BAC Information

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BAC

Clone NameB6Ng01-123B23
Chromosome1 (Build37)
Map Location 13,921,482 - 14,046,555
singlet/doubletdoublet
Overlap geneLOC100039869
Upstream geneSlco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859
Downstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123B23.bB6Ng01-123B23.g
ACCDH926377DH926378
length1,1351,074
definitionDH926377|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B23, 5' end.DH926378|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,045,417 - 14,046,555)(13,921,482 - 13,922,575)
sequence
gaattccatacttcacagtagaatgtaactctaatctactcataaataga
actcatatgttatcattcccaaaggtagcagattatctccaaaatcagta
aaattttatttgttcctgaggtgtttcttccctaatgaaggcaataaatg
gtattcccatcttttagaaaaatatacggtcaatgcccaattttctttct
tccacccattaatcccatagccaactcacactaattacaattaacatctg
aacattattgaatttcacacatgaatgtaaggaagtaacaactggctatg
acatcaccttctattctgatattttaataagtagatgcattttaattatt
tatggtatatcataacatgccagtaaatgctttctaatgctttttgtaaa
ggcaatgaagtcttgataattttataactatcagtccttgctattaagtt
gttcactagaaatgtaaagtgataccactgattgaattatgagaattaga
tctttggatctgcaatattggagccattgcaaggttactatttctgtaac
taattatcctaggaagcacttcattttgtcctgtgttgatgtcattactt
ttacattgctccttagaaggagcttcttttctgaacatttgctatcagta
aaagcctattttatattcattgcagtgactcacattttgggaaagatgct
aactctcaatgtgccagtaatggattgggtcactttggatcaataatttc
aattgtctaagctcttgccattcagagtatagtttgagcctaggttctta
ttggtgtcggacattggtcacccaaataagtgactgttacattgtggagc
acagggcattctgacttcttgcttacagccctgtggttggggaattcttg
cctacccttcctgatgcccctgacttgatcccccagctcattcttagaca
ctcactcttgcctgccttatatgcttctatgaccagcccaaggtccattt
attctctttttctggaacctccttttccaatcagacctttcagggaaccc
ctcattttggccccatcttgtggagtggaagaaagatctgatgaaaaaaa
acaaaacccaaactacccagcattctgtggagttt
gaattcactgatgttacaaatttgtggaaggatgttatccattaaggtga
aagcagaaaggggctataaagttgactcaaagctgagcactttaccttca
gggaagcacatataaaagtctgtcttgaactgtatatatagtaacagtta
aagctttgaacacctggttcttaactgagcaggcacagccatataaaata
ctgacataccttctatttgctgttattttgatggctgggcaggctgctat
tttttttttttttatttcttttgaatgtgcttaggaatttagcgttagta
atcagtcagctcagaatgcatttatttattgagtgccaaccatgtgctgg
cgtaaacttagtgtctagactagagttcttatttacactggttgaatcgt
tggagtgattaaatgatggttccatttaatagttatcaccaatcttgttc
agagagttgagaaatagacgaattttccagacttcaaaatcaagatgcag
ctttcctggttaagtttggtgacctggctggaagcataaagccaaggttt
aattcctagataccaaaagtcactgaaaaaaattttttgtactgtaagat
gtctctctcacagtgccctgtttcttaacttgccagccatattacaaaag
gaagaccgtgttctggctcattcttgtaatcccagtgctgtaggtcactg
agtgtgctggccaaccagtctagccaaatttgtgaattccaggtcagtga
gagaccttgtcttcaaagaaaaaaagacagaaggtacctatggatgacac
caaggctgacctctgttcttcatgcaacccaagcacggtgcacacattaa
acccccaccgccatatgcacacttcacacacatggacacatacacacact
tagagtgtcatgctgtgtgacattctatacatcatcattttatccatggt
agcagtaaacatgtttcctgactggttatttggctatgactctgctaccc
tcagatttcagtgatgggctgatatgctgactcacagtggcccctcctcc
ccactgctctatgcaccccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14045417_14046555
seq2: B6Ng01-123B23.b_46_1180 (reverse)

seq1  AAACTCACAAGAATGCTTGTGTATGTTTGTGTTTTGTTTTTTTTCATCAG  50
      ||||||   ||||||| || ||| ||||| ||||||||||||||||||||
seq2  AAACTCCACAGAATGC-TGGGTA-GTTTGGGTTTTGTTTTTTTTCATCAG  48

seq1  ATCTTCTTCCCACTCCACAAGATGGGGGCCAAAATGAGTGGTTTCCCTGA  100
      |||||  | |||||||||||||| |||||||||||||| || ||||||||
seq2  ATCTTTCTTCCACTCCACAAGAT-GGGGCCAAAATGAG-GGGTTCCCTGA  96

seq1  GAGGTCTGATTGGAAAAGGAGGTTCCAG-AATAGAGAATAAATGGACCTT  149
       ||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  AAGGTCTGATTGGAAAAGGAGGTTCCAGAAAAAGAGAATAAATGGACCTT  146

seq1  GGGCTGGTCATAGAAGCATATTAAGGCAGGCAAGAGTGAGTGTCTAAGAA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGCTGGTCATAGAAGCATA-TAAGGCAGGCAAGAGTGAGTGTCTAAGAA  195

seq1  TGAGCTGGGGGATCAAGTCAGGGGCATCAGGAAGGGTAGGCAAGAATTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGGGGATCAAGTCAGGGGCATCAGGAAGGGTAGGCAAGAATTCC  245

seq1  CCAACCACAGGGCTGTAAGCAAGAAGTCAGAATGCCCTGTGCTCCACAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACAGGGCTGTAAGCAAGAAGTCAGAATGCCCTGTGCTCCACAAT  295

seq1  GTAACAGTCACTTATTTGGGTGACCAATGTCCGACACCAATAAGAACCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTCACTTATTTGGGTGACCAATGTCCGACACCAATAAGAACCTA  345

seq1  GGCTCAAACTATACTCTGAATGGCAAGAGCTTAGACAATTGAAATTATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAACTATACTCTGAATGGCAAGAGCTTAGACAATTGAAATTATTG  395

seq1  ATCCAAAGTGACCCAATCCATTACTGGCACATTGAGAGTTAGCATCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGTGACCCAATCCATTACTGGCACATTGAGAGTTAGCATCTTTC  445

seq1  CCAAAATGTGAGTCACTGCAATGAATATAAAATAGGCTTTTACTGATAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTGAGTCACTGCAATGAATATAAAATAGGCTTTTACTGATAGC  495

seq1  AAATGTTCAGAAAAGAAGCTCCTTCTAAGGAGCAATGTAAAAGTAATGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCAGAAAAGAAGCTCCTTCTAAGGAGCAATGTAAAAGTAATGAC  545

seq1  ATCAACACAGGACAAAATGAAGTGCTTCCTAGGATAATTAGTTACAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACAGGACAAAATGAAGTGCTTCCTAGGATAATTAGTTACAGAAA  595

seq1  TAGTAACCTTGCAATGGCTCCAATATTGCAGATCCAAAGATCTAATTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCTTGCAATGGCTCCAATATTGCAGATCCAAAGATCTAATTCTC  645

seq1  ATAATTCAATCAGTGGTATCACTTTACATTTCTAGTGAACAACTTAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAATCAGTGGTATCACTTTACATTTCTAGTGAACAACTTAATAG  695

seq1  CAAGGACTGATAGTTATAAAATTATCAAGACTTCATTGCCTTTACAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTGATAGTTATAAAATTATCAAGACTTCATTGCCTTTACAAAAA  745

seq1  GCATTAGAAAGCATTTACTGGCATGTTATGATATACCATAAATAATTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGAAAGCATTTACTGGCATGTTATGATATACCATAAATAATTAAA  795

seq1  ATGCATCTACTTATTAAAATATCAGAATAGAAGGTGATGTCATAGCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTACTTATTAAAATATCAGAATAGAAGGTGATGTCATAGCCAGT  845

seq1  TGTTACTTCCTTACATTCATGTGTGAAATTCAATAATGTTCAGATGTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTCCTTACATTCATGTGTGAAATTCAATAATGTTCAGATGTTAA  895

seq1  TTGTAATTAGTGTGAGTTGGCTATGGGATTAATGGGTGGAAGAAAGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTAGTGTGAGTTGGCTATGGGATTAATGGGTGGAAGAAAGAAAA  945

seq1  TTGGGCATTGACCGTATATTTTTCTAAAAGATGGGAATACCATTTATTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTGACCGTATATTTTTCTAAAAGATGGGAATACCATTTATTGC  995

seq1  CTTCATTAGGGAAGAAACACCTCAGGAACAAATAAAATTTTACTGATTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAGGGAAGAAACACCTCAGGAACAAATAAAATTTTACTGATTTT  1045

seq1  GGAGATAATCTGCTACCTTTGGGAATGATAACATATGAGTTCTATTTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAATCTGCTACCTTTGGGAATGATAACATATGAGTTCTATTTATG  1095

seq1  AGTAGATTAGAGTTACATTCTACTGTGAAGTATGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTAGAGTTACATTCTACTGTGAAGTATGGAATTC  1135

seq1: chr1_13921482_13922575
seq2: B6Ng01-123B23.g_68_1141

seq1  GAATTCACTGATGTTACAAATTTGTGGAAGGATGTTATCCATTAAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATGTTACAAATTTGTGGAAGGATGTTATCCATTAAGGTGA  50

seq1  AAGCAGAAAGGGGCTATAAAGTTGACTCAAAGCTGAGCACTTTACCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAGGGGCTATAAAGTTGACTCAAAGCTGAGCACTTTACCTTCA  100

seq1  GGGAAGCACATATAAAAGTCTGTCTTGAACTGTATATATAGTAACAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACATATAAAAGTCTGTCTTGAACTGTATATATAGTAACAGTTA  150

seq1  AAGCTTTGAACACCTGGTTCTTAACTGAGCAGGCACAGCCATATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGAACACCTGGTTCTTAACTGAGCAGGCACAGCCATATAAAATA  200

seq1  CTGACATACCTTCTATTTGCTGTTATTTTGATGGCTGGGCAGGCTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATACCTTCTATTTGCTGTTATTTTGATGGCTGGGCAGGCTGCTAT  250

seq1  TTTTTTTTTTTTTATTTCTTTTGAATGTGCTTAGGAATTTAGCGTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTATTTCTTTTGAATGTGCTTAGGAATTTAGCGTTAGTA  300

seq1  ATCAGTCAGCTCAGAATGCATTTATTTATTGAGTGCCAACCATGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGCTCAGAATGCATTTATTTATTGAGTGCCAACCATGTGCTGG  350

seq1  CGTAAACTTAGTGTCTAGACTAGAGTTCTTATTTACACTGGTTGAATCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAACTTAGTGTCTAGACTAGAGTTCTTATTTACACTGGTTGAATCGT  400

seq1  TGGAGTGATTAAATGATGGTTCCATTTAATAGTTATCACCAATCTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGATTAAATGATGGTTCCATTTAATAGTTATCACCAATCTTGTTC  450

seq1  AGAGAGTTGAGAAATAGACGAATTTTCCAGACTTCAAAATCAAGATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGAGAAATAGACGAATTTTCCAGACTTCAAAATCAAGATGCAG  500

seq1  CTTTCCTGGTTAAGTTTGGTGACCTGGCTGGAAGCATAAAGCCAAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGTTAAGTTTGGTGACCTGGCTGGAAGCATAAAGCCAAGGTTT  550

seq1  AATTCCTAGATACCAAAAGTCACTGAAAAAAATTTTTTGTACTGTAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGATACCAAAAGTCACTGAAAAAAATTTTTTGTACTGTAAGAT  600

seq1  GTCTCTCTCACAGTGCCCTGTTTCTTAACTTGCCAGCCATATTACAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCACAGTGCCCTGTTTCTTAACTTGCCAGCCATATTACAAAAG  650

seq1  GAAGACCGTGTTCTGGCTCATTCTTGTAATCCCAGTGCTGTAGGTCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCGTGTTCTGGCTCATTCTTGTAATCCCAGTGCTGTAGGTCACTG  700

seq1  AGTGTGCTGGCCAACCAGTCTAGCCAAATTTGTGAATTCCAGGTCAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTGGCCAACCAGTCTAGCCAAATTTGTGAATTCCAGGTCAGTGA  750

seq1  GAGACCTTGTCTCCAAAGAAAAAAAGACAGAAGGTACCTATGGATGACAC  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGTCTTCAAAGAAAAAAAGACAGAAGGTACCTATGGATGACAC  800

seq1  CAAGGCTGACCTCTGTTCTTCATGCAACCCAAGCAC-GTGCACACATTAA  849
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  CAAGGCTGACCTCTGTTCTTCATGCAACCCAAGCACGGTGCACACATT-A  849

seq1  AACCCCCACCGCCATATGCACACTTCACACACATGGACACATACACACAA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACCCCCACCGCCATATGCACACTTCACACACATGGACACATACACAC-A  898

seq1  CTTAGAGTTGTCATGCTGTGTGACAATTCTATAACATCATCATTTTTAAT  949
      ||||||| |||||||||||||||| ||||||| |||||||||||||  ||
seq2  CTTAGAG-TGTCATGCTGTGTGAC-ATTCTAT-ACATCATCATTTT--AT  943

seq1  CCAATGGTTAGCAGTAAACATTGTTTTCTGACTGAGTTATTTTGGCTATG  999
      || |||| |||||||||||| ||||| ||||||| |||| ||||||||||
seq2  CC-ATGG-TAGCAGTAAACA-TGTTTCCTGACTG-GTTA-TTTGGCTATG  988

seq1  ACATCTGCTA-CCTCAGATATCAGGTTGATTGGGCTGATATGGCTGACTC  1048
      || ||||||| |||||||| ||||  ||| ||||||||||| ||||||||
seq2  AC-TCTGCTACCCTCAGATTTCAG--TGA-TGGGCTGATAT-GCTGACTC  1033

seq1  AACAGTGGCCCCTTCCTCCCCCCACTGCTCTATGCACACCCCTCCC  1094
       ||||||||||| ||||  |||||||||||||||||| ||||||||
seq2  -ACAGTGGCCCC-TCCT--CCCCACTGCTCTATGCAC-CCCCTCCC  1074