BAC Information

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BAC

Clone NameB6Ng01-122B09
Chromosome1 (Build37)
Map Location 111,969,921 - 111,970,903
singlet/doubletsinglet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B09.bB6Ng01-122B09.g
ACCDH925606DH925607
length9891,182
definitionDH925606|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B09, 5' end.DH925607|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtcccgtcttccttggtgatgaacatgtgtaagctgaataaa
ccctttcctccctaatttgtttcttggtcatgatgttttgtccaggaata
gaaaccttgactaagacagagtgtttgtgactggtttgtatgtttgtgtg
tgtgtgtgtgtgtgtgtgtaggaaacagagacagagagagatagacagag
acagaaagactgagatagagaaagagcaataggggaaagagagaaataga
gacaaaatagagaaacagaaacattttctagggaggaagtcataaaattt
atatggctaaataagtcataaaatgtaaatatttcctttttattttgatt
tttgacatgacatgctattttctaagttccttttaatggccaattttaat
aaagttattttagtcatagattccacagtatttagtcattatattatgtg
cacaaaggtgaaaaggaacttttaaaagcaactcatgtggttcatgtctg
aatatttgttttttttctattgaaattgtgacatacaatccattcataca
cttagaacatgatttatttgacacactttttatatacaggtaaacatttc
taggtcatgagtaaggtttatgttcaagagcataaagcagaatacatgtt
tgaagggatgaattgtatctgcataaatgcaatacactttactatgtgat
ttaggacactaacaaagtgtgtatgtgtgctgaggatacaaagactttga
cattgattggtaaaacttaaaacaaacaaacaaacatggttcacaggtca
gacaaatacacagagaaggcaaatagttttattcttacagaatgaaaaac
ttcctcattgtctgggtgagaaaagagatgcatcagcagccactttactg
ggaagtgtgtgagttttgcttctatgttgcagactagtgcctagacttat
acaaaagaggtgggcctatgcatcctatagatatccttt
gaattctttgtttagctctgcaccccatttttaatagggttatttggttt
ttctgcagtccaacttcttgagttctctgtatatattggatattagccct
ctatttgatttttgattggtaaacaacctttcccaatctgttggttgtct
tttagtattattgacattctcttttgccttacagaagctttgcaattcat
gaagtcctatttgtcaattcttgatcttacacacaagccatttgtgatct
gttcatgaaaaactattctcatcaagaaaagaacctctggtggaatcacc
atccctgacctcaagtgatactaaagatcaattctgataaaaactgcatg
gtactggtacattgccagataggtaggtcaatggaatagaattgaagacc
cagaaatgaatccatatacctattatcacttgttctttgacaagggagct
aaaaccattgagtggaagaacacagcattttcaacaaatggtgctggctc
aactggtggttagcatatagaagaatgtaaattgatccattcgtatcttc
ttgtacaaaggttaagtctaagtgggtcaaggaactcactccacataaaa
gcagagacactgaatcttataaaggaaaaagtgaggaatagcctcaaaga
tatgggcacagggtttccccaatccattatctccatgtacaatgctcaag
tccaagtggatcaaggatctctatataaaaccagatacactgaatcttgt
agagaataaagtggggaagaacttcaaacacatggatacaagggaaattt
tccttaacaccaattccttgtgctctaagatcaagaatcaacaagtggga
ccttacaaaatttcaagtttctgtaaggcaaaggacactgtcaataggac
aaatggcaacacagcttggcaaatatttttattaatcctcatcaatagag
agctacatcgatatttacaagatctagagtacactcagagaaaaaatacc
ctatttaaaatgggaccggagctacaggatcttcactgagaactgattgc
agaagcacctatgaatgtcacaacagccttgtgataagaactggatcata
caagcattcatggagcggactcgtgacatcattcgattgagatgaatctg
cctcgtaagagcttgctgcaacatgaggacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111969921_111970903
seq2: B6Ng01-122B09.b_47_1029

seq1  GAATTCCAGTCCCGTCTTCCTTGGTGATGAACATGTGTAAGCTGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCCGTCTTCCTTGGTGATGAACATGTGTAAGCTGAATAAA  50

seq1  CCCTTTCCTCCCTAATTTGTTTCTTGGTCATGATGTTTTGTCCAGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTCCCTAATTTGTTTCTTGGTCATGATGTTTTGTCCAGGAATA  100

seq1  GAAACCTTGACTAAGACAGAGTGTTTGTGACTGGTTTGTATGTTTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGACTAAGACAGAGTGTTTGTGACTGGTTTGTATGTTTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTAGGAAACAGAGACAGAGAGAGATAGACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTAGGAAACAGAGACAGAGAGAGATAGACAGAG  200

seq1  ACAGAAAGACTGAGATAGAGAAAGAGCAATAGGGGAAAGAGAGAAATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGACTGAGATAGAGAAAGAGCAATAGGGGAAAGAGAGAAATAGA  250

seq1  GACAAAATAGAGAAACAGAAACATTTTCTAGGGAGGAAGTCATAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATAGAGAAACAGAAACATTTTCTAGGGAGGAAGTCATAAAATTT  300

seq1  ATATGGCTAAATAAGTCATAAAATGTAAATATTTCCTTTTTATTTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTAAATAAGTCATAAAATGTAAATATTTCCTTTTTATTTTGATT  350

seq1  TTTGACATGACATGCTATTTTCTAAGTTCCTTTTAATGGCCAATTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGACATGCTATTTTCTAAGTTCCTTTTAATGGCCAATTTTAAT  400

seq1  AAAGTTATTTTAGTCATAGATTCCACAGTATTTAGTCATTATATTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTTTAGTCATAGATTCCACAGTATTTAGTCATTATATTATGTG  450

seq1  CACAAAGGTGAAAAGGAACTTTTAAAAGCAACTCATGTGGTTCATGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGTGAAAAGGAACTTTTAAAAGCAACTCATGTGGTTCATGTCTG  500

seq1  AATATTTGTTTTTTTTCTATTGAAATTGTGACATACAATCCATTCATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGTTTTTTTTCTATTGAAATTGTGACATACAATCCATTCATACA  550

seq1  CTTAGAACATGATTTATTTGACACACTTTTTATATACAGGTAAACATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACATGATTTATTTGACACACTTTTTATATACAGGTAAACATTTC  600

seq1  TAGGTCATGAGTAAGGTTTATGTTCAAGAGCATAAAGCAGAATACATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGAGTAAGGTTTATGTTCAAGAGCATAAAGCAGAATACATGTT  650

seq1  TGAAGGGATGAATTGTATCTGCATAAATGCAATACAC-TTACTATGTGAT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAAGGGATGAATTGTATCTGCATAAATGCAATACACTTTACTATGTGAT  700

seq1  TTAGGACACTAACAAAGTGTGTATGTGTGCTGAGGATACAAAGACTTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACACTAACAAAGTGTGTATGTGTGCTGAGGATACAAAGACTTTGA  750

seq1  CATTGATTGGTAAAACTTAAAACAAACAAACAAACATGGTTCACAGGTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTGGTAAAACTTAAAACAAACAAACAAACATGGTTCACAGGTCA  800

seq1  GACAAATACACAGAGAAGGCAAATAGTTTTATTCTTACAGAATGAAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATACACAGAGAAGGCAAATAGTTTTATTCTTACAGAATGAAAAAC  850

seq1  TTCCTCATTGTCTGGGTGAGAAAAGAGATGCATCAGCAGCCAC-TTACTG  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCCTCATTGTCTGGGTGAGAAAAGAGATGCATCAGCAGCCACTTTACTG  900

seq1  GGAAGTGTGTGAGTTTTGCTTCTATGTTGCAGACTAGTGCCTAGACATAA  948
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  GGAAGTGTGTGAGTTTTGCTTCTATGTTGCAGACTAGTGCCTAGAC-TTA  949

seq1  TACAAAAGAGGCTGGGCATATGCATCCATTAGATA  983
      ||||||||||| ||||| |||||||||  ||||||
seq2  TACAAAAGAGG-TGGGCCTATGCATCCTATAGATA  983