BAC Information

Click to search

BAC

Clone NameB6Ng01-122L13
Chromosome9 (Build37)1 (Build37)
Map Location 99,907,863 - 99,909,11917,077,178 - 17,077,272
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456
Downstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122L13.bB6Ng01-122L13.g
ACCDH926074DH926075
length1,249234
definitionDH926074|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L13, 5' end.DH926075|Mus musculus domesticus DNA, BAC clone: B6Ng01-122L13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,907,863 - 99,909,119)(17,077,178 - 17,077,272)
sequence
gaattcatgcctttataagaaattcattactgcgatagctggtctaatca
cactaatagcattgattcatgcttgaaagcagatccctcatgatataaag
ttctagtcacttcttaacagagtccgtctcttatctttgttacactggag
attatattttcactatatgaaattttgagtacattcaaatcctaacctaa
gctaagagtacatattagacaaaacaaacaacatcagatcctttagttct
gagtcccagaactaaactagaagccatctttatttcttcttctcaaaaca
gccttttaccactcagaaagtgtcttgtctcctcctagttctcatcccaa
acctttgttgaaatactgctgaaactggggttgctccatgcttagttctg
ggggtacactgggtgtatacagttgtgccaatgtagaaggtgtgcacccc
caccatctggctggttactggtgttctttgtttctttgaattattgtctg
gtgtcatgttttctatctggtgatgtctgtgttttgttttcagttttgaa
ggatgatttatttttactagacatagttatttttacgtgtatgaccattg
ataacgcccgccacgtcagtccatccgtgggtctctctgagttggtactc
cagtttcctgacttgaactctgtctcctttggtactttgtgtatattttt
tcaggatccactctggaccaagttgcattactagtactgcagctcctgaa
tggactactttagaaaactcatcggcttttatctttacttactcagcgat
gattcacaaatcaatatttcctgcttagcctatcggatctccccactagg
ctatggaaagcaccaccctgatcaacatgccaaaacagaagaataatctt
ttcccaagcactactttcctttagtattcacttcataatcatcaaattca
cacaattcagaatgcaggaaacaccatcaccatcctttatgcaacgctca
catctaagcaatcaggacccttctcagcaaaatcctattaatttccaatc
tgtcttttctttctgaatttctatccacctgcgagaactgtctttatgat
agaaatgtaaccacggctcctcctataaccctgccacattcctaatgcca
ccaggtcaatgccttgagctcccgtgtggggatgaactgactcacctcct
taaagtttgcctaaaccttatcgaatatgaccactatttgtgggagaaa
tccactaaagccatctggtcctggatgggtgattttttgttttgtttttt
gtttgtttgtttttgttttttgttttgttttgttttgttgttgttgtttt
tttggttgggagactattaatgactgcttctttttctttaggggttatgg
gactgtttagatggtttatctgatcctgttttaatttggcatcttgtatg
tgtctagaaaattgtccatttcattcagattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99907863_99909119
seq2: B6Ng01-122L13.b_48_1296

seq1  GAATTCATGCCTTTATAAGAAATTCATTACTGCGATAGCTGGTCTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTTTATAAGAAATTCATTACTGCGATAGCTGGTCTAATCA  50

seq1  CACTAATAGCATTGATTCATGCTTGAAAGCAGATCCCTCATGATATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAGCATTGATTCATGCTTGAAAGCAGATCCCTCATGATATAAAG  100

seq1  TTCTAGTCACTTCTTAACAGAGTCCGTCTCTTATCTTTGTTACACTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCACTTCTTAACAGAGTCCGTCTCTTATCTTTGTTACACTGGAG  150

seq1  ATTATATTTTCACTATATGAAATTTTGAGTACATTCAAATCCTAACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTTCACTATATGAAATTTTGAGTACATTCAAATCCTAACCTAA  200

seq1  GCTAAGAGTACATATTAGACAAAACAAACAACATCAGATCCTTTAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGTACATATTAGACAAAACAAACAACATCAGATCCTTTAGTTCT  250

seq1  GAGTCCCAGAACTAAACTAGAAGCCATCTTTATTTCTTCTTCTCAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAGAACTAAACTAGAAGCCATCTTTATTTCTTCTTCTCAAAACA  300

seq1  GCCTTTTACCACTCAGAAAGTGTCTTGTCTCCTCCTAGTTCTCATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTACCACTCAGAAAGTGTCTTGTCTCCTCCTAGTTCTCATCCCAA  350

seq1  ACCTTTGTTGAAATACTGCTGAAACTGGGGTTGCTCCATGCTTAGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTGAAATACTGCTGAAACTGGGGTTGCTCCATGCTTAGTTCTG  400

seq1  GGGGTACACTGGGTGTATACAGTTGTGCCAATGTAGAAGGTGTGCACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACACTGGGTGTATACAGTTGTGCCAATGTAGAAGGTGTGCACCCC  450

seq1  CACCATCTGGCTGGTTACTGGTGTTCTTTGTTTCTTTGAATTATTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTGGCTGGTTACTGGTGTTCTTTGTTTCTTTGAATTATTGTCTG  500

seq1  GTGTCATGTTTTCTATCTGGTGATGTCTGTGTTTTGTTTTCAGTTTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATGTTTTCTATCTGGTGATGTCTGTGTTTTGTTTTCAGTTTTGAA  550

seq1  GGATGATTTATTTTTACTAGACATAGTTATTTTTACGTGTATGACCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTATTTTTACTAGACATAGTTATTTTTACGTGTATGACCATTG  600

seq1  ATAACGCCCGCCACGTCAGTCCATCCGTGGGTCTCTCTGAGTTGGTACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGCCCGCCACGTCAGTCCATCCGTGGGTCTCTCTGAGTTGGTACTC  650

seq1  CAGTTTCCTGACTTGAACTCTGTCTCCTTTGGTACTTTGTGTATATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTGACTTGAACTCTGTCTCCTTTGGTACTTTGTGTATATTTTT  700

seq1  TCAGGATCCACTCTGGACCAAGTTGCATTACTAGTACTGCAGCTCCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCCACTCTGGACCAAGTTGCATTACTAGTACTGCAGCTCCTGAA  750

seq1  TGGACTACTTTAGAAAACTCATCGGCTTTTATCTTTACTTACTCAGCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTACTTTAGAAAACTCATCGGCTTTTATCTTTACTTACTCAGCGAT  800

seq1  GATTCACAAATCAATATTTCCTGCTTAGCCTATCGGATCTCCCCACTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAAATCAATATTTCCTGCTTAGCCTATCGGATCTCCCCACTAGG  850

seq1  CTATGGAAAGCACCACCCTGATCAACATGCCAAAACAGAAGAATAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAGCACCACCCTGATCAACATGCCAAAACAGAAGAATAATCTT  900

seq1  TTCCCAAGCACTACTTTCCTTTAGTATTCACTTCATAATCATCAAATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGCACTACTTTCCTTTAGTATTCACTTCATAATCATCAAATTCA  950

seq1  CACAATTCAGAAATGCAGGAAACACCATCACCATCCTTTATGCAACGCTC  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCAG-AATGCAGGAAACACCATCACCATCCTTTATGCAACGCTC  999

seq1  ACATCTAAGCAATCAGGACCC-TCTCAGCATAAATCCTATATATTTCTCA  1049
      ||||||||||||||||||||| |||||||| |||||||||  ||||| ||
seq2  ACATCTAAGCAATCAGGACCCTTCTCAGCA-AAATCCTATTAATTTC-CA  1047

seq1  ATCTGTCCTTTTCTTTCTGTATTTTCTATCACACTTGCCGAGACCTGTCT  1099
      |||||| |||||||||||| | |||||||| ||| || ||||| ||||||
seq2  ATCTGT-CTTTTCTTTCTG-AATTTCTATC-CACCTG-CGAGAACTGTCT  1093

seq1  TTATGATAGAAATGTAACCACGGCTTCTCCTAATAAACCCTGCGCAC-TT  1148
      ||||||||||||||||||||||||| ||||||   |||||||| ||| ||
seq2  TTATGATAGAAATGTAACCACGGCTCCTCCTA--TAACCCTGC-CACATT  1140

seq1  CCTAATGCCCACCA-GTCAATG-CTTGAGCTCCC-TGTGGGAGAGTGGAC  1195
      ||||||| |||||| ||||||| ||||||||||| |||||| || || ||
seq2  CCTAATG-CCACCAGGTCAATGCCTTGAGCTCCCGTGTGGG-GA-TGAAC  1187

seq1  AGTGACTCACCCTCCCTAGAAGTTTTGCCTAAAACTTA-CGAATATG-GC  1243
        ||||||| ||||| || ||| |||||||||| |||| ||||||||  |
seq2  --TGACTCA-CCTCCTTA-AAG-TTTGCCTAAACCTTATCGAATATGACC  1232

seq1  ACTATTT---GGAGAAA  1257
      |||||||   |||||||
seq2  ACTATTTGTGGGAGAAA  1249

seq1: chr1_17077178_17077272
seq2: B6Ng01-122L13.g_117_180 (reverse)

seq1  CCAACCAAAAAAACAAGATCCAATAATAACACCACCCCCGCAAACAAAAC  50
      |||||||||||||||| | |                      ||||||||
seq2  CCAACCAAAAAAACAACAAC----------------------AACAAAAC  28

seq1  AAAACAAAAAACCCAAAACAACAACAACAACAACAACAACAAAAA  95
      |||||||||    ||||| ||||| ||||  ||||  ||||||||
seq2  AAAACAAAA----CAAAA-AACAAAAACA--AACA--AACAAAAA  64