BAC Information

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BAC

Clone NameB6Ng01-121O12
Chromosome1 (Build37)
Map Location 180,297,795 - 180,436,616
singlet/doubletdoublet
Overlap geneEfcab2
Upstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu
Downstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121O12.bB6Ng01-121O12.g
ACCDH925470DH925471
length6331,100
definitionDH925470|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O12, 5' end.DH925471|Mus musculus domesticus DNA, BAC clone: B6Ng01-121O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,435,981 - 180,436,616)(180,297,795 - 180,298,905)
sequence
gaattctcaaactgccagtaatagccagaggcatgagttggtctctgcct
gcacgtctttgcccctgggctgtaggtgcctgaggtatattcaggatttt
cattggttgctaaagccttagatggtcacatctggggttctcactgctct
tcagaggatgctgcaggggtgaacttcaaagaccttcaggcatctgagcc
acctgctcatggatacttattgtgctctctctctctctctctctctctct
ctctctctctctctctctctctccttcgtttgcgattgacaaagagggtg
cgtcttagggggtcaacacatgtttcccatgcctgagggtccaggttcaa
tccctaacaattctcagaacaagcatgtataagggtcaagtggggtgggg
cacacctttactcccagcacttgggaggcagaggcaggtgaatttctgag
ttcaaggccagccagagcgacatagagaagccttatctcaaaagaccaaa
acaacaacaaacaaacaaacattcaccattacccacatcttcctagaaga
ggctgccctgcagtttcaacctctggcttttcccttcattttttctctta
ccgctttatgtctgatcgcagagtctttcagat
gaattctgtcttttcacttcatcccagtcttttctttgcttagagatagc
aacatagaagccattcccaggagtttagattgcactaggctgcacatatg
taaggactattgttcacagatagtctgttgtttggatgttccagggccta
gagagctcatgctgactgcatatacaaggttctctttgctttgccgtttg
gccaactgccctacagtctcccccattctccaaatgccccccccatcatc
tccattgtgcccccctgttcaagagattacctacaggtcttttatttacc
agaatgtccaagctctgcccttcagttgggacttaaaagttagataatgc
tgttggactttgctggggaagctttcggttgcagtatcagtgaccacggg
tctgtattaaatgtcactctggaataattattctcctctgagccgaaggt
aaacaaggagaggggtctgtcagctttcatcctgcacagctaagtaccct
ttggatttatctggtaaagctgagaaatctaagattgttcccggtgtctc
caacactagccccttaaaaaagaaaacagaaaagggcaaatccggggaat
ctcagaactttgtttttatttcatcactcagagggaacagtgactccgga
tttccatgagaatgacaaaagtgacggccaaggtcaggacacactgtaga
ttcatcttttcttaccaatttgtccggctgtgttagtaacccaaagagca
gaaaacgatgtgaattttattcttaggaatcaaataattttttttttcaa
attattttaagagcactattaggcctttcatgcattggaaaagaaagaga
gaaagataaaagaatccaccatgttttgaaatcttcctggtgctcatagg
caaaggtgcttgtgccaagtctaatgctgagttcgatccctagccctaca
cagtagaagagcaaatcgacttcaaaggctttctctgacctccaaactcc
tgtggcatgcccacctccctctcagtatagtgtatgcacggtatgtttct
taagtggaacagcagtactgattgattcaatatgctagctatgaactggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180435981_180436616
seq2: B6Ng01-121O12.b_48_680 (reverse)

seq1  ATCTGAAAGACTCTGCGATCAGACATAAAGCGGTAAGAGAAAAAGATGAA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCTGAAAGACTCTGCGATCAGACATAAAGCGGTAAGAGAAAAA-ATGAA  49

seq1  GGGAAATGCCTGAGGTTGAAACTGCAGGGCAGCCTCTTCTAGGAAGATGT  100
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGCCAGAGGTTGAAACTGCAGGGCAGCCTCTTCTAGGAAGATGT  99

seq1  GGGTAATGCTGATTGTTTGTTTGTTTGTTGTTGTTTTGGTCTTTTGAGAT  150
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGGTGAATGTTTGTTTGTTTGTTGTTGTTTTGGTCTTTTGAGAT  149

seq1  AAGGCTTCTCTATGTCGCTCTGGCTGGCCTTGAACTCAGAAATTCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCTCTATGTCGCTCTGGCTGGCCTTGAACTCAGAAATTCACCTG  199

seq1  CCTCTGCCTCCCAAGTGCTGGGAGTAAAGGTGTGCGCCACCACACTTGAC  250
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGGAGTAAAGGTGTGCCCCACCCCACTTGAC  249

seq1  CCTTATACATGCTTGTTCTGAGAATTGTTAGGGATTGAACCTGGAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTATACATGCTTGTTCTGAGAATTGTTAGGGATTGAACCTGGACCCTC  299

seq1  AGGCATGGGAAACATGTGCTGAACCCCTAAGCTGCACCCTCTTTGTGAAT  350
      |||||||||||||||||| ||| ||||||||  ||||||||||||| |||
seq2  AGGCATGGGAAACATGTGTTGACCCCCTAAGACGCACCCTCTTTGTCAAT  349

seq1  GGTAAATGTAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  400
       | ||| | ||  |||||||||||||||||||||||||||||||||||||
seq2  CGCAAACGAAG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  397

seq1  AGAGAGAGAGAGCACAATAAGTATCCATGAGCAGGTGGCTCAGATGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGCACAATAAGTATCCATGAGCAGGTGGCTCAGATGCCTG  447

seq1  AAGGTCTTTGAAGTTCACCCCTGCAGCATCCTCTGAAGAGCAGTGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTGAAGTTCACCCCTGCAGCATCCTCTGAAGAGCAGTGAGAAC  497

seq1  CCCAGATGTGACCATCTAAGGCTTTAGCAACCAATGAAAATCCTGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGTGACCATCTAAGGCTTTAGCAACCAATGAAAATCCTGAATAT  547

seq1  ACCTCAGGCACCTACAGCCCAGGGGCAAAGACGTGCAGGCAGAGACCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGCACCTACAGCCCAGGGGCAAAGACGTGCAGGCAGAGACCAAC  597

seq1  TCATGCCTCTGGCTATTACTGGCAGTTTGAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTCTGGCTATTACTGGCAGTTTGAGAATTC  633

seq1: chr1_180297795_180298905
seq2: B6Ng01-121O12.g_70_1169

seq1  GAATTCTGTCTTTTCACTTCATCCCAGTCTTTTCTTTGCTTAGAGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTTCACTTCATCCCAGTCTTTTCTTTGCTTAGAGATAGC  50

seq1  AACATAGAAGCCATTCCCAGGAGTTTAGATTGCACTAGGCTGCACATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAGCCATTCCCAGGAGTTTAGATTGCACTAGGCTGCACATATG  100

seq1  TAAGGACTATTGTTCACAGATAGTCTGTTGTTTGGATGTTCCAGGGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTATTGTTCACAGATAGTCTGTTGTTTGGATGTTCCAGGGCCTA  150

seq1  GAGAGCTCATGCTGACTGCATATACAAGGTTCTCTTTGCTTTGCCGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCATGCTGACTGCATATACAAGGTTCTCTTTGCTTTGCCGTTTG  200

seq1  GCCAACTGCCCTACAGTCTCCCCCATTCTCCAAATGCCCCCCCCATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGCCCTACAGTCTCCCCCATTCTCCAAATGCCCCCCCCATCATC  250

seq1  TCCATTGTGCCCCCCTGTTCAAGAGATTACCTACAGGTCTTTTATTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGCCCCCCTGTTCAAGAGATTACCTACAGGTCTTTTATTTACC  300

seq1  AGAATGTCCAAGCTCTGCCCTTCAGTTGGGACTTAAAAGTTAGATAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCCAAGCTCTGCCCTTCAGTTGGGACTTAAAAGTTAGATAATGC  350

seq1  TGTTGGACTTTGCTGGGGAAGCTTTCGGTTGCAGTATCAGTGACCACGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGACTTTGCTGGGGAAGCTTTCGGTTGCAGTATCAGTGACCACGGG  400

seq1  TCTGTATTAAATGTCACTCTGGAATAATTATTCTCCTCTGAGCCGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTAAATGTCACTCTGGAATAATTATTCTCCTCTGAGCCGAAGGT  450

seq1  AAACAAGGAGAGGGGTCTGTCAGCTTTCATCCTGCACAGCTAAGTACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGAGAGGGGTCTGTCAGCTTTCATCCTGCACAGCTAAGTACCCT  500

seq1  TTGGATTTATCTGGTAAAGCTGAGAAATCTAAGATTGTTCCCGGTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTATCTGGTAAAGCTGAGAAATCTAAGATTGTTCCCGGTGTCTC  550

seq1  CAACACTAGCCCCTTAAAAAAGAAAACAGAAAAGGGCAAATCCGGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAGCCCCTTAAAAAAGAAAACAGAAAAGGGCAAATCCGGGGAAT  600

seq1  CTCAGAACTTTGTTTTTATTTCATCACTCAGAGGGAACAGTGACTCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACTTTGTTTTTATTTCATCACTCAGAGGGAACAGTGACTCCGGA  650

seq1  TTTCCATGAGAATGACAAAAGTGACGGCCAAGGTCAGGACACACTGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGAGAATGACAAAAGTGACGGCCAAGGTCAGGACACACTGTAGA  700

seq1  TTCATCTTTTCTTACCAATTTGTCCGGCTGTGTTAGTAACCCAAAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTTCTTACCAATTTGTCCGGCTGTGTTAGTAACCCAAAGAGCA  750

seq1  GAAAACGATGTGAATTTTATTCTTAGGAATCAAATAATTTTTTTTTTCAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAACGATGTGAATTTTATTCTTAGGAATCAAATAATTTTTTTTTTC-A  799

seq1  AATTATTTTAAGAGCACTATTAGGCCTTTCATGCATTGGAAAAGAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTAAGAGCACTATTAGGCCTTTCATGCATTGGAAAAGAAAGAG  849

seq1  AGAAAGATAAAAGAATCCACCATGTTTTGAAATCTTCCTGGTGCTCATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAAGATAAAAGAATCCACCATGTTTTGAAATCTTCCTGGTGCTCATA-  898

seq1  GGCAAAGGTGCTTGTGCCAAGTCTAATGCTGAGTTCGATCCCTAGGCCCT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCAAAGGTGCTTGTGCCAAGTCTAATGCTGAGTTCGATCCCTA-GCCCT  947

seq1  ACACAGTAGAAGGAGCAAATCGACTTCAAAGGCTTTTCTCTGACCTCCAA  1000
      ||||||||||| ||||||||||||||||||||| |||||||||||||| |
seq2  ACACAGTAGAA-GAGCAAATCGACTTCAAAGGC-TTTCTCTGACCTCC-A  994

seq1  AACTCCTGTGGCATGCCCACCTCCCTCCCCAGTAATAGTGTATGCACGGT  1050
      |||||||||||||||||||||||||| | |||| ||||||||||||||||
seq2  AACTCCTGTGGCATGCCCACCTCCCT-CTCAGT-ATAGTGTATGCACGGT  1042

seq1  AGTGTTCTTAAGTGGAACAGCAGTACTGATTGATTCAATATGCTAGGCCC  1100
      |   ||||||||||||||||||||||||||||||||||||||||||   |
seq2  ATGTTTCTTAAGTGGAACAGCAGTACTGATTGATTCAATATGCTAG---C  1089

seq1  TATGGACTGGT  1111
      |||| ||||||
seq2  TATGAACTGGT  1100