BAC Information

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BAC

Clone NameB6Ng01-121D22
Chromosome1 (Build37)
Map Location 124,873,386 - 125,009,986
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D22.bB6Ng01-121D22.g
ACCDH924977DH924978
length1,1921,063
definitionDH924977|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D22, 5' end.DH924978|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,873,386 - 124,874,585)(125,008,962 - 125,009,986)
sequence
gaattctgtgtgagatagctaaggagatattttggatgaacattaataaa
tgaagataaatccatctttaaacagaatagtattgaaagtaagcaaggca
ctttaataaatataatctcagatctggagaaatggctcagaggttaagag
tacatcttgttttcacagatgactgcagctaggttcctgcaagctgcctg
gaaggctcatattgggcctataattctagttccagtgggtttcctctgcc
tctgaagacacctgcactcacatgcacacactcataaacacacatgcacc
tacagttgcaaccatatattttctaatatgaaatgcagagtttgctaaga
ttatatggagcatcatctgatctaattatggtctggaaatgaaggttctc
agaggcccactcatcttaatttaaaccacatcattttgtcaaagacccct
ctataaatcagagctggaggggtcacaaactaaaaatatcatgccaattt
ctatctcagcatggccatctgacatcaacataggtgcaaggtagttaatt
aatctctcagagaattaatctctagttccatctcttataaaatacagcca
gcagcatttcaagttcaggcttgtgttgaatctaaggtaattgtcatgtt
gcttaatacacgatgcattggttatttataaacagccacaactatgcaaa
atgttgtggtttatgagtttttcttcacagttcttggagacggcagcctg
agttcatgcagatggatcattactttcacattttccctcagctcacattt
atactttgcgtatgatttccatatgtaaatgtctttctttgacatttgac
agtcgatgcatccatcaagggaaaatgtttccttcacttcatggaagtga
gtttaaatacttccctgatgacatgggtcagaggttatatcatgtagcat
ttctgtaagtacacagagtataaggtgaaataatgcaaacactagagctg
ccagtcagtgatggagtgccagcctagcatgcaggaagcctggggttaat
acctgataccacagtaactaggggtggtgggtgcaactgcatccagcact
tgtaagtaaaggcaagaggatcgcaaaaacaatgtccagtgggtttaagc
cagaatctggccgaactgtgatacttggattactcacctcaa
gaattcactcccccaactattgaacaggagaacaggagtttgtgtccctg
tctaaccttgaactcttgggttacttttatgtggcatgtgtgagtaaaca
ggaaaagtaaaatttagacactgacaaattggagcagagtttggcataag
gttataaactgctatcaagtaattagaataattatcaatgaagtatcaca
tgcctgtgaaaaattgccactaaccatcttagaaacattgtaaacatttt
aaattaatttccagtagcacaagttctatgatcagaaagttctttataaa
aacctatttaatcaagagcaactggaatttagcactctgattttataatg
aaatgtgtgtgtgtatgtgtatgttcatgtgtatgcacagatatttttaa
gtgcatgcagttgtctacagagtccagaagacgaaatctaatctcctgcc
actatgattacagtagtagacctctcattatgctgttgttatctgatttt
ggaacctctaaaaggatacctagtgatcttaacaagccatttctccagcc
cctcactggttatatactataaatttacaggaccacctactgatgaaata
ttaaaagtaaaaacaaaataacaaatagagtccttggttggcacggaact
tgttatgtagacctccaacttataaaaaattatatctgcttcttcctttc
agtgccgatattaatgtttacacacccccatcgaacctgaaaatgaaaaa
ttaaaatgcagcacttttatgttttgattaatgttttaaagaacttgtcc
aagctttctgaaataactttagttttttaaaccatttatttatttatact
ccagattttactcccctccagtccaccttcctccaactgttcacatcaca
tacctctccctacccctgtctctatgaggatatcccatcatacactactt
acactctaacgtagacctctatgtggtaattacacatggaatactactca
gctattaaaatgattatgaaatcctaggcaatggatggactggaggcatc
atctgagtaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_124873386_124874585
seq2: B6Ng01-121D22.b_46_1237

seq1  GAATTCTGTGTGAGATAGCTAAGGAGATATTTTGGATGAACATTAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGAGATAGCTAAGGAGATATTTTGGATGAACATTAATAAA  50

seq1  TGAAGATAAATCCATCTTTAAACAGAATAGTATTGAAAGTAAGCAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAAATCCATCTTTAAACAGAATAGTATTGAAAGTAAGCAAGGCA  100

seq1  CTTTAATAAATATAATCTCAGATCTGGAGAAATGGCTCAGAGGTTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAAATATAATCTCAGATCTGGAGAAATGGCTCAGAGGTTAAGAG  150

seq1  TACATCTTGTTTTCACAGATGACTGCAGCTAGGTTCCTGCAAGCTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTGTTTTCACAGATGACTGCAGCTAGGTTCCTGCAAGCTGCCTG  200

seq1  GAAGGCTCATATTGGGCCTATAATTCTAGTTCCAGTGGGTTTCCTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCATATTGGGCCTATAATTCTAGTTCCAGTGGGTTTCCTCTGCC  250

seq1  TCTGAAGACACCTGCACTCACATGCACACACTCATAAACACACATGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACACCTGCACTCACATGCACACACTCATAAACACACATGCACC  300

seq1  TACAGTTGCAACCATATATTTTCTAATATGAAATGCAGAGTTTGCTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGCAACCATATATTTTCTAATATGAAATGCAGAGTTTGCTAAGA  350

seq1  TTATATGGAGCATCATCTGATCTAATTATGGTCTGGAAATGAAGGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGAGCATCATCTGATCTAATTATGGTCTGGAAATGAAGGTTCTC  400

seq1  AGAGGCCCACTCATCTTAATTTAAACCACATCATTTTGTCAAAGACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCACTCATCTTAATTTAAACCACATCATTTTGTCAAAGACCCCT  450

seq1  CTATAAATCAGAGCTGGAGGGGTCACAAACTAAAAATATCATGCCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATCAGAGCTGGAGGGGTCACAAACTAAAAATATCATGCCAATTT  500

seq1  CTATCTCAGCATGGCCATCTGACATCAACATAGGTGCAAGGTAGTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGCATGGCCATCTGACATCAACATAGGTGCAAGGTAGTTAATT  550

seq1  AATCTCTCAGAGAATTAATCTCTAGTTCCATCTCTTATAAAATACAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCAGAGAATTAATCTCTAGTTCCATCTCTTATAAAATACAGCCA  600

seq1  GCAGCATTTCAAGTTCAGGCTTGTGTTGAATCTAAGGTAATTGTCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTCAAGTTCAGGCTTGTGTTGAATCTAAGGTAATTGTCATGTT  650

seq1  GCTTAATACACGATGCATTGGTTATTTATAAACAGCCACAACTATGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATACACGATGCATTGGTTATTTATAAACAGCCACAACTATGCAAA  700

seq1  ATGTTGTGGTTTATGAGTTTTTCTTCACAGTTCTTGGAGACGGCAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGGTTTATGAGTTTTTCTTCACAGTTCTTGGAGACGGCAGCCTG  750

seq1  AGTTCATGCAGATGGATCATTACTTTCACATTTTCCCTCAGCTCACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGCAGATGGATCATTACTTTCACATTTTCCCTCAGCTCACATTT  800

seq1  ATACTTTGCGTATGATTTCCATATGTAAATGTCTTTCTTTGACATTTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCGTATGATTTCCATATGTAAATGTCTTTCTTTGACATTTGAC  850

seq1  AGTCGATGCATCCATCAAGGGAAAATGTTTCCTTCACTTCATGGAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATGCATCCATCAAGGGAAAATGTTTCCTTCACTTCATGGAAGTGA  900

seq1  GTTTAAATACTTCCCTGATGACATGGGTCAGAGGTTATATCATGTAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATACTTCCCTGATGACATGGGTCAGAGGTTATATCATGTAGCAT  950

seq1  TTCTGTAAGTACACAGAGTATAAGGTGAAATAATGCAAACAACTAAGAGC  1000
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TTCTGTAAGTACACAGAGTATAAGGTGAAATAATGCAAAC-ACT-AGAGC  998

seq1  TGCCAGTCAGGTGATGGAGTGCCAGCCTAGCATGCAGGAAGCCTGGGGTT  1050
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TGCCAGTCA-GTGATGGAGTGCCAGCCTAGCATGCAGGAAGCCTGGGG-T  1046

seq1  TAATACCTGATACCACAGTAACTAGGTGTGGT-GGTGCATACCTGCAATT  1099
      |||||||||||||||||||||||||| ||||| |||||  | |||||  |
seq2  TAATACCTGATACCACAGTAACTAGGGGTGGTGGGTGC--AACTGCA--T  1092

seq1  CCAGCACTTGGAAAGTAGAGGCAAGAGGATCGCAAAGACAATGTCACAGT  1149
      ||||||||| | ||||| |||||||||||||||||| |||||||| ||||
seq2  CCAGCACTT-GTAAGTAAAGGCAAGAGGATCGCAAAAACAATGTC-CAGT  1140

seq1  TGGTTTTAGCCAGTATCTGGCCAGACTGTGATACATGGATTACTCA-CTC  1198
       ||||| |||||| ||||||||  |||||||||| ||||||||||| |||
seq2  GGGTTTAAGCCAGAATCTGGCCGAACTGTGATACTTGGATTACTCACCTC  1190

seq1  AA  1200
      ||
seq2  AA  1192

seq1: chr1_125008962_125009986
seq2: B6Ng01-121D22.g_124_1130 (reverse)

seq1  TACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATT  50
      ||||| ||||| ||||||| |||||| ||||||||| ||||||||| |||
seq2  TACCT-ACTCA-GATGATG-CCTCCA-GTCCATCCA-TTGCCTAGG-ATT  44

seq1  TCATAAATTCATTTTTTAATAGCTGAGTAGTATTCCATTGTGTAAATTAA  100
      ||||||  |||  |||||||||||||||||||||||| |||||||  | |
seq2  TCATAA--TCA--TTTTAATAGCTGAGTAGTATTCCA-TGTGTAA--TTA  87

seq1  CCACATAGAGGTCTACGTTTAGAGTGTAAGTAGTGTATGATGGGGATATC  150
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  CCACATAGAGGTCTACG-TTAGAGTGTAAGTAGTGTATGAT-GGGATATC  135

seq1  CTCATAGAGACAGGGGGTAGGGAGGAGGTATGTGATGTGGAACAGTTGGA  200
      |||||||||||| |||||||||| |||||||||||||| |||||||||||
seq2  CTCATAGAGACA-GGGGTAGGGA-GAGGTATGTGATGT-GAACAGTTGGA  182

seq1  GGAAGGTGGACTGGGAGGGGAGTAAAATCTGGAGTATAAATAAATAAATG  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGACT-GGAGGGGAGTAAAATCTGGAGTATAAATAAATAAATG  231

seq1  GTTTAAAAAACTAAAGTTATTTCAGAAAGCTTGGACAAGTTCTTTAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAACTAAAGTTATTTCAGAAAGCTTGGACAAGTTCTTTAAAAC  281

seq1  ATTAATCAAAACATAAAAGTGCTGCATTTTAATTTTTCATTTTCAGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCAAAACATAAAAGTGCTGCATTTTAATTTTTCATTTTCAGGTTC  331

seq1  GATGGGGGTGTGTAAACATTAATATCGGCACTGAAAGGAAGAAGCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGTGTGTAAACATTAATATCGGCACTGAAAGGAAGAAGCAGATA  381

seq1  TAATTTTTTATAAGTTGGAGGTCTACATAACAAGTTCCGTGCCAACCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTATAAGTTGGAGGTCTACATAACAAGTTCCGTGCCAACCAAG  431

seq1  GACTCTATTTGTTATTTTG-TTTTACTTTTAATATTTCATCAGTAGGTGG  499
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACTCTATTTGTTATTTTGTTTTTACTTTTAATATTTCATCAGTAGGTGG  481

seq1  TCCTGTAAATTTATAGTATATAACCAGTGAGGGGCTGGAGAAATGGCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAAATTTATAGTATATAACCAGTGAGGGGCTGGAGAAATGGCTTG  531

seq1  TTAAGATCACTAGGTATCCTTTTAGAGGTTCCAAAATCAGATAACAACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCACTAGGTATCCTTTTAGAGGTTCCAAAATCAGATAACAACAG  581

seq1  CATAATGAGAGGTCTACTACTGTAATCATAGTGGCAGGAGATTAGATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAGAGGTCTACTACTGTAATCATAGTGGCAGGAGATTAGATTTC  631

seq1  GTCTTCTGGACTCTGTAGACAACTGCATGCACTTAAAAATATCTGTGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGGACTCTGTAGACAACTGCATGCACTTAAAAATATCTGTGCAT  681

seq1  ACACATGAACATACACATACACACACACATTTCATTATAAAATCAGAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAACATACACATACACACACACATTTCATTATAAAATCAGAGTG  731

seq1  CTAAATTCCAGTTGCTCTTGATTAAATAGGTTTTTATAAAGAACTTTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCCAGTTGCTCTTGATTAAATAGGTTTTTATAAAGAACTTTCTG  781

seq1  ATCATAGAACTTGTGCTACTGGAAATTAATTTAAAATGTTTACAATGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGAACTTGTGCTACTGGAAATTAATTTAAAATGTTTACAATGTTT  831

seq1  CTAAGATGGTTAGTGGCAATTTTTCACAGGCATGTGATACTTCATTGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGGTTAGTGGCAATTTTTCACAGGCATGTGATACTTCATTGATA  881

seq1  ATTATTCTAATTACTTGATAGCAGTTTATAACCTTATGCCAAACTCTGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTAATTACTTGATAGCAGTTTATAACCTTATGCCAAACTCTGCT  931

seq1  CCAATTTGTCAGTGTCTAAATTTTACTTTTCCTGTTTACTCACACATGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGTCAGTGTCTAAATTTTACTTTTCCTGTTTACTCACACATGCC  981

seq1  ACATAAAAGTAACCCAAGAGTTCAAG  1025
      ||||||||||||||||||||||||||
seq2  ACATAAAAGTAACCCAAGAGTTCAAG  1007