BAC Information

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BAC

Clone NameB6Ng01-123G05
Chromosome1 (Build37)
Map Location 74,417,750 - 74,534,332
singlet/doubletdoublet
Overlap geneSlc11a1, Ctdsp1, Vil1, Usp37
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216
Downstream geneRqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G05.bB6Ng01-123G05.g
ACCDH926564DH926565
length1,184614
definitionDH926564|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G05, 5' end.DH926565|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,533,128 - 74,534,332)(74,417,750 - 74,418,363)
sequence
gaattcagtcccagaatcacataattcttaatgtcaccatataactgtca
acaccactggccttttgacattctacttgtcaaatgtgttcacattactg
cacgggccattcattgggtagagataggataatattgatggtcctctgta
tctttataaaatattttaatggcagtgcttttgatttaaatttttaaaaa
ttttatgtctatggtcattttgcctacctttatgtctgggtgccatgtgt
gtattttggtgccttatgaggccagaaaacagcatcatatttatctcttt
gaactggagtttcagatggtgggttttttttgccatatgaatgctagaac
ttgaacctgggtcctctgaaacagcagccagtgctctaacttttgtgtca
tcatgctaactcattaatctatgtcttttaatgttactttgctctatgtt
caagcccaagcaccacaaaacataaaattctcaggtgtataaagcaaagt
aacataaaagaacatagtgtcatagactctcctggagatgttttgtaaat
atattcctaggtgctgagcaggaagctcagtggtggtgctgggtgtcaca
cagaggaataatccacacagtgagtcttagaccaaagagactggactaga
aataaatacctggttgtatttttttttaactctccataaaaattgttgct
ctaaaaaaatttaaatagctctggtattgcagctcagtttctagacttgt
ttagcacatatggaaccctgatgtgccccttggaatcacattaaccagat
acagtggtgcacgtctataatcttagtacttaggaagtagataggccatc
ctctgctaaacttagcaagtttgatgttgtcatggattttatatgcgatc
ctgtctcaaatatgttttcctttaagtcaaagatttaactgtctccgttt
attcttacaggcctctcaaaagaggaagtttagaaactaaagatgaattc
catttcgaaaagtcttgtcagtctggtagaaggaccattagactgtaact
ggaggtggatgctgtacccggactattccttcctttgagctgacattcaa
ccctctctaaatcagatttataggaaccgtagaagactccttcagcacct
gttttaatgtcttgggattgaggatttgagggag
gaattccagagcagtcagggttgcacagtgaattcctatctcaaaaacaa
acgacagaagcaggatgcagtggcatgaagctgtgatcctagcacctcta
tggcaagactggagacagagagaccggagaagcactttgaaacttttgga
ctctctagcctagagtacacatctgcagcagtagaaacaggccctgcctc
aacgaggtaaaaggtggactggagcgtaccctaggctgtaggcccctgga
cacatcgccttccgtgttctcacacaccccaagactgactttgctcatcc
atcagtgcccttggctttgttattgatctttctttgctctctggacagtc
tcatcatgaattctatgctagcttcagcctcgcaagtgttgagatcacag
gtggataccaccatcaccaaacgaccagtgtgtttagaacacacttgtca
tatcattacagccctctatcttcatgtctctgtatgctggtacagtatgc
tggtagggatttaacccagagcttcatgcatactaaacacatacaaggga
ggcacaaactccattctcttggttgtcctttagccacccccacttttggg
ggtggggggagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74533128_74534332
seq2: B6Ng01-123G05.b_48_1231 (reverse)

seq1  CTCCTTCAATTCCTCAAAATCCCAAAAGACATTTATAAACAGGTGCTGAA  50
      |||| |||| |||||  ||||||  ||||||||   ||||||||||||||
seq2  CTCCCTCAAATCCTC--AATCCC--AAGACATT--AAAACAGGTGCTGAA  44

seq1  GGAAGTCTTTCCTACCGGTTTTCTAATAATCCTGATCTA-AGAGGTGTTG  99
      || ||||||  |||| |   |||  ||||  ||||| || ||||| ||||
seq2  GG-AGTCTT--CTACGG---TTCCTATAAATCTGATTTAGAGAGG-GTTG  87

seq1  -ATGTCAGCGTCAAA-GAAGGAATAGTCCGGGTAACAGCCATTCCACCTC  147
       |||||||| ||||| ||||||||||||||||| |||||   ||||||||
seq2  AATGTCAGC-TCAAAGGAAGGAATAGTCCGGGT-ACAGC--ATCCACCTC  133

seq1  CAGTTACAGTCTTAATTGGTCC-TCTACCAGGACTGCCAAGAACTTTTCG  196
      ||||||||||||  | |||||| ||||||| ||||| |||| ||||||||
seq2  CAGTTACAGTCT--AATGGTCCTTCTACCA-GACTGACAAG-ACTTTTCG  179

seq1  AAATGGAATTTCATCTTTAGTTTCTAAACTTCCTCTTTTTGAAGAGGCCT  246
      |||||||| ||||||||||||||||||||||||||||||   ||||||||
seq2  AAATGGAA-TTCATCTTTAGTTTCTAAACTTCCTCTTTT--GAGAGGCCT  226

seq1  GTAAGAATAAAACGGAGACAGTTAAATCTTTGACTTAAAGGAAAACATAT  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAT-AAACGGAGACAGTTAAATCTTTGACTTAAAGGAAAACATAT  275

seq1  TTGAGACAGGATCGCATATAAAATCCATGACAACATCAAACTTGCTAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGATCGCATATAAAATCCATGACAACATCAAACTTGCTAAGT  325

seq1  TTAGCAGAGGATGGCCTATCTACTTCCTAAGTACTAAGATTATAGACGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAGGATGGCCTATCTACTTCCTAAGTACTAAGATTATAGACGTG  375

seq1  CACCACTGTATCTGGTTAATGTGATTCCAAGGGGCACATCAGGGTTCCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGTATCTGGTTAATGTGATTCCAAGGGGCACATCAGGGTTCCAT  425

seq1  ATGTGCTAAACAAGTCTAGAAACTGAGCTGCAATACCAGAGCTATTTAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAACAAGTCTAGAAACTGAGCTGCAATACCAGAGCTATTTAAA  475

seq1  TTTTTTTAGAGCAACAATTTTTATGGAGAGTTAAAAAAAAATACAACCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGAGCAACAATTTTTATGGAGAGTTAAAAAAAAATACAACCAG  525

seq1  GTATTTATTTCTAGTCCAGTCTCTTTGGTCTAAGACTCACTGTGTGGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTCTAGTCCAGTCTCTTTGGTCTAAGACTCACTGTGTGGATT  575

seq1  ATTCCTCTGTGTGACACCCAGCACCACCACTGAGCTTCCTGCTCAGCACC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGTGTGACACCCAGCACCACCACTGAGCTTCCTGCTCAGCACC  625

seq1  TAGGAATATATTTACAAAACATCTCCAGGAGAGTCTATGACACTATGTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATATATTTACAAAACATCTCCAGGAGAGTCTATGACACTATGTTC  675

seq1  TTTTATGTTACTTTGCTTTATACACCTGAGAATTTTATGTTTTGTGGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTACTTTGCTTTATACACCTGAGAATTTTATGTTTTGTGGTGC  725

seq1  TTGGGCTTGAACATAGAGCAAAGTAACATTAAAAGACATAGATTAATGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTGAACATAGAGCAAAGTAACATTAAAAGACATAGATTAATGAG  775

seq1  TTAGCATGATGACACAAAAGTTAGAGCACTGGCTGCTGTTTCAGAGGACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGATGACACAAAAGTTAGAGCACTGGCTGCTGTTTCAGAGGACC  825

seq1  CAGGTTCAAGTTCTAGCATTCATATGGCAAAAAAAACCCACCATCTGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAAGTTCTAGCATTCATATGGCAAAAAAAACCCACCATCTGAAA  875

seq1  CTCCAGTTCAAAGAGATAAATATGATGCTGTTTTCTGGCCTCATAAGGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTCAAAGAGATAAATATGATGCTGTTTTCTGGCCTCATAAGGCA  925

seq1  CCAAAATACACACATGGCACCCAGACATAAAGGTAGGCAAAATGACCATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATACACACATGGCACCCAGACATAAAGGTAGGCAAAATGACCATA  975

seq1  GACATAAAATTTTTAAAAATTTAAATCAAAAGCACTGCCATTAAAATATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAATTTTTAAAAATTTAAATCAAAAGCACTGCCATTAAAATATT  1025

seq1  TTATAAAGATACAGAGGACCATCAATATTATCCTATCTCTACCCAATGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGATACAGAGGACCATCAATATTATCCTATCTCTACCCAATGAA  1075

seq1  TGGCCCGTGCAGTAATGTGAACACATTTGACAAGTAGAATGTCAAAAGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGTGCAGTAATGTGAACACATTTGACAAGTAGAATGTCAAAAGGC  1125

seq1  CAGTGGTGTTGACAGTTATATGGTGACATTAAGAATTATGTGATTCTGGG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTTGACAGTTATATGGTGACATTAAGAATTATGTGATTCTGGG  1175

seq1  ACTGAATTC  1205
      |||||||||
seq2  ACTGAATTC  1184

seq1: chr1_74417750_74418363
seq2: B6Ng01-123G05.g_69_682

seq1  GAATTCCAGAGCAGTCAGGGTTGCACAGTGAATTCCTATCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCAGTCAGGGTTGCACAGTGAATTCCTATCTCAAAAACAA  50

seq1  ACGACAGAAGCAGGATGCAGTGGCATGAAGCTGTGATCCTAGCACCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGAAGCAGGATGCAGTGGCATGAAGCTGTGATCCTAGCACCTCTA  100

seq1  TGGCAAGACTGGAGACAGAGAGACCGGAGAAGCACTTTGAAACTTTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGACTGGAGACAGAGAGACCGGAGAAGCACTTTGAAACTTTTGGA  150

seq1  CTCTCTAGCCTAGAGTACACATCTGCAGCAGTAGAAACAGGCCCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGCCTAGAGTACACATCTGCAGCAGTAGAAACAGGCCCTGCCTC  200

seq1  AACGAGGTAAAAGGTGGACTGGAGCGTACCCTAGGCTGTAGGCCCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGTAAAAGGTGGACTGGAGCGTACCCTAGGCTGTAGGCCCCTGGA  250

seq1  CACATCGCCTTCCGTGTTCTCACACACCCCAAGACTGACTTTGCTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCGCCTTCCGTGTTCTCACACACCCCAAGACTGACTTTGCTCATCC  300

seq1  ATCAGTGCCCTTGGCTTTGTTATTGATCTTTCTTTGCTCTCTGGACAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCCCTTGGCTTTGTTATTGATCTTTCTTTGCTCTCTGGACAGTC  350

seq1  TCATCATGAATTCTATGCTAGCTTCAGCCTCGCAAGTGTTGAGATCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGAATTCTATGCTAGCTTCAGCCTCGCAAGTGTTGAGATCACAG  400

seq1  GTGGATACCACCATCACCAAACGACCAGTGTGTTTAGAACACACTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACCACCATCACCAAACGACCAGTGTGTTTAGAACACACTTGTCA  450

seq1  TATCATTACAGCCCTCTATCTTCATGTCTCTGTATGCTGGTACAGTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTACAGCCCTCTATCTTCATGTCTCTGTATGCTGGTACAGTATGC  500

seq1  TGGTAGGGATTTAACCCAGAGCTTCATGCATACTAAACACATACAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGGATTTAACCCAGAGCTTCATGCATACTAAACACATACAAGGGA  550

seq1  GGCACAAACTCCATTCTCTTGGTTGTCCTTTAGCCACCCCCACTTTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAACTCCATTCTCTTGGTTGTCCTTTAGCCACCCCCACTTTTGGG  600

seq1  GGTGGGGGGAGTTG  614
      ||||||||||||||
seq2  GGTGGGGGGAGTTG  614