BAC Information

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BAC

Clone NameB6Ng01-122B13
Chromosome1 (Build37)
Map Location 182,566,285 - 182,666,656
singlet/doubletdoublet
Overlap geneLin9, Mixl1, LOC666431, Acbd3
Upstream geneSccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1
Downstream geneH3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B13.bB6Ng01-122B13.g
ACCDH925614DH925615
length1,028251
definitionDH925614|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B13, 5' end.DH925615|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(182,566,285 - 182,567,061)(182,666,501 - 182,666,656)
sequence
gaattccaacaacttaggaaggtggggtttgtcctagaagggatttgtag
ggtctcagtccccacctcattctctcttctgccttgagatgagtgcctta
ttgtagcatcctcctatctatgtgctgtttcaccatagatacaaagccat
ggggtcaccccatcatggaccaaaacttccaaacctgtgagcctttttcc
tttataagttgattattttagagatttgtttagagagacagaaagctgat
taacaaaataggaaaacagggctttccctgtagcagttttattaccatct
agttcacacatatgtaattcacatgttgttttctacatggttttagcaga
ggtgcagctatgcagccaccactgcagtcttagaaccttcatcacaccca
aaagaaatcctgaacccttgactggttactcatttcccactcaagcctcc
cagctgccggactcgtctaatctcttctctttttatagatttgacaactc
tggacatttcccaaggatagaatcacacaatttgttcttttcagacaggc
ttctttcgatgagcaggtttttgtttgtttgttttttccatgagacaggg
tttctctgtgtagccctggctgtcctggaactcactttgtagaccaggct
ggccttgaactcagaaatccgcctcctgagtgctgggattaaaggcgtgc
gccaccacgcccggcttgttgagcaggttttaaaagttcatccacattgt
ggtgttcatcagtaaatttctttatttcttttttggatgattccattcca
tagataaattagtttttgttgttgttgttttgagtcagggtctcattatg
tagaccaggttatcctaaaactcagagatctgtctgcctctgcttcctac
ctgccagtactgggaaggtgtgtaccaccacacccagttgttgttgattt
ttaattaagctattgtgtgagggtagtgcaagagtcccgacaccttttga
ggccaccagagtgtgtcaatgttccttg
aaagccagcctggtctacctagcaagttttaggtcagccaaggctacaca
gagaaaccatggaggggggagggggctggggtattgaggaactaacaaca
tacatgaacacaccaagaataattactaagtggatgctttcgcagtcttt
aatgacaaaacaaaagcaagcaagaatcagataagagcaactttcaaaga
cattatatctgattcaacagtgtactatagtatataaatcaactttctac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182566285_182567061
seq2: B6Ng01-122B13.b_50_826

seq1  GAATTCCAACAACTTAGGAAGGTGGGGTTTGTCCTAGAAGGGATTTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAACTTAGGAAGGTGGGGTTTGTCCTAGAAGGGATTTGTAG  50

seq1  GGTCTCAGTCCCCACCTCATTCTCTCTTCTGCCTTGAGATGAGTGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGTCCCCACCTCATTCTCTCTTCTGCCTTGAGATGAGTGCCTTA  100

seq1  TTGTAGCATCCTCCTATCTATGTGCTGTTTCACCATAGATACAAAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCATCCTCCTATCTATGTGCTGTTTCACCATAGATACAAAGCCAT  150

seq1  GGGGTCACCCCATCATGGACCAAAACTTCCAAACCTGTGAGCCTTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCACCCCATCATGGACCAAAACTTCCAAACCTGTGAGCCTTTTTCC  200

seq1  TTTATAAGTTGATTATTTTAGAGATTTGTTTAGAGAGACAGAAAGCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTTGATTATTTTAGAGATTTGTTTAGAGAGACAGAAAGCTGAT  250

seq1  TAACAAAATAGGAAAACAGGGCTTTCCCTGTAGCAGTTTTATTACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATAGGAAAACAGGGCTTTCCCTGTAGCAGTTTTATTACCATCT  300

seq1  AGTTCACACATATGTAATTCACATGTTGTTTTCTACATGGTTTTAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACACATATGTAATTCACATGTTGTTTTCTACATGGTTTTAGCAGA  350

seq1  GGTGCAGCTATGCAGCCACCACTGCAGTCTTAGAACCTTCATCACACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGCTATGCAGCCACCACTGCAGTCTTAGAACCTTCATCACACCCA  400

seq1  AAAGAAATCCTGAACCCTTGACTGGTTACTCATTTCCCACTCAAGCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCCTGAACCCTTGACTGGTTACTCATTTCCCACTCAAGCCTCC  450

seq1  CAGCTGCCGGACTCGTCTAATCTCTTCTCTTTTTATAGATTTGACAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCGGACTCGTCTAATCTCTTCTCTTTTTATAGATTTGACAACTC  500

seq1  TGGACATTTCCCAAGGATAGAATCACACAATTTGTTCTTTTCAGACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTTCCCAAGGATAGAATCACACAATTTGTTCTTTTCAGACAGGC  550

seq1  TTCTTTCGATGAGCAGGTTTTTGTTTGTTTGTTTTTTCCATGAGACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCGATGAGCAGGTTTTTGTTTGTTTGTTTTTTCCATGAGACAGGG  600

seq1  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  650

seq1  GGCCTTGAACTCAGAAATCCGCCTCCTGAGTGCTGGGATTAAAGGCGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAACTCAGAAATCCGCCTCCTGAGTGCTGGGATTAAAGGCGTGC  700

seq1  GCCACCACGCCCGGCTTGTTGAGCAGGTTTTAAAAGTTCATCCACATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACGCCCGGCTTGTTGAGCAGGTTTTAAAAGTTCATCCACATTGT  750

seq1  GGTGTTCATCAGTAAATTTCTTTATTT  777
      |||||||||||||||||||||||||||
seq2  GGTGTTCATCAGTAAATTTCTTTATTT  777

seq1: chr1_182666501_182666656
seq2: B6Ng01-122B13.g_168_323 (reverse)

seq1  GTAGAAAGTTGATTTATATACTATAGTACACTGTTGAATCAGATATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGTTGATTTATATACTATAGTACACTGTTGAATCAGATATAATG  50

seq1  TCTTTGAAAGTTGCTCTTTTTTGATTCTTGCTTGCTTTTGTTTTGTCATT  100
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  TCTTTGAAAGTTGCTCTTATCTGATTCTTGCTTGCTTTTGTTTTGTCATT  100

seq1  AAAGACTGTGAAAGCATCCACTTAGTAATTATTCTTGGTGTAGTCATGTA  150
      |||||||| ||||||||||||||||||||||||||||||||  |||||||
seq2  AAAGACTGCGAAAGCATCCACTTAGTAATTATTCTTGGTGTGTTCATGTA  150

seq1  TGTTGT  156
      ||||||
seq2  TGTTGT  156