BAC Information

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BAC

Clone NameB6Ng01-123E06
Chromosome1 (Build37)16 (Build37)
Map Location 45,287,765 - 45,287,80420,759,407 - 20,760,387
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E06.bB6Ng01-123E06.g
ACCDH926478DH926479
length254976
definitionDH926478|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E06, 5' end.DH926479|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,287,765 - 45,287,804)(20,759,407 - 20,760,387)
sequence
tcacccaaggaaagagtcctaaaacaagggtcagggtagtacaggggtaa
ctccacgctcaagaactctcccctgggaccatggatggttgtggggttta
caagggagcatggatctcttgtggtgattgagctgagaagggatgcaaac
ctgcagagtttctagatctgagttacagtgccaatgttgtgattataaaa
aatataaagagatataagaatatgttctatggggtgtggtgaggtgtggg
ggaa
gaattccactttcttagctgggtggtggcggcgcacgcctttaatcccag
cactcgggaggcagaggcagacagattattgagttcgaggccaccctggc
ctacagagtgagttccaggacagccagccagggctacacagagaaaccct
atcttgaaaaaaccaaccaaccaaccaacccccccaaaaaaacccaaaaa
aaccaaaacaaatggttgtacaatttctgtacaaggaaccattgatgttg
acatttggaaatgcataggagctattgtaaaaagaacccatgagaaggaa
gctaagtgtcctttcagttattttgcagtctgggttaaagtaatatatag
tttgaacactctcaggagaatcatcacacacacacacacacacacacaca
cacacacacacacaccccttggtagagtgagctgactccactgcttctgg
cttctcagcagtcctgacattgctgaaccttctgtcccctggggtccacc
caagtggacctgagtctgatgtccatcatctaggtttggcccagcagaca
gccagactgtgctggccacagtgtgagtgtgaagctgatgcctttgcacc
aaggctcgactgccctagggaccccttagctttttgttttctctcacagc
agggctcacccaatatggactgatcaatggtcccttcatgaagaaaaatt
aaaatagacccaacttctagtagaggaacaattgtaacttggaaatagag
aattttcagttagttcttggaattcctctatttttgtaattttagaaagg
caaagagtaaatttcaactgttaaattatctcagagcataaatgctagca
tggaaacattggggccccaaccaggctccctgatcctcaaggccactgca
ttttattacttgacttaaaaagactgctttttctcaatattttccccctt
tcccttctccctcttgatctggcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45287765_45287804
seq2: B6Ng01-123E06.b_266_304 (reverse)

seq1  TTCCCCCATAACTCACCACACCCCCATAGAACATATTCTT  40
      |||||||| | ||||||||| |||||||||||||||||||
seq2  TTCCCCCACACCTCACCACA-CCCCATAGAACATATTCTT  39

seq1: chr16_20759407_20760387
seq2: B6Ng01-123E06.g_68_1042

seq1  GAATTCCACTTTCTTAGCTGGGTGGTGGCGGCGCACGCCTTTAATCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTTCTTAGCTGGGTGGTGGCGGCGCACGCCTTTAATCCCAG  50

seq1  CACTCGGGAGGCAGAGGCAGACAGATTATTGAGTTCGAGGCCACCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGGAGGCAGAGGCAGACAGATTATTGAGTTCGAGGCCACCCTGGC  100

seq1  CTACAGAGTGAGTTCCAGGACAGCCAGCCAGGGCTACACAGAGAAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAGCCAGCCAGGGCTACACAGAGAAACCCT  150

seq1  ATCTTGAAAAAACCAACCAACCAACCAACCCCCCCAAAAAAACCCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAAAAAACCAACCAACCAACCAACCCCCCCAAAAAAACCCAAAAA  200

seq1  AACCAAAACAAATGGTTGTACAATTTCTGTACAAGGAACCATTGATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACAAATGGTTGTACAATTTCTGTACAAGGAACCATTGATGTTG  250

seq1  ACATTTGGAAATGCATAGGAGCTATTGTAAAAAGAACCCATGAGAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGAAATGCATAGGAGCTATTGTAAAAAGAACCCATGAGAAGGAA  300

seq1  GCTAAGTGTCCTTTCAGTTATTTTGCAGTCTGGGTTAAAGTAATATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGTCCTTTCAGTTATTTTGCAGTCTGGGTTAAAGTAATATATAG  350

seq1  TTTGAACACTCTCAGGAGAATCATCACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACTCTCAGGAGAATCATCACACACACACACACACACACACACA  400

seq1  CACACACACACACACCCCTTGGTAGAGTGAGCTGACTCCACTGCTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCCCTTGGTAGAGTGAGCTGACTCCACTGCTTCTGG  450

seq1  CTTCTCAGCAGTCCTGACATTGCTGAACCTTCTGTCCCCTGGGGTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCAGTCCTGACATTGCTGAACCTTCTGTCCCCTGGGGTCCACC  500

seq1  CAAGTGGACCTGAGTCTGATGTCCATCATCTAGGTTTGGCCCAGCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGACCTGAGTCTGATGTCCATCATCTAGGTTTGGCCCAGCAGACA  550

seq1  GCCAGACTGTGCTGGCCACAGTGTGAGTGTGAAGCTGATGCCTTTGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTGTGCTGGCCACAGTGTGAGTGTGAAGCTGATGCCTTTGCACC  600

seq1  AAGGCTCGACTGCCCTAGGGACCCCTTAGCTTTTTGTTTTCTCTCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCGACTGCCCTAGGGACCCCTTAGCTTTTTGTTTTCTCTCACAGC  650

seq1  AGGGCTCACCCAATATGGACTGATCAATGGTCCCTTCATGAAGAAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCACCCAATATGGACTGATCAATGGTCCCTTCATGAAGAAAAATT  700

seq1  AAAATAGACCCAACTTCTAGTAGAGGAACAATTGTAACTTGGAAATAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGACCCAACTTCTAGTAGAGGAACAATTGTAACTTGGAAATAGAG  750

seq1  AATTTTCAGTTAGTTCTTGGAATTCCTCTATTTTTGTAATTATTAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTTTCAGTTAGTTCTTGGAATTCCTCTATTTTTGTAATT-TTAGAAAG  799

seq1  GCAAAGAGTAAATTTCAACTGTTAAATTATCTCAGGAGCATAAATGCTAG  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAAAGAGTAAATTTCAACTGTTAAATTATCTCA-GAGCATAAATGCTAG  848

seq1  CATGGAAACAATTGGGGCCCCCAACCAGGCTCCCTGATCCTCAAGGCCAC  900
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CATGGAAAC-ATTGGGG-CCCCAACCAGGCTCCCTGATCCTCAAGGCCAC  896

seq1  TGCATTTTTATACTTGACTT-AAAAGACTGCTTTTTCTCAATTATTTTTC  949
      ||||||||  |||||||||| |||||||||||||||||||| ||||||  
seq2  TGCATTTTATTACTTGACTTAAAAAGACTGCTTTTTCTCAA-TATTTT--  943

seq1  CCCCCTTTCCCTTCTCCCTCTTGATCTGGCCC  981
      ||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCCCTTCTCCCTCTTGATCTGGCCC  975