BAC Information

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BAC

Clone NameB6Ng01-122O19
Chromosome1 (Build37)
Map Location 134,662,529 - 134,816,415
singlet/doubletdoublet
Overlap geneLrrn2
Upstream geneSlc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream geneMdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122O19.bB6Ng01-122O19.g
ACCDH926228DH926229
length1,1531,152
definitionDH926228|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O19, 5' end.DH926229|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,815,255 - 134,816,415)(134,662,529 - 134,663,678)
sequence
gaattcatgtgcgatgagcttattttattgcttagttgcattggccactg
tcttagcctacttggacacaatcactaagttccataaaccggaaagttta
taaagaacagaattgatttcttggagctgggtagtctaagatgaaggcat
cggcagatggcgttgaggagttgaaggctaccctctctccgtgcttgcaa
gtatagagcgggtcaagcggttctggggcttttacacaagcagttaccca
cctgtgatctaattgtgtccaaatggtaacatcttgcaaattacgtttcg
gcacttgggacaatgggcacaactacccagttacagcagtgcaggaagcc
ttggcaaaacatgccctggacatgcttctcctctcccagcatgctccaga
gctgcagccctcggggctggctacaaggctttccactgtggttgtgagac
gcctctctctcccccttccctaccgttgagaccctggggcttccacatag
ttgcttctttgtcccacagctttgggcaccaagtgacaccctgagcagtc
tccaggtgagttatgagacaggacagagaagctgccacagaggaaaagcc
aagtggccaagtgggagggagccagtccacagcactgtacaggtcttccc
agaaaatagcgacatttggcagtttggtttgtgtggaaatccagaccaca
gtcaatcttaccaaggtacaattcccttgcttatagaatgagcatgtgag
ttacctaccttgaatgctgataggtgccatttatcaaaagcttacagtgt
attgggcctttataaagtttgaaaaaaatttactctgtgtgtgtgtgtcc
tctgagccaggaaagggcgctgggtcccctagagttatagtcatctgaca
tgggtgttgatgtggacagtgtcagcatgttttctcaggaatgaacaagg
gactgttctcccagtataataattaaaatcctaatatgaacacctacagc
ttctatgttctccagtgcctctcctcagacttcaaactctgggcagccaa
taaccaacttgcttatagtcatacagcaaggcctagaatggcctaggtat
gtcggactttgttctccctcattgggagaagtacgggtgcctaagggaac
agc
gaattctttccattctctggttggtgtacagccagtagcatcggggcggg
gcttctgaagagctcccttcaaaggctgatggattgattgtcagagtgcg
tggtggcagctgccagcgaagcctccctgcaaatggaaacactcagctct
gcagtgaagggcaggcttccaggatgctctaagaggctgagagccccctt
cttgcttgcagacacagctctcctgcccaggaacccctcctcacgtaaaa
atgcgtcttgtgcagagagcccgcccgctcaaagctccaggaatcctgta
agccactgcattagttgcacgtcataaatatttatgccctgctgatgtgt
gtgccgagcactgggcagggctactgagggacagaggccagctcagagag
aggcagggagaagcagggtttcagcccccttttgctgttggcattccaag
atgtggtcagtaagcttccgttctggctgctccagctgctgagtggccgg
cactgggacatggagtaggagttctggacaggtggaaaaaggaagtctgc
agctacttgagctcacgccaaagcccagttctgcgattccaggggctaga
aatggcagcgtggtttatagttatctgacacagaggcccatgattccagc
ctgtgtgccccgttccaaaaaaaaaaaaaaagtgtgtccagagcttcata
gtcaaagcagaaggcaagtgccagccttcaccacaggagcccatagcaac
ctttccccaacccacataggagagatttgcccatgtgtggatccacagcc
atagacgagtgagctgggattcaaactcaagctcttggctctcagatttg
tgcattccctgacagctgcctggtcccatgagctccacacatcacagata
tggacaggcttcagacctgtcttccaggcccttttctcagactggatatc
tggggcgctttggagatggtgtcggggtacgcacctgttgtgggcagaaa
gggaacatcacaggatctgacccctgactggggaacaaggagcctcattg
gaaggggtctggagcccatgggacagggccttaagccaggtcaattaaat
aggtgggtggaccctcagggattgttctctaactctcctggcctacacat
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134815255_134816415
seq2: B6Ng01-122O19.b_50_1202 (reverse)

seq1  GCTGGTCCC-TAGGCACCCGTGCTTCTCTCCCAACTGGAGGAG-ACAAAG  48
      |||| |||| ||||||||||| ||  |||||||| ||  |||| ||||||
seq2  GCTGTTCCCTTAGGCACCCGTACT--TCTCCCAA-TGAGGGAGAACAAAG  47

seq1  TCTGGCCATACCTAAGCCATTCTAGGCCCTGCTGTATGACTATAAGCCAG  98
      ||  | |||||||| ||||||||||||| |||||||||||||||||| ||
seq2  TC-CGACATACCTAGGCCATTCTAGGCCTTGCTGTATGACTATAAGCAAG  96

seq1  TTGGTTTATTGGCTGCCCAGAGTTTTGAGGTCTGGAGGAGAGGCACTGGA  148
      |||| ||||||||||||||||| ||||| |||| ||||||||||||||||
seq2  TTGG-TTATTGGCTGCCCAGAG-TTTGAAGTCT-GAGGAGAGGCACTGGA  143

seq1  G-ACATAGAAGCTGTAGGTGTTCATTATTAGGATTTTAATTATTATTACT  197
      | |||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  GAACATAGAAGCTGTAGGTGTTCA-TATTAGGATTTTAATTATTA-TACT  191

seq1  GGGAGAACAGTCCCCTTGTTCATTCCCTGAGAAAACATGCTGACACTGTC  247
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GGGAGAACAGT-CCCTTGTTCATT-CCTGAGAAAACATGCTGACACTGTC  239

seq1  CACATCAACACCCATGTCAGATGACTATAACTCTAGGGGACCCAGCGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAACACCCATGTCAGATGACTATAACTCTAGGGGACCCAGCGCCC  289

seq1  TTTCCTGGCTCAGAGGACACACACACACAGAGTAAATTTTTTTCAAACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCTCAGAGGACACACACACACAGAGTAAATTTTTTTCAAACTT  339

seq1  TATAAAGGCCCAATACACTGTAAGCTTTTGATAAATGGCACCTATCAGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGCCCAATACACTGTAAGCTTTTGATAAATGGCACCTATCAGCA  389

seq1  TTCAAGGTAGGTAACTCACATGCTCATTCTATAAGCAAGGGAATTGTACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTAGGTAACTCACATGCTCATTCTATAAGCAAGGGAATTGTACC  439

seq1  TTGGTAAGATTGACTGTGGTCTGGATTTCCACACAAACCAAACTGCCAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGATTGACTGTGGTCTGGATTTCCACACAAACCAAACTGCCAAA  489

seq1  TGTCGCTATTTTCTGGGAAGACCTGTACAGTGCTGTGGACTGGCTCCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTATTTTCTGGGAAGACCTGTACAGTGCTGTGGACTGGCTCCCTC  539

seq1  CCACTTGGCCACTTGGCTTTTCCTCTGTGGCAGCTTCTCTGTCCTGTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGCCACTTGGCTTTTCCTCTGTGGCAGCTTCTCTGTCCTGTCTC  589

seq1  ATAACTCACCTGGAGACTGCTCAGGGTGTCACTTGGTGCCCAAAGCTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCACCTGGAGACTGCTCAGGGTGTCACTTGGTGCCCAAAGCTGTG  639

seq1  GGACAAAGAAGCAACTATGTGGAAGCCCCAGGGTCTCAACGGTAGGGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAGAAGCAACTATGTGGAAGCCCCAGGGTCTCAACGGTAGGGAAG  689

seq1  GGGGAGAGAGAGGCGTCTCACAACCACAGTGGAAAGCCTTGTAGCCAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGAGAGGCGTCTCACAACCACAGTGGAAAGCCTTGTAGCCAGCC  739

seq1  CCGAGGGCTGCAGCTCTGGAGCATGCTGGGAGAGGAGAAGCATGTCCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGCTGCAGCTCTGGAGCATGCTGGGAGAGGAGAAGCATGTCCAGG  789

seq1  GCATGTTTTGCCAAGGCTTCCTGCACTGCTGTAACTGGGTAGTTGTGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTGCCAAGGCTTCCTGCACTGCTGTAACTGGGTAGTTGTGCCC  839

seq1  ATTGTCCCAAGTGCCGAAACGTAATTTGCAAGATGTTACCATTTGGACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCAAGTGCCGAAACGTAATTTGCAAGATGTTACCATTTGGACAC  889

seq1  AATTAGATCACAGGTGGGTAACTGCTTGTGTAAAAGCCCCAGAACCGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATCACAGGTGGGTAACTGCTTGTGTAAAAGCCCCAGAACCGCTT  939

seq1  GACCCGCTCTATACTTGCAAGCACGGAGAGAGGGTAGCCTTCAACTCCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGCTCTATACTTGCAAGCACGGAGAGAGGGTAGCCTTCAACTCCTC  989

seq1  AACGCCATCTGCCGATGCCTTCATCTTAGACTACCCAGCTCCAAGAAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCATCTGCCGATGCCTTCATCTTAGACTACCCAGCTCCAAGAAATC  1039

seq1  AATTCTGTTCTTTATAAACTTTCCGGTTTATGGAACTTAGTGATTGTGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTCTTTATAAACTTTCCGGTTTATGGAACTTAGTGATTGTGTC  1089

seq1  CAAGTAGGCTAAGACAGTGGCCAATGCAACTAAGCAATAAAATAAGCTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGGCTAAGACAGTGGCCAATGCAACTAAGCAATAAAATAAGCTCA  1139

seq1  TCGCACATGAATTC  1161
      ||||||||||||||
seq2  TCGCACATGAATTC  1153

seq1: chr1_134662529_134663678
seq2: B6Ng01-122O19.g_69_1220

seq1  GAATTCTTTCCATTCTCTGGTTGGTGTACAGCCAGTAGCATCGGGGCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCATTCTCTGGTTGGTGTACAGCCAGTAGCATCGGGGCGGG  50

seq1  GCTTCTGAAGAGCTCCCTTCAAAGGCTGATGGATTGATTGTCAGAGTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAAGAGCTCCCTTCAAAGGCTGATGGATTGATTGTCAGAGTGCG  100

seq1  TGGTGGCAGCTGCCAGCGAAGCCTCCCTGCAAATGGAAACACTCAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGCTGCCAGCGAAGCCTCCCTGCAAATGGAAACACTCAGCTCT  150

seq1  GCAGTGAAGGGCAGGCTTCCAGGATGCTCTAAGAGGCTGAGAGCCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAAGGGCAGGCTTCCAGGATGCTCTAAGAGGCTGAGAGCCCCCTT  200

seq1  CTTGCTTGCAGACACAGCTCTCCTGCCCAGGAACCCCTCCTCACGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGCAGACACAGCTCTCCTGCCCAGGAACCCCTCCTCACGTAAAA  250

seq1  ATGCGTCTTGTGCAGAGAGCCCGCCCGCTCAAAGCTCCAGGAATCCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTCTTGTGCAGAGAGCCCGCCCGCTCAAAGCTCCAGGAATCCTGTA  300

seq1  AGCCACTGCATTAGTTGCACGTCATAAATATTTATGCCCTGCTGATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGCATTAGTTGCACGTCATAAATATTTATGCCCTGCTGATGTGT  350

seq1  GTGCCGAGCACTGGGCAGGGCTACTGAGGGACAGAGGCCAGCTCAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGAGCACTGGGCAGGGCTACTGAGGGACAGAGGCCAGCTCAGAGAG  400

seq1  AGGCAGGGAGAAGCAGGGTTTCAGCCCCCTTTTGCTGTTGGCATTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGAGAAGCAGGGTTTCAGCCCCCTTTTGCTGTTGGCATTCCAAG  450

seq1  ATGTGGTCAGTAAGCTTCCGTTCTGGCTGCTCCAGCTGCTGAGTGGCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCAGTAAGCTTCCGTTCTGGCTGCTCCAGCTGCTGAGTGGCCGG  500

seq1  CACTGGGACATGGAGTAGGAGTTCTGGACAGGTGGAAAAAGGAAGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGACATGGAGTAGGAGTTCTGGACAGGTGGAAAAAGGAAGTCTGC  550

seq1  AGCTACTTGAGCTCACGCCAAAGCCCAGTTCTGCGATTCCAGGGGCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTGAGCTCACGCCAAAGCCCAGTTCTGCGATTCCAGGGGCTAGA  600

seq1  AATGGCAGCGTGGTTTATAGTTATCTGACACAGAGGCCCATGATTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGCGTGGTTTATAGTTATCTGACACAGAGGCCCATGATTCCAGC  650

seq1  CTGTGTGCCCCGTTCC-AAAAAAAAAAAAAAGTGTGTCCAGAGCTTCATA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCCCGTTCCAAAAAAAAAAAAAAAGTGTGTCCAGAGCTTCATA  700

seq1  GTCAAAGCAGAAGGCAAGTGCCAGCCTTCACCACAGGAGCCCATAGCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCAGAAGGCAAGTGCCAGCCTTCACCACAGGAGCCCATAGCAAC  750

seq1  CTTTCCCCAACCCACATAGGAGAGATTTGCCCATGTGTGGATCCACAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAACCCACATAGGAGAGATTTGCCCATGTGTGGATCCACAGCC  800

seq1  ATAGACGAGTGAGCTGGGATTCAAACTCAAGCTCTTGGCTCTCAGATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACGAGTGAGCTGGGATTCAAACTCAAGCTCTTGGCTCTCAGATTTG  850

seq1  TGCATTCCCTGACAAGCTGCCTGGTCCCATGAGCTCCACACATCACAGAT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCCTGAC-AGCTGCCTGGTCCCATGAGCTCCACACATCACAGAT  899

seq1  ATTGACAAGGCTTCAAGACCTGTCTTCCAGGCCCTTTTCTCAGACTGGAT  949
      || ||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGGAC-AGGCTTC-AGACCTGTCTTCCAGGCCCTTTTCTCAGACTGGAT  947

seq1  ATCT-GAGCGCTTTGAAGATGGTGTCGGGGGTACGGCAACCTG-TGTGTG  997
      |||| | |||||||| |||||||||| ||||||||   ||||| |||| |
seq2  ATCTGGGGCGCTTTGGAGATGGTGTC-GGGGTACG--CACCTGTTGTGGG  994

seq1  CAGAAA-GGAACATCACAAGATCTGACACCCTGACT-GGGAACAA-GAG-  1043
      |||||| ||||||||||| |||||||| |||||||| |||||||| ||| 
seq2  CAGAAAGGGAACATCACAGGATCTGAC-CCCTGACTGGGGAACAAGGAGC  1043

seq1  CTCATTTGGAGGGGTCT-GAGCCAAT-GGACAGAGCCCTAGAGCAAAGGT  1091
      |||||| | |||||||| ||||| || |||||| ||| || |||  ||||
seq2  CTCATTGGAAGGGGTCTGGAGCCCATGGGACAGGGCCTTA-AGC-CAGGT  1091

seq1  C-ATATAATATGT-GGTAGACCCTCAAGGATTGTTCTTCTAACTCTCCT-  1138
      | ||  |||| || ||| |||||||| ||||||||| |||||||||||| 
seq2  CAATTAAATAGGTGGGTGGACCCTCAGGGATTGTTC-TCTAACTCTCCTG  1140

seq1  GCCTACACATGG  1150
      ||||||||||||
seq2  GCCTACACATGG  1152