BAC Information

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BAC

Clone NameB6Ng01-123G13
Chromosome1 (Build37)
Map Location 52,388,651 - 52,528,194
singlet/doubletdoublet
Overlap geneNab1
Upstream geneLOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735
Downstream geneLOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G13.bB6Ng01-123G13.g
ACCDH926580DH926581
length1,1271,097
definitionDH926580|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G13, 5' end.DH926581|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,388,651 - 52,389,793)(52,527,094 - 52,528,194)
sequence
gaattccatttaaaaaaaaaaaaagttctgaaaacagaccgtacatggct
gtgaaatctgactggctttctttctgaaggtatgtatgggagaggacaac
tttgaaactgtaaagctacactggaacatgctttcattgaaagaaatgct
tatttaaaaataatactcatcccatacagtacatagcagtgctgttaaaa
gtcatgtgcaagttatcaaatttcaagggagtatcagccacacacggatt
tctcagttgttcataacgataggactgaaacgcacggcttccagatcctt
taaatagcttttggagggaagaacattataattaagctgcatcgagtgtc
actgcaaagaagcttctaaattacgggtctgagtgggggcgaggaatgct
ctttgattgcctgacaatcaacagcagaagatgttcacatacgcgtaacc
cagactcactgtaattatatcagaagcagaagaggtgggcgcggcgggag
cagcctgattcactaatcatttgcttgttgttctttcaaaaatcatcttc
agactagtcacaaacactcaggaattcatatttacagagtggctctgtat
cagaaaggatagaaagaaggaccagtcctttcagtgtgtctcagaaaggt
tgtcaaaaaatggcccaggacacactaagaagatgctcctgctgtgggaa
ctagtgcactcacctggcctcagctgctttactcaaagcctaatgtcaga
aacgatattcccccacttattcccataatttttatcccatttccactcgg
ctccctgttggcttaaaaggtccctttttcttttaaggcataagaatatg
gaggaatgtcataatattgtgtagtctccagaacctctcttgcctcttaa
agaggctcagatattgcctcttggtggggcgggcactgggaaatcagtgt
cttctccctgcccagaaggtactatactgctcaccctcgtgccaaggctt
tgatacacacagcactgtggggcttcattgagaagcatggaatttaaacg
gactggcagaaggaatgtaccctttcttaccgagcctttgtttttgagat
gctaagactagcacgacgtgtatgaac
ttaacagaccagaaagtccgagaactgggtttgaacaagaaagaggaaac
atctgccagccagctgctctggggaagcagggagtgagaggcagggtcag
aatatccacctacactgtgactaagctcgtgaaaggaaagctggtggagt
ctgaagtgggctcttctctctagatcagaaaagcagaaacagtacaacct
gctattcatacagaaaacgtgaatagagaaaggggaaaacgcacacgtgg
ggttaagaacatctgccaccatgcatctttccaagacaactgggcagcca
ctttaaaacagctcactggtgcttagtgggaaagagagagaggaaaccaa
tggtgtgagactaattaggtcacaagcacgtatcatatattctcattgct
gagctccagattctcatcaccaagggaatgctgtaattaatggcagcagc
catcaatgtgacatggagataaattgctcatggcatggtacagctggtgc
ctagaaagaaggctacagagacccaaaataagccttgtaccaaatacagt
aaagacaaagctattcttctaccaatatactagtatcttagagatgttct
ccctgttgtttatctgttggataacgagatgcctcgtttctcattataaa
cagtggagcactaactacccgttttccagcaagctttcatgtacaaagtt
tggaggtccccaccccagttttgcagtattctcatagctgaccatgaaag
gccctcatgacaagatttgccatctgcatagttcatttaattcccacaaa
tctccctgggcaggcaaagcaagtgatgcaatctccatggaaaattggga
atgctggtaaacgatgtggttagcttgctgagaccacacatctggtccta
aacacaagaggactggttagctacttcttcgttcatagcctcttcaaaca
gtatttaggatattgggacatctggggatctgtcagcagctacacccaca
acaatactgtgagctggatggctgctgtaagtctcagccctgaactcctc
ttgggtcaaggtactacccctacttacaggtttaataacagggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52388651_52389793
seq2: B6Ng01-123G13.b_48_1174

seq1  GAATTCCATTTAAAAAAAAAAAAAGTTCTGAAAACAGACCGTACATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAAAAAAAAAAAAGTTCTGAAAACAGACCGTACATGGCT  50

seq1  GTGAAATCTGACTGGCTTTCTTTCTGAAGGTATGTATGGGAGAGGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGACTGGCTTTCTTTCTGAAGGTATGTATGGGAGAGGACAAC  100

seq1  TTTGAAACTGTAAAGCTACACTGGAACATGCTTTCATTGAAAGAAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACTGTAAAGCTACACTGGAACATGCTTTCATTGAAAGAAATGCT  150

seq1  TATTTAAAAATAATACTCATCCCATACAGTACATAGCAGTGCTGTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAATAATACTCATCCCATACAGTACATAGCAGTGCTGTTAAAA  200

seq1  GTCATGTGCAAGTTATCAAATTTCAAGGGAGTATCAGCCACACACGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGCAAGTTATCAAATTTCAAGGGAGTATCAGCCACACACGGATT  250

seq1  TCTCAGTTGTTCATAACGATAGGACTGAAACGCACGGCTTCCAGATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTGTTCATAACGATAGGACTGAAACGCACGGCTTCCAGATCCTT  300

seq1  TAAATAGCTTTTGGAGGGAAGAACATTATAATTAAGCTGCATCGAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTTTTGGAGGGAAGAACATTATAATTAAGCTGCATCGAGTGTC  350

seq1  ACTGCAAAGAAGCTTCTAAATTACGGGTCTGAGTGGGGGCGAGGAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAGAAGCTTCTAAATTACGGGTCTGAGTGGGGGCGAGGAATGCT  400

seq1  CTTTGATTGCCTGACAATCAACAGCAGAAGATGTTCACATACGCGTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTGCCTGACAATCAACAGCAGAAGATGTTCACATACGCGTAACC  450

seq1  CAGACTCACTGTAATTATATCAGAAGCAGAAGAGGTGGGCGCGGCGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCACTGTAATTATATCAGAAGCAGAAGAGGTGGGCGCGGCGGGAG  500

seq1  CAGCCTGATTCACTAATCATTTGCTTGTTGTTCTTTCAAAAATCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATTCACTAATCATTTGCTTGTTGTTCTTTCAAAAATCATCTTC  550

seq1  AGACTAGTCACAAACACTCAGGAATTCATATTTACAGAGTGGCTCTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTCACAAACACTCAGGAATTCATATTTACAGAGTGGCTCTGTAT  600

seq1  CAGAAAGGATAGAAAGAAGGACCAGTCCTTTCAGTGTGTCTCAGAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGATAGAAAGAAGGACCAGTCCTTTCAGTGTGTCTCAGAAAGGT  650

seq1  TGTCAAAAAATGGCCCAGGACACACTAAGAAGATGCTCCTGCTGTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAAATGGCCCAGGACACACTAAGAAGATGCTCCTGCTGTGGGAA  700

seq1  CTAGTGCACTCACCTGGCCTCAGCTGCTTTACTCAAAGCCTAATGTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCACTCACCTGGCCTCAGCTGCTTTACTCAAAGCCTAATGTCAGA  750

seq1  AACGATATTCCCCCACTTATTCCCATAATTTTTATCCCATTTCCACTCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATATTCCCCCACTTATTCCCATAATTTTTATCCCATTTCCACTCGG  800

seq1  CTCCCTGTTGGCTTAAAAAGGTCCCTTTTTCTTTTAAGGCATAAGAATAT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTTGGCTT-AAAAGGTCCCTTTTTCTTTTAAGGCATAAGAATAT  849

seq1  GGAGGAAATGTCATAATATTGTGTAGTCTCCAGAACCTCTCTTGCCTCTT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGG-AATGTCATAATATTGTGTAGTCTCCAGAACCTCTCTTGCCTCTT  898

seq1  AAAGAGGCTCAGATATTGCCTCTTGGTGGGGCGGGGCACTGGGAAATCAG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGAGGCTCAGATATTGCCTCTTGGTGGGGC-GGGCACTGGGAAATCAG  947

seq1  TGTCTTCTCCCCTGCCCAAGACAGGTACTATACCTGCTCACCCTCGTGCC  1000
      |||||||| |||||||| ||| |||||||||| |||||||||||||||||
seq2  TGTCTTCT-CCCTGCCC-AGA-AGGTACTATA-CTGCTCACCCTCGTGCC  993

seq1  AAGGCTTTGATACACACAGGCAACTGTGGGGCTTCATTGAGAAGCATGGA  1050
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  AAGGCTTTGATACACACAG--CACTGTGGGGCTTCATTGAGAAGCATGGA  1041

seq1  ATCTAAAACCGACTGGCCAGAAAGGAATGTAACCTATCTTTCACGAGCCT  1100
      || | |||| |||||| ||| |||||||||| ||| |||| | |||||||
seq2  AT-TTAAACGGACTGG-CAG-AAGGAATGTACCCTTTCTTAC-CGAGCCT  1087

seq1  TTGTTTTATGAGATGCTAAGACCTAGCACGAACGTGTATGAAC  1143
      ||||||| ||||||||||||| |||||||| ||||||||||||
seq2  TTGTTTT-TGAGATGCTAAGA-CTAGCACG-ACGTGTATGAAC  1127

seq1: chr1_52527094_52528194
seq2: B6Ng01-123G13.g_78_1174 (reverse)

seq1  ATTTCCCTGTACTTAAACCTGGTAAGTAGGGGTAGTAACTTTGGACCAAA  50
      ||||||||||  |||||||| |||||||||||||||| |||  |||| ||
seq2  ATTTCCCTGTTATTAAACCT-GTAAGTAGGGGTAGTACCTT--GACCCAA  47

seq1  GAGTGAAGTCAGGGCTGGAGACTTACAGCAGCCAT-CAGCTCAACAGTA-  98
      ||| ||  |||||||| |||||||||||||||||| |||||| |||||| 
seq2  GAG-GAGTTCAGGGCT-GAGACTTACAGCAGCCATCCAGCTC-ACAGTAT  94

seq1  TGTTGTGGGTGTAGCTGCTGACAGAATCCCCAGATGTCCCAATATCTTAA  148
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  TGTTGTGGGTGTAGCTGCTGACAG-ATCCCCAGATGTCCCAATATCCTAA  143

seq1  ATACTGTTTGAAGAGGCTTATGAACGAGGAAGTAGCTAACCAGTCTTCTT  198
      ||||||||||||||||| ||||||||| ||||||||||||||||| ||||
seq2  ATACTGTTTGAAGAGGC-TATGAACGAAGAAGTAGCTAACCAGTCCTCTT  192

seq1  GTG-TTAGGACCAGATGTGTGGTCTCAGCAAGCTAACCACATCGTTTA-C  246
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGTTTAGGACCAGATGTGTGGTCTCAGCAAGCTAACCACATCGTTTACC  242

seq1  AGCATTCCCAATTTTTCCATGGAGATTGCATCACCTGCTTTGCCTGCCCA  296
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AGCATTCCCAA-TTTTCCATGGAGATTGCATCACTTGCTTTGCCTGCCCA  291

seq1  GGGAGATTTGTGGGAATTAAATGAACTATGCAGATGGCAAATCTTGTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTTGTGGGAATTAAATGAACTATGCAGATGGCAAATCTTGTCAT  341

seq1  GAGGGCC-TTCATGGTCAGCTATGAGAATACTGCAAAACTGGGGTGGGGA  395
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTTTCATGGTCAGCTATGAGAATACTGCAAAACTGGGGTGGGGA  391

seq1  CCTCCAAACTTTGTACATGAAAGCTTGCTGGAAAACGGGTAGTTAGTGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACTTTGTACATGAAAGCTTGCTGGAAAACGGGTAGTTAGTGCT  441

seq1  CCACTGTTTATAATGAGAAACGAGGCATCTCGTTATCCAACAGATAAACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTATAATGAGAAACGAGGCATCTCGTTATCCAACAGATAAACA  491

seq1  ACAGGGAGAACATCTCTAAGATACTAGTATATTGGTAGAAGAATAGCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGAACATCTCTAAGATACTAGTATATTGGTAGAAGAATAGCTTT  541

seq1  GTCTTTACTGTATTTGGTACAAGGCTTATTTTGGGTCTCTGTAGCCTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTGTATTTGGTACAAGGCTTATTTTGGGTCTCTGTAGCCTTCT  591

seq1  TTCTAGGCACCAGCTGTACCATGCCATGAGCAATTTATCTCCATGTCACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCACCAGCTGTACCATGCCATGAGCAATTTATCTCCATGTCACA  641

seq1  TTGATGGCTGCTGCCATTAATTACAGCATTCCCTTGGTGATGAGAATCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGCTGCTGCCATTAATTACAGCATTCCCTTGGTGATGAGAATCTG  691

seq1  GAGCTCAGCAATGAGAATATATGATACGTGCTTGTGACCTAATTAGTCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGCAATGAGAATATATGATACGTGCTTGTGACCTAATTAGTCTC  741

seq1  ACACCATTGGTTTCCTCTCTCTCTTTCCCACTAAGCACCAGTGAGCTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGGTTTCCTCTCTCTCTTTCCCACTAAGCACCAGTGAGCTGTT  791

seq1  TTAAAGTGGCTGCCCAGTTGTCTTGGAAAGATGCATGGTGGCAGATGTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGGCTGCCCAGTTGTCTTGGAAAGATGCATGGTGGCAGATGTTC  841

seq1  TTAACCCCACGTGTGCGTTTTCCCCTTTCTCTATTCACGTTTTCTGTATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCCACGTGTGCGTTTTCCCCTTTCTCTATTCACGTTTTCTGTATG  891

seq1  AATAGCAGGTTGTACTGTTTCTGCTTTTCTGATCTAGAGAGAAGAGCCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGTTGTACTGTTTCTGCTTTTCTGATCTAGAGAGAAGAGCCCA  941

seq1  CTTCAGACTCCACCAGCTTTCCTTTCACGAGCTTAGTCACAGTGTAGGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTCCACCAGCTTTCCTTTCACGAGCTTAGTCACAGTGTAGGTG  991

seq1  GATATTCTGACCCTGCCTCTCACTCCCTGCTTCCCCAGAGCAGCTGGCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTGACCCTGCCTCTCACTCCCTGCTTCCCCAGAGCAGCTGGCTG  1041

seq1  GCAGATGTTTCCTCTTTCTTGTTCAAACCCAGTTCTCGGACTTTCTGGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTTTCCTCTTTCTTGTTCAAACCCAGTTCTCGGACTTTCTGGTC  1091

seq1  TGTTAA  1101
      ||||||
seq2  TGTTAA  1097