BAC Information

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BAC

Clone NameB6Ng01-123C04
Chromosome1 (Build37)7 (Build37)
Map Location 185,521,286 - 185,521,733127,827,111 - 127,827,830
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCapn8, 4922505E12Rik, Susd4, Tlr5, EG666649
Downstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C04.bB6Ng01-123C04.g
ACCDH926387DH926388
length623969
definitionDH926387|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C04, 5' end.DH926388|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(185,521,286 - 185,521,733)(127,827,111 - 127,827,830)
sequence
gaattcaataaatataaagaagaaacaaggtaatacctcattaaacttca
agagtataacaataaatacctgagtgatgtccaagaagctataaatatac
tcatatacaaatatactgggaaaatgacaagatttggagtcagaattcaa
agaagagatagaaatattgataagacttcaagttctaatgaagacagaat
ttaaaagtcaataacccaactagaaaactcaaggaaaaccctcaaaagta
aatgactacactgactgtcaggactcaaatacagaggaattaaatcacac
aagtaaatgatatatttttttaaaaaatgggaaaggagcaagcaggaact
aggggacactatgaaagaaccaaatcttctaattatagacatagatgagg
gagaataattccaggtcaatgacaaagactagatctttgacataatcata
aaagtaagttgccccaaactaaggaacaatataaacatatgcaagaataa
cacagaacacatatacaagaagaaaagatctctatccctctgtgtgtgtg
tgtgtgtctctctctgtcactctctgtcactctctctctctctctctctc
tctctctctctctctctctatct
gaattccttcttttaatgatttctcattattcttgccttctgtccatgct
ctgtgaaccaattctcctacaacacattcaggcccattagacttaatgtc
tggttacatctctgttggtactgataaaaaaatgaattctggaagaccag
aaagggaaaaaaaatcaatgttttgctcaggatccttaatctcattttag
gaaatcttgtttatgctgtggaattcagtatcggatgatttcaagctttg
agggtatcaaagacttgcctttgaattttctccaaagttcttattacttg
atatgtttaagttctgataatgtcactaaaaaaaaaagattctttttttt
aacttatatatatctgtatatacttgtgtgtaggtatgtatacatgagtg
cagatgcctgtggaggccaaaggagggcactggatgccctgaagctagag
ctacaagtagttgtgagctgcctgatataggtgctgggaactgaacttgg
gtcttccaccaaaacagcaagtgtgccatctttccagttccataatgtta
ctttttaaaagaacattggtgtactactttatcattatagaattttcttc
tatcgcctaatgactgggtaaataaaaagtactttattgctacaatggat
tgttattcagcaacaaaaaggttttttggtttttttttttttttttttgt
tgttgttgttttcgagacagggtttctctgcgtagctctggctgtcctgg
aactcactttgtagaccaggctggcctcaaactcagaaatccacctgcct
tctgcctcctgagtgctgggattaaaggcgtgcgccaccacgcctgacaa
caaaaagtattttaaagtccatattgaggactttaaaaatataaatgaaa
agccatcataaaaattcactaacttaaatacccagatctatactctctag
gcagaagattattgttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_185521286_185521733
seq2: B6Ng01-123C04.b_581_666 (reverse)

seq1  AGATAGAGAGAGTGAGAGACACAGAGAGAGACTGAGACAGAGAGAGAGAC  50
      |||||||||||| |||||    |||||||||  |||| ||||||||||| 
seq2  AGATAGAGAGAGAGAGAG----AGAGAGAGA--GAGAGAGAGAGAGAGAG  44

seq1  AGACAGACAGGCACACACTCATACACACACACACACACACACACTCACAC  100
       |||||| ||  ||| |   | ||||||||||||||||| |         
seq2  TGACAGAGAGTGACAGAGAGAGACACACACACACACACAGAG--------  86

seq1  ACACACACAGAGAGACACAGAGAGAGACAGAGACAGACAGGCATACACAC  150
                                                        
seq2  --------------------------------------------------  86

seq1  ACAGAGAGACACACAGAGAGACACAGAAACACAGAGAGAGACAGAGACAG  200
                                                        
seq2  --------------------------------------------------  86

seq1  AGAGACATATACACACACACACACACACACAGAGACAGAGAGACATACAG  250
                                                        
seq2  --------------------------------------------------  86

seq1  AGACACAGAGAGACACAGACACACACAGAGACACAGAGAGAGACAGAGAC  300
                                                        
seq2  --------------------------------------------------  86

seq1  ACACACAGAGAGACACAGAGATACAGAGACACAGAGAGAGACAGACAGAC  350
                                                        
seq2  --------------------------------------------------  86

seq1  AGATAGGCATACACACACACACACACAGACACACAGAGAGACACAGAGAC  400
                                                        
seq2  --------------------------------------------------  86

seq1  ACACAGAGAGACATACAGAGAGAGACAGAGACACAGACACACACAGAG  448
                                                      
seq2  ------------------------------------------------  86

seq1: chr7_127827111_127827830
seq2: B6Ng01-123C04.g_66_784 (reverse)

seq1  TGTCTCGAAAACAACAACAACAAAAAAAAAAAAAAAAAAAACCAAAAAAC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCTCGAAAACAACAACAAC-AAAAAAAAAAAAAAAAAAACCAAAAAAC  49

seq1  CTTTTTGTTGCTGAATAACAATCCATTGTAGCAATAAAGTACTTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTGCTGAATAACAATCCATTGTAGCAATAAAGTACTTTTTATT  99

seq1  TACCCAGTCATTAGGCGATAGAAGAAAATTCTATAATGATAAAGTAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTCATTAGGCGATAGAAGAAAATTCTATAATGATAAAGTAGTAC  149

seq1  ACCAATGTTCTTTTAAAAAGTAACATTATGGAACTGGAAAGATGGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTTCTTTTAAAAAGTAACATTATGGAACTGGAAAGATGGCACAC  199

seq1  TTGCTGTTTTGGTGGAAGACCCAAGTTCAGTTCCCAGCACCTATATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTTTGGTGGAAGACCCAAGTTCAGTTCCCAGCACCTATATCAGG  249

seq1  CAGCTCACAACTACTTGTAGCTCTAGCTTCAGGGCATCCAGTGCCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACAACTACTTGTAGCTCTAGCTTCAGGGCATCCAGTGCCCTCCT  299

seq1  TTGGCCTCCACAGGCATCTGCACTCATGTATACATACCTACACACAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCCACAGGCATCTGCACTCATGTATACATACCTACACACAAGTA  349

seq1  TATACAGATATATATAAGTTAAAAAAAAGAATCTTTTTTTTTTAGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGATATATATAAGTTAAAAAAAAGAATCTTTTTTTTTTAGTGACA  399

seq1  TTATCAGAACTTAAACATATCAAGTAATAAGAACTTTGGAGAAAATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAACTTAAACATATCAAGTAATAAGAACTTTGGAGAAAATTCAA  449

seq1  AGGCAAGTCTTTGATACCCTCAAAGCTTGAAATCATCCGATACTGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTCTTTGATACCCTCAAAGCTTGAAATCATCCGATACTGAATTC  499

seq1  CACAGCATAAACAAGATTTCCTAAAATGAGATTAAGGATCCTGAGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATAAACAAGATTTCCTAAAATGAGATTAAGGATCCTGAGCAAAA  549

seq1  CATTGATTTTTTTTCCCTTTCTGGTCTTCCAGAATTCATTTTTTTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTTTTTTCCCTTTCTGGTCTTCCAGAATTCATTTTTTTATCAG  599

seq1  TACCAACAGAGATGTAACCAGACATTAAGTCTAATGGGCCTGAATGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAGAGATGTAACCAGACATTAAGTCTAATGGGCCTGAATGTGTT  649

seq1  GTAGGAGAATTGGTTCACAGAGCATGGACAGAAGGCAAGAATAATGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGAATTGGTTCACAGAGCATGGACAGAAGGCAAGAATAATGAGAA  699

seq1  ATCATTAAAAGAAGGAATTC  720
      ||||||||||||||||||||
seq2  ATCATTAAAAGAAGGAATTC  719