BAC Information

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BAC

Clone NameB6Ng01-120O10
Chromosome1 (Build37)
Map Location 170,027,267 - 170,133,659
singlet/doubletdoublet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120O10.bB6Ng01-120O10.g
ACCDH924724DH924725
length1,1811,056
definitionDH924724|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O10, 5' end.DH924725|Mus musculus domesticus DNA, BAC clone: B6Ng01-120O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,027,267 - 170,028,450)(170,132,597 - 170,133,659)
sequence
gaattccatcttattgttttataatattctgggattctttcctgttttgt
tagacaatgaggttcttccttcaaattgaaaaccaagtaccactgctttc
cttgtgcagtggcttccgtgcttatggagttattttcttagcataacttt
ctagaatatagcttaagaattttttgatacagtaagattttgtgaattgc
aaggggtcacactcctcaattatacctatcacaagctgaaaatattataa
gtgaagaagtttcccttaaatacactaacccaccaaagacagcggctggg
ctattggaattttttttaatcagttaaggtgttaacagataaagtgtttg
gagcaaagcaaaggtttcattgcttattggcaagctccgtagactctgtg
tgtagaagagtggttcaaaagctgggagacattgtctctgaaggcatttt
ggtttatactgcatttgaggtatccctcccagtgtcccctcctatcttgt
tttgtagtgtcctaaaggtgtctgtgtggccctctatagaaaaggtcggg
tctttctagccatacacatggaaataactgcaataggactccctcccctg
cctcagagtaagaaggcagtgtagtaacaaggtccctctccatggtgcat
aggcacaggaacagatgttgcctagatttgtctctttctttgtggtagaa
ccaggaaaagactcgtcgcaggaatgggaaacgacgcaggaatggaaatg
atgtagaaagcagaaatgacctacttttcaggaaaatagaaaatttctgc
tagagacaaaagccatacaatagaaaccaactaaacaaccaactaaccaa
ccaaccaaccaaccaaccaaccaaccaacaacaacaaatgaggtcattat
atccccattttttctcctccttgggcccacagcctcacaaacatccttga
tcacagtccagcactctgtaaggcaccatcaggactttcctccactgttc
acatgactgacaggagctatggaactctgcagcaggccatcttcagccat
ttcccatttaaagaattgtatggagaccatcagaatcagggtctattttg
gtttggtgtgttggctggttgtttaatccggaatgaaacaggatggcgtg
cttttattattcatcttaagacagaatcatg
gaattcaccacccacgtgatgaacctccttcgagagcaaagccggaccag
gcccatctctccgaaggagatcgagcggatggtgagcatcatccaccgca
agttcagctccatccagatgcagctgaaacagagcacgtgcgaggccgtc
atgatcctgcgctcccggttcctggatgcgaggtgagtcctacgtgttgt
cgtctagaaaggctgtcaggtcctttaaagagactccagcaggctctggg
ttcatggattggctctctccaaagcttcaattcttctgcattgaatgctg
tgccatacactagcttgtgtgaaggtctaaggtccgagaaacacagacta
ggagacaggatagcctgttggtttcatgtagtgctgatagaatccatggt
tgcaggagataatgtttatttctgctgttcctctgggtgagcagcatagg
tgacagggagcggcctggaaggggggttgttgttgttattgttacaccgc
actgtttccttgtcttacagggacatatcataacgaagtactcactgcca
ctctattagcacaccatagtgacagttttcctccaagaaggcttctaact
gtgtgaaagccaggatctttcccataccgtagagatagagaactccatta
aattcaagaactattctgtagtagattaccatgcacaatactgcgggctg
cttaagaagttcagagttgagcaacccatgcttccctgagcatagagtca
agaaagtggcttgataagagacccagtggcttggtttgatgttttctatc
tggcttcagtatgttcatggccttacttataagttaatatttttttgaca
aaaaaaaaaaagaggtcttaatagcccttttaaaaaaatgagaatttaaa
gcaaagactagaaccaattcttatttttctactctgtggaccagtggata
gaacctgtggcttctcttttccagcctctgagatagtactattcaggttt
gtctttacgtagaagtagatttcgataacgatctacaaatatgtctccaa
gtttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170027267_170028450
seq2: B6Ng01-120O10.b_50_1230

seq1  GAATTCCATCTTATTGTTTTATAATATTCTGGGATTCTTTCCTGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTATTGTTTTATAATATTCTGGGATTCTTTCCTGTTTTGT  50

seq1  TAGACAATGAGGTTCTTCCTTCAAATTGAAAACCAAGTACCACTGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATGAGGTTCTTCCTTCAAATTGAAAACCAAGTACCACTGCTTTC  100

seq1  CTTGTGCAGTGGCTTCCGTGCTTATGGAGTTATTTTCTTAGCATAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAGTGGCTTCCGTGCTTATGGAGTTATTTTCTTAGCATAACTTT  150

seq1  CTAGAATATAGCTTAAGAATTTTTTGATACAGTAAGATTTTGTGAATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATATAGCTTAAGAATTTTTTGATACAGTAAGATTTTGTGAATTGC  200

seq1  AAGGGGTCACACTCCTCAATTATACCTATCACAAGCTGAAAATATTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCACACTCCTCAATTATACCTATCACAAGCTGAAAATATTATAA  250

seq1  GTGAAGAAGTTTCCCTTAAATACACTAACCCACCAAAGACAGCGGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAGTTTCCCTTAAATACACTAACCCACCAAAGACAGCGGCTGGG  300

seq1  CTATTGGAATTTTTTTTAATCAGTTAAGGTGTTAACAGATAAAGTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAATTTTTTTTAATCAGTTAAGGTGTTAACAGATAAAGTGTTTG  350

seq1  GAGCAAAGCAAAGGTTTCATTGCTTATTGGCAAGCTCCGTAGACTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGCAAAGGTTTCATTGCTTATTGGCAAGCTCCGTAGACTCTGTG  400

seq1  TGTAGAAGAGTGGTTCAAAAGCTGGGAGACATTGTCTCTGAAGGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAGTGGTTCAAAAGCTGGGAGACATTGTCTCTGAAGGCATTTT  450

seq1  GGTTTATACTGCATTTGAGGTATCCCTCCCAGTGTCCCCTCCTATCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATACTGCATTTGAGGTATCCCTCCCAGTGTCCCCTCCTATCTTGT  500

seq1  TTTGTAGTGTCCTAAAGGTGTCTGTGTGGCCCTCTATAGAAAAGGTCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTGTCCTAAAGGTGTCTGTGTGGCCCTCTATAGAAAAGGTCGGG  550

seq1  TCTTTCTAGCCATACACATGGAAATAACTGCAATAGGACTCCCTCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGCCATACACATGGAAATAACTGCAATAGGACTCCCTCCCCTG  600

seq1  CCTCAGAGTAAGAAGGCAGTGTAGTAACAAGGTCCCTCTCCATGGTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGTAAGAAGGCAGTGTAGTAACAAGGTCCCTCTCCATGGTGCAT  650

seq1  AGGCACAGGAACAGATGTTGCCTAGATTTGTCTCTTTCTTTGTGGTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGAACAGATGTTGCCTAGATTTGTCTCTTTCTTTGTGGTAGAA  700

seq1  CCAGGAAAAGACTCGTCGCAGGAATGGGAAACGACGCAGGAATGGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAAGACTCGTCGCAGGAATGGGAAACGACGCAGGAATGGAAATG  750

seq1  ATGTAGAAAGCAGAAATGACCTACTTTTCAGGAAAATAGAAAATTTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAGCAGAAATGACCTACTTTTCAGGAAAATAGAAAATTTCTGC  800

seq1  TAGAGACAAAAGCCATACAATAGAAACCAACTAAACAACCAACTAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAAAAGCCATACAATAGAAACCAACTAAACAACCAACTAACCAA  850

seq1  CCAACCAACCAACCAACCAACCAACCAACAAACAAACAAATGAGGTCATT  900
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  CCAACCAACCAACCAACCAACCAACCAACAA--CAACAAATGAGGTCATT  898

seq1  ATATCCCCCATTTTTCTCCTCCTTGGGCCCACAGCCTCACAAACATCCTT  950
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCCATTTTTTCTCCTCCTTGGGCCCACAGCCTCACAAACATCCTT  948

seq1  GATCAACAGTCCAGCACTCTGTAAGGCACCATCAGGACTTTCCTCCACTG  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATC-ACAGTCCAGCACTCTGTAAGGCACCATCAGGACTTTCCTCCACTG  997

seq1  TTCACATGACTGACAGGAGCTATGGAACTCTGCAGCAGGCCATCTTCAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGACTGACAGGAGCTATGGAACTCTGCAGCAGGCCATCTTCAGC  1047

seq1  CATTTCCCATTTAAAG-ATTGTATGGAGAACCATCAGAAATCAAGGTCTA  1099
      |||||||||||||||| ||||||||||| |||||||| ||||| ||||||
seq2  CATTTCCCATTTAAAGAATTGTATGGAG-ACCATCAG-AATCAGGGTCTA  1095

seq1  TTTTTGTTT-TTGTTGTTGCTGGTTTTGTTTTAATCAGAGATGAAACAGG  1148
      |||| ||||  |||  | |||||||    ||||||| |  ||||||||||
seq2  TTTTGGTTTGGTGTGTTGGCTGGTT---GTTTAATCCGGAATGAAACAGG  1142

seq1  ATGGC-TGCTTTTATATATCATCTTAAG-CAG-ATCATG  1184
      ||||| |||||||||   |||||||||| ||| ||||||
seq2  ATGGCGTGCTTTTATTATTCATCTTAAGACAGAATCATG  1181

seq1: chr1_170132597_170133659
seq2: B6Ng01-120O10.g_65_1120 (reverse)

seq1  CTAAACTATGAGACATATTTGTAGATCGGTTATCGAAATCTACTTCTACG  50
      |||||||  |||||||||||||||||| ||||||||||||||||||||| 
seq2  CTAAACTTGGAGACATATTTGTAGATC-GTTATCGAAATCTACTTCTAC-  48

seq1  GTAAAGACAAACCCTGATTAGTACTATCTCAGAGGCTGGAGAAGAGAAGC  100
      ||||||||||| ||||| |||||||||||||||||||||| |||||||||
seq2  GTAAAGACAAA-CCTGAATAGTACTATCTCAGAGGCTGGAAAAGAGAAGC  97

seq1  CACAGGTTCTAATCCACTGGTCCACAGAGTAGAAAAATTAAGAATTGGTT  150
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CACAGGTTCT-ATCCACTGGTCCACAGAGTAGAAAAA-TAAGAATTGGTT  145

seq1  CTTAGTCTTTTGCTTTAAATTCTCATTTTTTTAAAAGGGCTATTTAAGAC  200
      | ||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  C-TAGTC-TTTGCTTTAAATTCTCATTTTTTTAAAAGGGCTA-TTAAGAC  192

seq1  CTC-TTTTTTTTTTTGTCAAAAAAATATTAACTTATAAGTAAGGCCATGA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTTTTTTGTCAAAAAAATATTAACTTATAAGTAAGGCCATGA  242

seq1  ACATACTGAAGCCAGATAGAAAACATCAAACCAAGCCACTGGGTCTCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGAAGCCAGATAGAAAACATCAAACCAAGCCACTGGGTCTCTTA  292

seq1  TCAAGCCACTTTCTTGACTCTATGCTCAGGGAAGCATGGGTTGCTCAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACTTTCTTGACTCTATGCTCAGGGAAGCATGGGTTGCTCAACT  342

seq1  CTGAACTTCTTAAGCAGCCCGCAGTATTGTGCATGGTAATCTACTACAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCTTAAGCAGCCCGCAGTATTGTGCATGGTAATCTACTACAGA  392

seq1  ATAGTTCTTGAATTTAATGGAGTTCTCTATCTCTACGGTATGGGAAAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTGAATTTAATGGAGTTCTCTATCTCTACGGTATGGGAAAGAT  442

seq1  CCTGGCTTTCACACAGTTAGAAGCCTTCTTGGAGGAAAACTGTCACTATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTCACACAGTTAGAAGCCTTCTTGGAGGAAAACTGTCACTATG  492

seq1  GTGTGCTAATAGAGTGGCAGTGAGTACTTCGTTATGATATGTCCCTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAATAGAGTGGCAGTGAGTACTTCGTTATGATATGTCCCTGTAA  542

seq1  GACAAGGAAACAGTGCGGTGTAACAATAACAACAACAACCCCCCTTCCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAAACAGTGCGGTGTAACAATAACAACAACAACCCCCCTTCCAG  592

seq1  GCCGCTCCCTGTCACCTATGCTGCTCACCCAGAGGAACAGCAGAAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTCCCTGTCACCTATGCTGCTCACCCAGAGGAACAGCAGAAATAAA  642

seq1  CATTATCTCCTGCAACCATGGATTCTATCAGCACTACATGAAACCAACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTCCTGCAACCATGGATTCTATCAGCACTACATGAAACCAACAG  692

seq1  GCTATCCTGTCTCCTAGTCTGTGTTTCTCGGACCTTAGACCTTCACACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTGTCTCCTAGTCTGTGTTTCTCGGACCTTAGACCTTCACACAA  742

seq1  GCTAGTGTATGGCACAGCATTCAATGCAGAAGAATTGAAGCTTTGGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTATGGCACAGCATTCAATGCAGAAGAATTGAAGCTTTGGAGAG  792

seq1  AGCCAATCCATGAACCCAGAGCCTGCTGGAGTCTCTTTAAAGGACCTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCCATGAACCCAGAGCCTGCTGGAGTCTCTTTAAAGGACCTGAC  842

seq1  AGCCTTTCTAGACGACAACACGTAGGACTCACCTCGCATCCAGGAACCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTAGACGACAACACGTAGGACTCACCTCGCATCCAGGAACCGG  892

seq1  GAGCGCAGGATCATGACGGCCTCGCACGTGCTCTGTTTCAGCTGCATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCAGGATCATGACGGCCTCGCACGTGCTCTGTTTCAGCTGCATCTG  942

seq1  GATGGAGCTGAACTTGCGGTGGATGATGCTCACCATCCGCTCGATCTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCTGAACTTGCGGTGGATGATGCTCACCATCCGCTCGATCTCCT  992

seq1  TCGGAGAGATGGGCCTGGTCCGGCTTTGCTCTCGAAGGAGGTTCATCACG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAGATGGGCCTGGTCCGGCTTTGCTCTCGAAGGAGGTTCATCACG  1042

seq1  TGGGTGGTGAATTC  1063
      ||||||||||||||
seq2  TGGGTGGTGAATTC  1056