BAC Information

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BAC

Clone NameB6Ng01-121L16
Chromosome1 (Build37)
Map Location 145,538,335 - 145,539,498
singlet/doubletsinglet
Overlap geneCdc73
Upstream geneLOC545369, B3galt2, LOC623138
Downstream geneGlrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121L16.bB6Ng01-121L16.g
ACCDH925340DH925341
length1,2471,157
definitionDH925340|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L16, 5' end.DH925341|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggacgaaattcaagacagtctatcagaggtaaagcggggagag
agagtaggagcaaagaggaaacatggtgcacctattaagcatacaggcct
ttccatgggtcttgaacccgaggaaaagttaatgtcagggaagaatacct
ggggagagattggaaggaaggagaaggaaaaagaaagaaaaaagatcaat
cagcggaggtttctaggagaaggaacttatacccgccactagatgagttt
aagcggctagctcttagtagctcagaatcagatgaaggacttagctcctc
tgaagaaacggacttggaggaggtagcagttcgttataagggagaaaggt
accagcaagataaaaagcgagctactcagaacagaaaaaggcaaaaagcg
gctggcgaaagccagcttgctgctcggcctccggactgtcggcttcaggg
tcccagaggtaccattcagagccttatgtgcagaggtaccattcagagcc
ttatgtgcagaggtaccattcagagccttatgtgcagaggtatcattcag
attcattcattccaaaagaggaacagagaaaagtgcagcaggtgttccca
gtttttgaaggagctgagggagggcgtgttcacgctcccgtagagtatat
acagattaaggagctcgcagaagcagttcgcaattatggagtcagcgcta
atttcactataccacaagtcgaaaggcttgcgaatcaggatatgactcct
ggtgattggcagactgtggtaaaagctgcagcccccagtatgggaatgta
tcttgagtggaaagccttgtggcaggactcctgccagacgcaggcaaggg
ccaatgccaccatggaagggaccaaagaacgtggacgtttgaattactta
caggtcaggacagcatgctgctaaccaaacagattatcattgggggagcg
tacgctcagatctcagctgccgctgttaaggcatggaaggcactctctaa
agaaggagaaggcaagttgacatttgaccaagaatactcaagtgcacaga
agtctttttaagactttgtggccagaatgacgaagcaagcaaggaagaaa
tttgggagaacccagaaagcagctatgccttttaatggaacatggttatg
gaacaagctacccagaattgcgaatcgcaattacactagaaaagagatat
ggtttaactgaaccttcataaggttgctgctgtgtgaacgctcgtaa
gaattcttatttctacacaattctacttttaataacaaaataaattattt
taaaaatagagttctattacctcaatccgtggtttctttgcttctgctaa
aacttcatctgcagctcttttgactacaacaaaaataaatataagtaagt
gtgtactttataaaaggggtttttatttagtgttcaagataatgatgtat
caggtgtaccttgagtagaccgctgaagacctatttccaagggggcactc
ctgtctatgcttgctgatgttgctgaaatggaaaagaaaattcataagca
aaccggtatttgaatatgaaaaaatatatatatatggtattattctaagg
gaaacagtcaagctttgttttatttcttatatccataggatttccccagg
taaatggtttcaaaagcagctctataacagtactttattaacaagatgac
tcagaattagaattagaaagtctgtgaaagaacaactatataggattttt
ttaaataaataggattttattacataaagaaaggtatgaggttggatgtc
attttgtattttacaatggtcagagatatcctcatggacagaagaatatt
tgagcactgatggaagatgagagcctaatgacaatacagacaactgaaga
cagaattgcaaagacagaacctgagattcagtagaccaatacaagatcaa
taaccggctgccggggataaaagaagactgatggcacccatggaaaggag
ttacagagacaaaatttggagctgtgaagaaaggatggaccatctagtga
ttgccatatgcagggatccatcccataatcagcttccaaacgctgacaca
ttgcatacactagcaggattttgctgaaaggaccctgatataagctgtct
ctggtgagactatgccggggcctagcaaacaagaagtggatgatcacagt
cagctattggatggatcacaaggcccctaatggagagctagaggatctgc
aacccttataggtggaacaacattatgaactaaccagtaccggagctctt
ggactctagcttgcattgtatcaaagaaatgcctagtcggccatccctgc
aagaaagagccattggacttgcaaccttatgcccagattaggggaatgca
gggccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_145538335_145539498
seq2: B6Ng01-121L16.g_66_1222

seq1  GAATTCTTATTTCTACACAATTCTACTTTTAATAACAAAATAAATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTCTACACAATTCTACTTTTAATAACAAAATAAATTATTT  50

seq1  TAAAAATAGAGTTCTATTACCTCAATCCGTGGTTTCTTTGCTTCTGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGAGTTCTATTACCTCAATCCGTGGTTTCTTTGCTTCTGCTAA  100

seq1  AACTTCATCTGCAGCTCTTTTGACTACAACAAAAATAAATATAAGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATCTGCAGCTCTTTTGACTACAACAAAAATAAATATAAGTAAGT  150

seq1  GTGTACTTTATAAAAGGGGTTTTTATTTAGTGTTCAAGATAATGATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTTATAAAAGGGGTTTTTATTTAGTGTTCAAGATAATGATGTAT  200

seq1  CAGGTGTACCTTGAGTAGACCGCTGAAGACCTATTTCCAAGGGGGCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTACCTTGAGTAGACCGCTGAAGACCTATTTCCAAGGGGGCACTC  250

seq1  CTGTCTATGCTTGCTGATGTTGCTGAAATGGAAAAGAAAATTCATAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGCTTGCTGATGTTGCTGAAATGGAAAAGAAAATTCATAAGCA  300

seq1  AACCGGTATTTGAATATGAAAAAATATATATATATGGTATTATTCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGTATTTGAATATGAAAAAATATATATATATGGTATTATTCTAAGG  350

seq1  GAAACAGTCAAGCTTTGTTTTATTTCTTATATCCATAGGATTTCCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCAAGCTTTGTTTTATTTCTTATATCCATAGGATTTCCCCAGG  400

seq1  TAAATGGTTTCAAAAGCAGCTCTATAACAGTACTTTATTAACAAGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTTTCAAAAGCAGCTCTATAACAGTACTTTATTAACAAGATGAC  450

seq1  TCAGAATTAGAATTAGAAAGTCTGTGAAAGAACAACTATATAGGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTAGAATTAGAAAGTCTGTGAAAGAACAACTATATAGGATTTTT  500

seq1  TTAAATAAATAGGATTTTATTACATAAAGAAAGGTATGAGGTTGGATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATAGGATTTTATTACATAAAGAAAGGTATGAGGTTGGATGTC  550

seq1  ATTTTGTATTTTACAATGGTCAGAGATATCCTCATGGACAGAAGAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATTTTACAATGGTCAGAGATATCCTCATGGACAGAAGAATATT  600

seq1  TGAGCACTGATGGAAGATGAGAGCCTAATGACAATACAGACAACTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTGATGGAAGATGAGAGCCTAATGACAATACAGACAACTGAAGA  650

seq1  CAGAATTGCAAAGACAGAACCTGAGATTCAGTAGACCAATACAAGATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGCAAAGACAGAACCTGAGATTCAGTAGACCAATACAAGATCAA  700

seq1  TAACCGGCTGCC-GGGATAAAAGAAGACTGATGGCACCCATGG-AAGGAG  748
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TAACCGGCTGCCGGGGATAAAAGAAGACTGATGGCACCCATGGAAAGGAG  750

seq1  TTACAGAGACAAAATTTGGAGCTGTGAAGAAAGGATGGACCATCTAGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGACAAAATTTGGAGCTGTGAAGAAAGGATGGACCATCTAGTGA  800

seq1  TTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACC  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACA-C  849

seq1  ATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATAT-AGCTGTC  897
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ATTGCATACACTAGCAGGATTTTGCTGAAAGGACCCTGATATAAGCTGTC  899

seq1  TCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACA  947
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGGTGAGACTATGCCGGGGCCTAGCAAACA-AGAAGTGGATGATCACA  948

seq1  GTCAGCTATTGGATGGATCACAGGGCCCCTAATGGAGGAGCTAGAGGGAT  997
      |||||||||||||||||||||| ||||||||||||| |||||||| ||||
seq2  GTCAGCTATTGGATGGATCACAAGGCCCCTAATGGA-GAGCTAGA-GGAT  996

seq1  CTGCAACCC-TATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA  1046
      ||||||||| |||||||||||||||||||||||||||||||||  |||||
seq2  CTGCAACCCTTATAGGTGGAACAACATTATGAACTAACCAGTA--CCGGA  1044

seq1  GCTCTT-GACTCTAGC-TGCATATGTATCAAAAGATGGCCTAGTCGGCCA  1094
      |||||| ||||||||| ||||| |||||||||  |  |||||||||||||
seq2  GCTCTTGGACTCTAGCTTGCAT-TGTATCAAAGAAATGCCTAGTCGGCCA  1093

seq1  TCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTA  1144
      || |||| |||| ||  ||||||||||||||| ||   |||| |||||  
seq2  TCCCTGC-AAGAAAGAGCCATTGGACTTGCAACCT---TATG-CCCAGAT  1138

seq1  TAGGGGAATGCCAGGGCCAA  1164
      |||||||||| |||||||||
seq2  TAGGGGAATG-CAGGGCCAA  1157