.b_47_891 (reverse)

seq1  ATGTGC-TCAGAACTAATTTG-CCAAAAACCTTTT-TTTTTTTTTTTTTT  47
      |||||| |||||||||||||| ||||||||||||| ||| ||||||||||
seq2  ATGTGCTTCAGAACTAATTTGCCCAAAAACCTTTTATTTATTTTTTTTTT  50

seq1  TTTTTTTTTTTGGTT-TTTCGAGAC-AGGG-TTTCTCTGTATAGCCCTGG  94
      |||||||| ||| || ||||||||| |||| |||||||||||||||||||
seq2  TTTTTTTTATTGATTATTTCGAGACTAGGGTTTTCTCTGTATAGCCCTGG  100

seq1  C-TGTCCTGGAACTCACTTTGTAGACCAGGCTAGCC-TCGAACTCAGAAA  142
      | ||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  CTTGTCCTGAAACTCACTTTGTAGACCAGGCTAGCCTTCGAACTCAGAAA  150

seq1  TCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAAGTGTGCGCCACC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAAGTGTGCGCCACC  200

seq1  ATGCCCAGCTCAAAAACCTTTTTGAAAGATAGTGAGAAGTTCATCTCACC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCTCAAAAACCTTTTTGAAAGATAGTGAGAAGTTCATCTCACC  250

seq1  AGGATGGTTCTCCATAGCAGTCAAAATATGCGAAAACAGACAGGTGAGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTTCTCCATAGCAGTCAAAATATGCGAAAACAGACAGGTGAGCT  300

seq1  CAGTTTCCCTGCCTAGGCCCTGTCAACAGGATATCTGTTAATACCTTAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCCTGCCTAGGCCCTGTCAACAGGATATCTGTTAATACCTTAGC  350

seq1  TACCAGATGCTAACCTCTCTACTGCATCTCCAGCTGCATCCACTCCTCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATGCTAACCTCTCTACTGCATCTCCAGCTGCATCCACTCCTCAG  400

seq1  GCCTTAGAGGACTTTCCTATTACAGTTTTCTGGTGATGTAACAAAATACC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAGGACTTTCCTATTACAGTTTTCTGGTGATGTAACAAAATACC  450

seq1  AGAGGCCGGATAACTGATAAGATGAGAAGTTTCTTTTAGCTGTTTGTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGGATAACTGATAAGATGAGAAGTTTCTTTTAGCTGTTTGTTTT  500

seq1  GCTCCAGATTCTGGAGGTCTTGGCATCCAGGTCCAGCCTTCTTCCTACAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGATTCTGGAGGTCTTGGCATCCAGGTCCAGCCTTCTTCCTACAT  550

seq1  TGTAATAGGAAGGAGGATGACTCATGGGGAGAGAGCAATCTTCCTAGTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGGAAGGAGGATGACTCATGGGGAGAGAGCAATCTTCCTAGTTT  600

seq1  GGGCCTCTCTTTCTTATAAAACCATCAATATGATCCTGCCTCACCCTCAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTCTTTCTTATAAAACCATCAATATGATCCTGCCTCACCCTCAC  650

seq1  TACCTCCCAAGAGGCTCTCCTACCAATATTATCAACATATAAATTTGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCAAGAGGCTCTCCTACCAATATTATCAACATATAAATTTGTGA  700

seq1  ATTAAGTTTCCAACCTGTTAGCTTCTGGGGAGACACATTCAAACCACAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTCCAACCTGTTAGCTTCTGGGGAGACACATTCAAACCACAAT  750

seq1  GGGGACAAACTGACATCTAGTCAGCCCCCAGGAAGACAAGCCCTGAAAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAACTGACATCTAGTCAGCCCCCAGGAAGACAAGCCCTGAAAGA  800

seq1  AAAGGCACTTAGAACATGTCCACAAAGCTCCAAGGCAGGGAATTC  837
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTAGAACATGTCCACAAAGCTCCAAGGCAGGGAATTC  845

seq1: chr1_64867328_64868477
seq2: B6Ng01-120N10.g_66_1205

seq1  GAATTCCAGCATGGTGATGAGCCTCACTCACTGTGTGCTCCTCACAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATGGTGATGAGCCTCACTCACTGTGTGCTCCTCACAAGGC  50

seq1  ATGGGCCATCCACGAGACTGCTGATCCCAGCACGAGCCACGGATCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATCCACGAGACTGCTGATCCCAGCACGAGCCACGGATCTGCCT  100

seq1  CTAATGCCCCCCCCTGCCCCCCTCCCGTCACCGTATGTGCTGGCCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCCCCCCCTGCCCCCCTCCCGTCACCGTATGTGCTGGCCTGCAA  150

seq1  ATATTGATGAGTTTGGAACTCATGGCAGTCACTTATTAACTACATTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGAGTTTGGAACTCATGGCAGTCACTTATTAACTACATTACTA  200

seq1  ATGCACTTAACTACTGCTCATGGGCTTCAAAGACTTCAGCACCTCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTAACTACTGCTCATGGGCTTCAAAGACTTCAGCACCTCACACA  250

seq1  GCAATAACAGTGAGTCTGCCTTTTATTTCTGTACCGTTAATGTCTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACAGTGAGTCTGCCTTTTATTTCTGTACCGTTAATGTCTGCTTA  300

seq1  TATGGGCTGACTTTGATATCAGGAAAAAAGGTGAAATTAACTTAGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTGACTTTGATATCAGGAAAAAAGGTGAAATTAACTTAGGGACT  350

seq1  GCCATAAATAACAATAGCTACCTGGGTACCCCCCCTTTTTTTTTCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAATAACAATAGCTACCTGGGTACCCCCCCTTTTTTTTTCAAATA  400

seq1  AGTGCCTAGTTTAAAATGACAATTTTACCTCCAACTAACACCTAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTAGTTTAAAATGACAATTTTACCTCCAACTAACACCTAACAGAG  450

seq1  ACACAGTAAGACTTCGAGAAAAGTAATCTGTCCTTTATTGAAAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGACTTCGAGAAAAGTAATCTGTCCTTTATTGAAAAAAAATG  500

seq1  AGGCTACACTAGAGATGGAAGTGGAGAAGCATTTTAAGCCTTAGGAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACTAGAGATGGAAGTGGAGAAGCATTTTAAGCCTTAGGAACAA  550

seq1  GACCATGATGCTAACAACTTCAGCAACTGTTAACTTGGGCGGGAGGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGATGCTAACAACTTCAGCAACTGTTAACTTGGGCGGGAGGAACA  600

seq1  AGTCAGATAGATCAGCTGCTGCTCTGTATTACTGTGGGTCTTTGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATAGATCAGCTGCTGCTCTGTATTACTGTGGGTCTTTGACTTTG  650

seq1  ATAGTAGGGAATGTATATTATTTTGCACTGAAATACAAAAAGTGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGGAATGTATATTATTTTGCACTGAAATACAAAAAGTGAATATA  700

seq1  AAATCAAGTTTACTGCTTTTCAGAGATAGATCTTTTCCTAACAGGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTTTACTGCTTTTCAGAGATAGATCTTTTCCTAACAGGGAGGT  750

seq1  AGAGATTACAGTGGCTGTTTTCTGAGCTAGGCCAGCATGCAGTCACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACAGTGGCTGTTTTCTGAGCTAGGCCAGCATGCAGTCACATCA  800

seq1  CTTCCCTCCATAACCTACAGAAAGCTGTAGGTACACTAGACCTGTTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCATAACCTACAGAAAGCTGTAGGTACACTAGACCTGTTTCAG  850

seq1  TTCTGTTCTCTCAGGGACCGTTAACTCCAACAACCCCAGGAAGGCACGCA  900
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  TTCTGTTCTCTCAGGGACCGTTACCTCCAAC-ACCCCAGGAAGGCACGCA  899

seq1  CCTAACACCAACATCTGATACACGCTGTCTAGGAAATATCCAACCACCAA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTAACACCAACATCTGATACACGCTGTCTAGG-AATATCCAACCACCAA  948

seq1  GCTCTTCTACACTGTGATAGCAATTCTCTTGAGTTTGGCTTCCTTTCTCT  1000
      |||||||||||||||||||||||||||| ||||||| ||| | |||||||
seq2  GCTCTTCTACACTGTGATAGCAATTCTC-TGAGTTT-GCTCCTTTTCTCT  996

seq1  TACTTAATCAGTCACGACTAATGACTCATTTAAAGAACGGGCTGAGGATT  1050
      ||| ||||||||||||||||||||||||||  |||||| |||||||||||
seq2  TAC-TAATCAGTCACGACTAATGACTCATT--AAGAAC-GGCTGAGGATT  1042

seq1  TAGGATGGTCTGAAAACCAGGTGAGTACAGGTG-ATGAGAAGACCTGGAT  1099
      || ||||||||||||||||||||||| || ||| ||    |||| |||||
seq2  TA-GATGGTCTGAAAACCAGGTGAGT-CAAGTGTATTGACAGACTTGGAT  1090

seq1  CTAAAGGAGATTGAGCA-TCATGACCTAGGTTTTTCTCTATCTAGAATTT  1148
      || ||||||  |||||| || ||||||| |||||||||||||||||||||
seq2  CT-AAGGAGTATGAGCACTCTTGACCTA-GTTTTTCTCTATCTAGAATTT  1138

seq1  AT  1150
      ||
seq2  AT  1140