BAC Information

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BAC

Clone NameB6Ng01-121E21
Chromosome1 (Build37)
Map Location 93,779,205 - 93,900,692
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneMlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E21.bB6Ng01-121E21.g
ACCDH925023DH925024
length154848
definitionDH925023|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E21, 5' end.DH925024|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,900,538 - 93,900,692)(93,779,205 - 93,779,901)
sequence
gaattcatgatccctccaagtccatgcattggcagactgtgggactaggg
ggtgggagagtagtactggagggtggtggtttctgtctagggtctgtaga
tcctccaccctccatgcctgcagatcagtggggcagcctgcgcacttggg
ctgc
gaattcctgtcctctcttcccataggccaggacttgcccttcctaaatct
cccttctcattggctgaagacacaaactttatctaatgggtaacttgggc
tgtgggctcagtcctgcagactgtctgcaactttccagttctcggggttt
gggataagtgggtgcacgctgtcagctcagggagacagagacttcagcca
tccttccttctaggctcctgaaaggcaccatgcacaactgatatctgtgg
tcaccctgtggagaggcaacacagaagatctaccaggcctccatgcttgg
cttaactgtagcttagcttctgctagtcccggtatccctacctgcctcct
agtctcccagcctttgcccatcactgggagatcagcctggttagatccca
cacatgagagcacaaagtgttggcctttttgtgtctgccttatttctcta
aaaacaaaatctatctctactgccttctgcaacatagtagaagcttccac
gtgctcaggaaggctgaatggtgttccctagccagtgagtaccatgcttc
ctttattcaatagtcatttgatagacacaggcagccctgtgttcacccca
tttgagaactgtgccaggtgaacaccagtgtgcacacgtctcggggacac
actgattttgctttgttttctttggctgtacgcccagctgtgggactgct
gatcttgctgtagcttcacatgtttgtttttctgaggaagcgacattcca
ttcttcatagtgactaaagtatttaccctcagcacagtgtgcagggcttc
ccttccctccatgtctccaccagcactggcagatgccttacctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93900538_93900692
seq2: B6Ng01-121E21.b_47_200 (reverse)

seq1  GCAGCCCAAGTGCCCAGGCTGCCCCACTGATCTGCAGGCATGGAGGGTGG  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCAAGTGCGCAGGCTGCCCCACTGATCTGCAGGCATGGAGGGTGG  50

seq1  AGGATCTACAGACCCTAGACAGCAAACCACCACCCTCCAGTACTACTCTC  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGATCTACAGACCCTAGACAG-AAACCACCACCCTCCAGTACTACTCTC  99

seq1  CCACCCCCTAGTCCCACAGTCTGCCAATGCATGGACTTGGAGGGATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCTAGTCCCACAGTCTGCCAATGCATGGACTTGGAGGGATCATG  149

seq1  AATTC  155
      |||||
seq2  AATTC  154

seq1: chr1_93779205_93779901
seq2: B6Ng01-121E21.g_65_761

seq1  GAATTCCTGTCCTCTCTTCCCATAGGCCAGGACTTGCCCTTCCTAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTCTCTTCCCATAGGCCAGGACTTGCCCTTCCTAAATCT  50

seq1  CCCTTCTCATTGGCTGAAGACACAAACTTTATCTAATGGGTAACTTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCATTGGCTGAAGACACAAACTTTATCTAATGGGTAACTTGGGC  100

seq1  TGTGGGCTCAGTCCTGCAGACTGTCTGCAACTTTCCAGTTCTCGGGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTCAGTCCTGCAGACTGTCTGCAACTTTCCAGTTCTCGGGGTTT  150

seq1  GGGATAAGTGGGTGCACGCTGTCAGCTCAGGGAGACAGAGACTTCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGTGGGTGCACGCTGTCAGCTCAGGGAGACAGAGACTTCAGCCA  200

seq1  TCCTTCCTTCTAGGCTCCTGAAAGGCACCATGCACAACTGATATCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCTAGGCTCCTGAAAGGCACCATGCACAACTGATATCTGTGG  250

seq1  TCACCCTGTGGAGAGGCAACACAGAAGATCTACCAGGCCTCCATGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGTGGAGAGGCAACACAGAAGATCTACCAGGCCTCCATGCTTGG  300

seq1  CTTAACTGTAGCTTAGCTTCTGCTAGTCCCGGTATCCCTACCTGCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGTAGCTTAGCTTCTGCTAGTCCCGGTATCCCTACCTGCCTCCT  350

seq1  AGTCTCCCAGCCTTTGCCCATCACTGGGAGATCAGCCTGGTTAGATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGCCTTTGCCCATCACTGGGAGATCAGCCTGGTTAGATCCCA  400

seq1  CACATGAGAGCACAAAGTGTTGGCCTTTTTGTGTCTGCCTTATTTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGAGCACAAAGTGTTGGCCTTTTTGTGTCTGCCTTATTTCTCTA  450

seq1  AAAACAAAATCTATCTCTACTGCCTTCTGCAACATAGTAGAAGCTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTATCTCTACTGCCTTCTGCAACATAGTAGAAGCTTCCAC  500

seq1  GTGCTCAGGAAGGCTGAATGGTGTTCCCTAGCCAGTGAGTACCATGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGGAAGGCTGAATGGTGTTCCCTAGCCAGTGAGTACCATGCTTC  550

seq1  CTTTATTCAATAGTCATTTGATAGACACAGGCAGCCCTGTGTTCACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAATAGTCATTTGATAGACACAGGCAGCCCTGTGTTCACCCCA  600

seq1  TTTGAGAACTGTGCCAGGTGAACACCAGTGTGCACACGTCTCGGGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACTGTGCCAGGTGAACACCAGTGTGCACACGTCTCGGGGACAC  650

seq1  ACTGATTTTGCTTTGTTTTCTTTGGCTGTACGCCCAGCTGTGGGACT  697
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTGCTTTGTTTTCTTTGGCTGTACGCCCAGCTGTGGGACT  697