BAC Information

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BAC

Clone NameB6Ng01-123D16
Chromosome1 (Build37)
Map Location 29,139,691 - 29,277,098
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D16.bB6Ng01-123D16.g
ACCDH926452DH926453
length9981,096
definitionDH926452|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D16, 5' end.DH926453|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,276,097 - 29,277,098)(29,139,691 - 29,140,809)
sequence
gaattcattgccatgccaggagctttcatttcttcagtttcttctgggtt
atcttttcttctgtgcagcttcagcttctggctttggacatctgttcctt
ctcattgaggatcatctcagagtggcagggggagctcatgtaggggttaa
tccagccatgagctctgtagattcttcacagcatcttaggtgtcttgttc
acctagatgtgttcaatgtctagagagtctacttctaaacccttaagttc
agcataactctctacatttttaagcacttgcagcaaaaactcagcaccct
ttttggataccttccccttgtccaggcccactgtttggcctgggcacacc
tactgactccaccattatacctcaggaatggctcacattgcttctttaaa
gtgacatccttcagatacttggtagttttgcagaaatgcataactttgat
ggcctgggaagtttccccgttgtttttaaaatgaagaggaaggtttggac
ctcttgatttgcatgattttgtggttctttctgggtcaagagattagtga
accatcttcacaggtcacctctggctgcttacagtgatgacttctttaat
agctttacatgcccacacatactaaggtaaacgtcctaaaggtgtattgc
ctagaaaacttggtgacttggattttatccgtggtttacattaaccttca
agttttacttatcttaggaataataacaagtttgatttttttctttaatt
cataagtgatcattagatggaaagaaagagaataagaaattatgtcacat
tcagtacagaagataacaaatcatcttttgattgctgatttttaattatt
gattgtggaatgactctatctatattcactgcttgtagactaagaacaaa
cataaatgccaacaaccttttgtcaggcatgaaaaactaaatttgttttc
tttttctgtttgttaaacatcacattttaagccgagagagaaaagcag
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcctggtttgggatcttcct
gagaagcaagcaataaagctcttgccgcagaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaataataaatatataaattaatatg
tattcacttaatctctgtgtatttttcaatatccacacaaattaaatcaa
tgctcaaaatgtaagatgtatttagcattataaatatgatcatgaaactc
attatttctttactaattgagtaacagcaatttttcaatgctataaatga
tatatttattatcttatacacatatttctacttgtatatatcatttatat
tgtatcaactttgaaataaaataaatttactttttggaattaagaaaata
tataaaaacaataccccatggacattctaactttaagttttctatgattg
tgtcttataaatactgttatggctttgtgagtaagtaatacaatctttaa
attataatctctaattatattttgctaacaaacttccttaaagacagtag
tttgctttaaagtctgttgagagaacatgtgttcttaaaaaaatgttgtg
ttctgtatattaataaagataacttgattgattacattcagtattacttt
aacctcccattagtaattagaattttgacttaacatgtcatgtttgggat
tgagacctgtagtctacaggtgcccttattagtatatccattattaaaaa
ttcaggtgaattctgcattatactttctaatcatcaatttttaagtgaaa
tacagttatctaaattgttcaaattaatcattttgagcattgcgtacttt
agggactgttctgactctttttagtaaataacttgtggactatgcttaca
tgagtagcttatacttcacagatatataccatacaggcttcatggtagat
catgttttatgaacccaggtttactttccattaagaattgattatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_29276097_29277098
seq2: B6Ng01-123D16.b_46_1043 (reverse)

seq1  CTGCTTTTCTTCCTCTCCGGCTTAAAATGTGATGTTTAACAAACAGAAAA  50
      ||||||||||  |||| |||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCT--CTCT-CGGCTTAAAATGTGATGTTTAACAAACAGAAAA  47

seq1  AGAAAACAAATTTAGTTTTTTCATGCCTGACAAAAGGTTGTTGGCATTTA  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAATTTAG-TTTTTCATGCCTGACAAAAGGTTGTTGGCATTTA  96

seq1  TGTTTGTTCTTAGTCTACAAGCAGTGAATATAGATAGAGTCATTCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCTTAGTCTACAAGCAGTGAATATAGATAGAGTCATTCCACAA  146

seq1  TCAATAATTAAAAATCAGCAATCAAAAGATGATTTGTTATCTTCTGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATTAAAAATCAGCAATCAAAAGATGATTTGTTATCTTCTGTACT  196

seq1  GAATGTGACATAATTTCTTATTCTCTTTCTTTCCATCTAATGATCACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGACATAATTTCTTATTCTCTTTCTTTCCATCTAATGATCACTTA  246

seq1  TGAATTAAAGAAAAAAATCAAACTTGTTATTATTCCTAAGATAAGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAGAAAAAAATCAAACTTGTTATTATTCCTAAGATAAGTAAAA  296

seq1  CTTGAAGGTTAATGTAAACCACGGATAAAATCCAAGTCACCAAGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTTAATGTAAACCACGGATAAAATCCAAGTCACCAAGTTTTCT  346

seq1  AGGCAATACACCTTTAGGACGTTTACCTTAGTATGTGTGGGCATGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATACACCTTTAGGACGTTTACCTTAGTATGTGTGGGCATGTAAAG  396

seq1  CTATTAAAGAAGTCATCACTGTAAGCAGCCAGAGGTGACCTGTGAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAGAAGTCATCACTGTAAGCAGCCAGAGGTGACCTGTGAAGATG  446

seq1  GTTCACTAATCTCTTGACCCAGAAAGAACCACAAAATCATGCAAATCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAATCTCTTGACCCAGAAAGAACCACAAAATCATGCAAATCAAG  496

seq1  AGGTCCAAACCTTCCTCTTCATTTTAAAAACAACGGGGAAACTTCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAACCTTCCTCTTCATTTTAAAAACAACGGGGAAACTTCCCAGG  546

seq1  CCATCAAAGTTATGCATTTCTGCAAAACTACCAAGTATCTGAAGGATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAGTTATGCATTTCTGCAAAACTACCAAGTATCTGAAGGATGTC  596

seq1  ACTTTAAAGAAGCAATGTGAGCCATTCCTGAGGTATAATGGTGGAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGAAGCAATGTGAGCCATTCCTGAGGTATAATGGTGGAGTCAG  646

seq1  TAGGTGTGCCCAGGCCAAACAGTGGGCCTGGACAAGGGGAAGGTATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGCCCAGGCCAAACAGTGGGCCTGGACAAGGGGAAGGTATCCAA  696

seq1  AAAGGGTGCTGAGTTTTTGCTGCAAGTGCTTAAAAATGTAGAGAGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGCTGAGTTTTTGCTGCAAGTGCTTAAAAATGTAGAGAGTTATG  746

seq1  CTGAACTTAAGGGTTTAGAAGTAGACTCTCTAGACATTGAACACATCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTAAGGGTTTAGAAGTAGACTCTCTAGACATTGAACACATCTAG  796

seq1  GTGAACAAGACACCTAAGATGCTGTGAAGAATCTACAGAGCTCATGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAAGACACCTAAGATGCTGTGAAGAATCTACAGAGCTCATGGCTG  846

seq1  GATTAACCCCTACATGAGCTCCCCCTGCCACTCTGAGATGATCCTCAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACCCCTACATGAGCTCCCCCTGCCACTCTGAGATGATCCTCAATG  896

seq1  AGAAGGAACAGATGTCCAAAGCCAGAAGCTGAAGCTGCACAGAAGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACAGATGTCCAAAGCCAGAAGCTGAAGCTGCACAGAAGAAAAG  946

seq1  ATAACCCAGAAGAAACTGAAGAAATGAAAGCTCCTGGCATGGCAATGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCAGAAGAAACTGAAGAAATGAAAGCTCCTGGCATGGCAATGAAT  996

seq1  TC  1002
      ||
seq2  TC  998

seq1: chr1_29139691_29140809
seq2: B6Ng01-123D16.g_67_1162

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCTGGTTTGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCTGGTTTGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTCTTGCCGCAGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTCTTGCCGCAGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATAATAAATATATAAATTAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATAATAAATATATAAATTAATATG  250

seq1  TATTCACTTAATCTCTGTGTATTTTTCAATATCCACACAAATTAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTAATCTCTGTGTATTTTTCAATATCCACACAAATTAAATCAA  300

seq1  TGCTCAAAATGTAAGATGTATTTAGCATTATAAATATGATCATGAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAAATGTAAGATGTATTTAGCATTATAAATATGATCATGAAACTC  350

seq1  ATTATTTCTTTACTAATTGAGTAACAGCAATTTTTCAATGCTATAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTTTACTAATTGAGTAACAGCAATTTTTCAATGCTATAAATGA  400

seq1  TATATTTATTATCTTATACACATATTTCTACTTGTATATATCATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTATCTTATACACATATTTCTACTTGTATATATCATTTATAT  450

seq1  TGTATCAACTTTGAAATAAAATAAATTTACTTTTTGGAATTAAGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAACTTTGAAATAAAATAAATTTACTTTTTGGAATTAAGAAAATA  500

seq1  TATAAAAACAATACCCCATGGACATTCTAACTTTAAGTTTTCTATGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAACAATACCCCATGGACATTCTAACTTTAAGTTTTCTATGATTG  550

seq1  TGTCTTATAAATACTGTTATGGCTTTGTGAGTAAGTAATACAATCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATAAATACTGTTATGGCTTTGTGAGTAAGTAATACAATCTTTAA  600

seq1  ATTATAATCTCTAATTATATTTTGCTAACAAACTTCCTTAAAGACAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATCTCTAATTATATTTTGCTAACAAACTTCCTTAAAGACAGTAG  650

seq1  TTTGCTTTAAAGTCTGTTGAGAGAACATGTGTTCTTAAAAAAATGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAAAGTCTGTTGAGAGAACATGTGTTCTTAAAAAAATGTTGTG  700

seq1  TTCTGTATATTAATAAAGATAACTTGATTGATTACATTCAGTATTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATATTAATAAAGATAACTTGATTGATTACATTCAGTATTACTTT  750

seq1  AACCTCCCATTAGTAATTAGAATTTTGACTTAACATGTCATGTTTGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCATTAGTAATTAGAATTTTGACTTAACATGTCATGTTTGGGAT  800

seq1  TGAGACCTGTAGTCTACAGGTGCCCTTATTAGTATATCCATTATTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGTAGTCTACAGGTGCCCTTATTAGTATATCCATTATTAAAAA  850

seq1  TTCA-GTGAATTCTGCATTATACTTTCTAATCATCAAATTTTTAAGTGAA  899
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCAGGTGAATTCTGCATTATACTTTCTAATCATC-AATTTTTAAGTGAA  899

seq1  AATAACAGTTATTCTAAATTGTTCAAATTAAATCATTTTTGAAGCATTGC  949
      |   ||||||| ||||||||||||||||| |||||||||   ||||||||
seq2  A--TACAGTTA-TCTAAATTGTTCAAATT-AATCATTTT--GAGCATTGC  943

seq1  GTACTTTTAGGGAACTGTTCTGAACTCTTTTTAGTAAAATAAACCTTGT-  998
      |||| ||||||| ||||||||| |||||||||||| ||||||  ||||| 
seq2  GTAC-TTTAGGG-ACTGTTCTG-ACTCTTTTTAGT-AAATAA--CTTGTG  987

seq1  GACTAATGCTTACATGAAGTAGCTTATACTCAACCAAGATATATTACAAA  1048
      |||| ||||||||||| |||||||||||||  ||  ||||||||  ||  
seq2  GACT-ATGCTTACATG-AGTAGCTTATACTTCAC--AGATATATACCA--  1031

seq1  TTACA-GCTTCATTGTAAGATCAAATGTTTTATGAACCCAGTGTTACTTT  1097
       |||| ||||||| || |||||  |||||||||||||||||  |||||||
seq2  -TACAGGCTTCATGGT-AGATC--ATGTTTTATGAACCCAGGTTTACTTT  1077

seq1  CACATAAAAGAATTGTATTATC  1119
      | |||  |||||||| ||||||
seq2  C-CAT-TAAGAATTG-ATTATC  1096