BAC Information

Click to search

BAC

Clone NameB6Ng01-121N08
Chromosome1 (Build37)
Map Location 177,853,239 - 177,970,268
singlet/doubletdoublet
Overlap genePld5, B020018G12Rik
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N08.bB6Ng01-121N08.g
ACCDH925416DH925417
length1,1161,122
definitionDH925416|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N08, 5' end.DH925417|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,853,239 - 177,854,372)(177,969,142 - 177,970,268)
sequence
tctttttaagacagggactcactaagttgttccaattgacctaggtagag
ctcactatgtagcccaagtctggaagttccagatactcctgccttagcat
ttcctaaaagattacaggccggcgcctgctgcgaactcaagagacattcc
attctcttttagcgcttcatcagctggcggttgtacacgccttgctaggc
gtttggggaagaattcacgtttataactgctcatctttaggcaaaggcat
cctataaggataaaatcacatccatatttggaaaaagtccttatttcagc
agccagagagtctctgctctcacccttaccctcgtttcctttgctcctca
gttcctctgataacccacaggctttcctaaggagattatttactcttctg
cttctccctgttttacatagggttactatttgctgtggtgaaacaccata
gagtgacaaaaagcaagttgaggaggaaaggctattttttggcttatatg
tccacattactgttcatcactgaaggaagtcagggctggaacctggaggc
aggagctgctgtcaaagccattgaggggtgctgctcaccagcttgcctct
tgtggcttgctcagtcagcttatagaactcatgacctccaggtcaagggt
ggcacacccttaatgggttcactaactaaaaataccctacagagctgtcc
atagccccatcttttcgaggaattttctcagttaaagctctttcctctct
gattttagattgtgtcaagttaaactagccagcaccttcaacatttatat
gtcgtattccacttgggtagagataatttttatggcatttatatatactc
aacaatttttgcaattgagggttcagtggcctcaaactggctctcctaaa
cctaaagatggtcgctaccgccctctagtggtacttcttggttctgagct
ggcagttctgaactggctggcagaagagttctatcaggacactcttacac
ttgggagacatacactgactgggcacttgatcagggtgcagattcatgta
gtctgctcatagttctctgtttgaaactagtagaaattttattagttatt
ggaaatagccaggcag
gaattcccgcccacagggaggcctgtgggaagaaagaacacctctccaca
attctcacttcatgagcacctctacacaccagggaggaaaggagaactgt
agctcataaaaaacaagtggaacaaaaggccagctagtttgagaaaggaa
ggcattcaacagtttcaggctctggaggcgggaagctgaaatgggagaag
ctggggagggaaatatgaaaatcaggcttttagaaaaagttacatttata
gtctttgagcaaaccctcttagcttggagttgaaaggtaggattcaatag
gtccattgacatcaagaacctggcaacttggggaaaggagagaaatttaa
gtattgttctttaatgggattattgtattatactatacgtagttattgaa
tagtgctctttagtgggattgcaacaaagaagaataggcttatttaaacc
ctgagtgtgtgcacaatttcatcatagctacttttattgtggaagaaatt
aaaaggtagacatgaaaataaatcagttcttgggtaggagggcatgggga
tcaggagagcagaacccacaaaagtgtcttagtcagggtttctattcctg
cacaaacatcacaaccaagaaacaagttgggaggaaagggtttattcagc
ttacacttccacagctgttcatcaccaaaggaagtcaagactggaactca
agcaggtcagaagcaggagctgatgcagaggtcatggagggatgtttctt
attggcttgcttgtcctggcttgctcagcttgctttcttatagaacacaa
gactaccagcccagagatggtcccacccacaataggccctccggccttga
tcactatttgagaaaatgccttacagctgaatctcaaggaggcagctcct
caagggaggctctttctctgtgataactctagcttgtgtcaagttgacac
acaaaacttgccagtacaatgaggaagacccttaaactcagcatttgttt
cagacttctgctgcatggacagggaccacctgttcagctcaggatctgag
tgatagtttgatcataagcttttaatctcggagctagaaattaattctgg
tggtcactcattcctgagatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177853239_177854372
seq2: B6Ng01-121N08.b_59_1174

seq1  TCTTTTTAAGACAGGGACTCACTAAGTTGTTCCAATTGACCTAGGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAGACAGGGACTCACTAAGTTGTTCCAATTGACCTAGGTAGAG  50

seq1  CTCACTATGTAGCCCAAGTCTGGAAGTTCCAGATACTCCTGCCTTAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGCCCAAGTCTGGAAGTTCCAGATACTCCTGCCTTAGCAT  100

seq1  TTCCTAAAAGATTACAGGCCGGCGCCTGCTGCGAACTCAAGAGACATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAAGATTACAGGCCGGCGCCTGCTGCGAACTCAAGAGACATTCC  150

seq1  ATTCTCTTTTAGCGCTTCATCAGCTGGCGGTTGTACACGCCTTGCTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTAGCGCTTCATCAGCTGGCGGTTGTACACGCCTTGCTAGGC  200

seq1  GTTTGGGGAAGAATTCACGTTTATAACTGCTCATCTTTAGGCAAAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGAAGAATTCACGTTTATAACTGCTCATCTTTAGGCAAAGGCAT  250

seq1  CCTATAAGGATAAAATCACATCCATATTTGGAAAAAGTCCTTATTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGGATAAAATCACATCCATATTTGGAAAAAGTCCTTATTTCAGC  300

seq1  AGCCAGAGAGTCTCTGCTCTCACCCTTACCCTCGTTTCCTTTGCTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGAGTCTCTGCTCTCACCCTTACCCTCGTTTCCTTTGCTCCTCA  350

seq1  GTTCCTCTGATAACCCACAGGCTTTCCTAAGGAGATTATTTACTCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGATAACCCACAGGCTTTCCTAAGGAGATTATTTACTCTTCTG  400

seq1  CTTCTCCCTGTTTTACATAGGGTTACTATTTGCTGTGGTGAAACACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTGTTTTACATAGGGTTACTATTTGCTGTGGTGAAACACCATA  450

seq1  GAGTGACAAAAAGCAAGTTGAGGAGGAAAGGCTATTTTTTGGCTTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAAAAAGCAAGTTGAGGAGGAAAGGCTATTTTTTGGCTTATATG  500

seq1  TCCACATTACTGTTCATCACTGAAGGAAGTCAGGGCTGGAACCTGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTACTGTTCATCACTGAAGGAAGTCAGGGCTGGAACCTGGAGGC  550

seq1  AGGAGCTGCTGTCAAAGCCATTGAGGGGTGCTGCTCACCAGCTTGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCTGTCAAAGCCATTGAGGGGTGCTGCTCACCAGCTTGCCTCT  600

seq1  TGTGGCTTGCTCAGTCAGCTTATAGAACTCATGACCTCCAGGTCAAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGCTCAGTCAGCTTATAGAACTCATGACCTCCAGGTCAAGGGT  650

seq1  GGCACACCCTTAATGGGTTCACTAACTAAAAATACCCTACAGAGCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCCTTAATGGGTTCACTAACTAAAAATACCCTACAGAGCTGTCC  700

seq1  ATAGCCCCATCTTTTCGAGGAATTTTCTCAGTTAAGGCTCTTTCCTCTCT  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGCCCCATCTTTTCGAGGAATTTTCTCAGTTAAAGCTCTTTCCTCTCT  750

seq1  GATTTTAGATTGTGTCAAGTTAAACTAGCCAGCACCTTCAACATTTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGATTGTGTCAAGTTAAACTAGCCAGCACCTTCAACATTTATAT  800

seq1  GTCGTATTCCACTTGGGTAGAGATAATTTTTATGGCATTTATATATACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATTCCACTTGGGTAGAGATAATTTTTATGGCATTTATATATACTC  850

seq1  AACAATTTTTGCAATTGAGGGTTCAGTGGCCTCAAACTGGCTCTCCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTTGCAATTGAGGGTTCAGTGGCCTCAAACTGGCTCTCCTAAA  900

seq1  CCTAAAGATGGTCGCTACCGCCCTCTAGTGGTACTTCTTGGTTCTGAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGATGGTCGCTACCGCCCTCTAGTGGTACTTCTTGGTTCTGAGCT  950

seq1  GGCAAGTTCTGAACTGGCTGGCAGAAGGAGTTCTATCAGGGACACTCTTA  1000
      ||| |||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GGC-AGTTCTGAACTGGCTGGCAGAA-GAGTTCTATCA-GGACACTCTTA  997

seq1  CCACTTGGGAAGACAATACAACTGACTGGGCAACTTTGAATCAAGGGGTG  1050
       |||||||| |||| |||| ||||||||||| ||||   ||||  |||||
seq2  -CACTTGGG-AGAC-ATAC-ACTGACTGGGC-ACTT--GATCA--GGGTG  1038

seq1  CAGATTTCATGTAGTCTGCTCATAAGGTTTCTCTGTTTTGAAACCTAGGT  1100
      |||| |||||||||||||||||||    ||||||| ||||||| ||| ||
seq2  CAGA-TTCATGTAGTCTGCTCATA---GTTCTCTG-TTTGAAA-CTA-GT  1081

seq1  AGAAATTTTTATTAGTATATG--AATAGCCAGGCAG  1134
      ||||| ||||||||||   ||  |||||||||||||
seq2  AGAAA-TTTTATTAGTTATTGGAAATAGCCAGGCAG  1116

seq1: chr1_177969142_177970268
seq2: B6Ng01-121N08.g_67_1188 (reverse)

seq1  ACATCTCAGAAAATGAGTGACCACCAG-ATTAATTTCTAGCTCCGAGATT  49
      |||||||||  |||||||||||||||| ||||||||||||||||||||||
seq2  ACATCTCAG-GAATGAGTGACCACCAGAATTAATTTCTAGCTCCGAGATT  49

seq1  AAAAGCTTATGATCCAACTTATCACTCAGATCTTGAGCTGGACAGGTGGT  99
      |||||||||||||| ||| ||||||||||||| ||||||| |||||||||
seq2  AAAAGCTTATGATCAAAC-TATCACTCAGATCCTGAGCTGAACAGGTGGT  98

seq1  CCCCTGTCCATGCAGCAGAAGTCTGAAACAAATTGCTGAGTTTTAGGGTC  149
       ||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  -CCCTGTCCATGCAGCAGAAGTCTGAAACAAA-TGCTGAGTTTAAGGGTC  146

seq1  TTCCTCATTGTACTGGCAGGTTTTGTGTGTCAACTTGACACAAGCTAGAG  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCTCATTGTACTGGCAAGTTTTGTGTGTCAACTTGACACAAGCTAGAG  196

seq1  TTATCACAGAGAAAGGAGCCTCCCTTGAGGAGCTGCCTCCTTGAGATTCA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATCACAGAGAAA-GAGCCTCCCTTGAGGAGCTGCCTCCTTGAGATTCA  245

seq1  GCTGTAAGGCATTTTCTCAAATAGTGATCAAGGCCGGAGGGCCTATTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGGCATTTTCTCAAATAGTGATCAAGGCCGGAGGGCCTATTGTG  295

seq1  GGTGGGACCATCTCTGGGCTGGTAGTCTTGTGTTCTATAAGAAAGCAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACCATCTCTGGGCTGGTAGTCTTGTGTTCTATAAGAAAGCAAGC  345

seq1  TGAGCAAGCCAGGACAAGCAAGCCAATAAGAAACATCCCTCCATGACCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCCAGGACAAGCAAGCCAATAAGAAACATCCCTCCATGACCTC  395

seq1  TGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCTTGACTTCCT  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTCCTGCTT-CTGACCTGCTTGAGTTCCAGTCTTGACTTCCT  444

seq1  TTGGTGATGAACAGCTGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATGAACAGCTGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCC  494

seq1  AACTTGTTTCTTGGTTGTGATGTTTGTGCAGGAATAGAAACCCTGACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTTCTTGGTTGTGATGTTTGTGCAGGAATAGAAACCCTGACTAA  544

seq1  GACACTTTTGTGGGTTCTGCTCTCCTGATCCCCATGCCCTCCTACCCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTTGTGGGTTCTGCTCTCCTGATCCCCATGCCCTCCTACCCAAG  594

seq1  AACTGATTTATTTTCATGTCTACCTTTTAATTTCTTCCACAATAAAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTATTTTCATGTCTACCTTTTAATTTCTTCCACAATAAAAGTA  644

seq1  GCTATGATGAAATTGTGCACACACTCAGGGTTTAAATAAGCCTATTCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATGAAATTGTGCACACACTCAGGGTTTAAATAAGCCTATTCTTC  694

seq1  TTTGTTGCAATCCCACTAAAGAGCACTATTCAATAACTACGTATAGTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCAATCCCACTAAAGAGCACTATTCAATAACTACGTATAGTATA  744

seq1  ATACAATAATCCCATTAAAGAACAATACTTAAATTTCTCTCCTTTCCCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAATCCCATTAAAGAACAATACTTAAATTTCTCTCCTTTCCCCA  794

seq1  AGTTGCCAGGTTCTTGATGTCAATGGACCTATTGAATCCTACCTTTCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGGTTCTTGATGTCAATGGACCTATTGAATCCTACCTTTCAAC  844

seq1  TCCAAGCTAAGAGGGTTTGCTCAAAGACTATAAATGTAACTTTTTCTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTAAGAGGGTTTGCTCAAAGACTATAAATGTAACTTTTTCTAAA  894

seq1  AGCCTGATTTTCATATTTCCCTCCCCAGCTTCTCCCATTTCAGCTTCCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATTTTCATATTTCCCTCCCCAGCTTCTCCCATTTCAGCTTCCCG  944

seq1  CCTCCAGAGCCTGAAACTGTTGAATGCCTTCCTTTCTCAAACTAGCTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGCCTGAAACTGTTGAATGCCTTCCTTTCTCAAACTAGCTGGC  994

seq1  CTTTTGTTCCACTTGTTTTTTATGAGCTACAGTTCTCCTTTCCTCCCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCACTTGTTTTTTATGAGCTACAGTTCTCCTTTCCTCCCTGG  1044

seq1  TGTGTAGAGGTGCTCATGAAGTGAGAATTGTGGAGAGGTGTTCTTTCTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGAGGTGCTCATGAAGTGAGAATTGTGGAGAGGTGTTCTTTCTTC  1094

seq1  CCACAGGCCTCCCTGTGGGCGGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  CCACAGGCCTCCCTGTGGGCGGGAATTC  1122