BAC Information

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BAC

Clone NameB6Ng01-123L01
Chromosome1 (Build37)3 (Build37)
Map Location 74,489,155 - 74,490,300127,601,040 - 127,601,789
singlet/doubletsingletsinglet
Overlap geneUsp37
Upstream geneLOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1
Downstream geneRqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123L01.bB6Ng01-123L01.g
ACCDH926789DH926790
length1,142741
definitionDH926789|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L01, 5' end.DH926790|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,489,155 - 74,490,300)(127,601,040 - 127,601,789)
sequence
gaattcataaattttgatgaattattttactttgggaagtttatcttaag
taggagattcaaaatggggagaacactataatcacacacagttgctgaac
acaccatttattataatcaaaaatggaagctgtatggggaagcatgtttg
taacgccagtgctcagcagaaggatctgaattttagttcaccttggactt
tattatatagcaaaaacctttctcaaaaaccaaaaagaaaacccaccacc
accaaaattaacgtaaatgttcagtgttagttaaaaattacctaagtagt
atgttcatttaaagggctgtagacattagaattagctcaggctggagatg
agactcagttagtagattgtgtatgtggctacataaagccctgggttcag
catggcactccatagacagagcgtggtgacaaagtctacagtgccgatac
tcgagaggttagggttatcattggcacatagttggttctttgttagtctg
aactacaggagatttcatttaaaaaaagaaacaaggggctagagagatgg
ctcaatggttaagaagaacactggctgctcttccagaggtcctgggttta
attcctagcaactacacggtggctcacaaccatccgtaaagggatctgat
gccctcttttggaatatatgctccatatacagatagagcacctatataca
tacaataaataaaaaacaaataaaaacataaaataaagttaaaaaatgga
acaaaagaacttgtaaataatcttttccccctttagacataggatttgat
tctgtagtccaggacggtcttgacctctttttggtgggtcttcgtgcttc
agcctccccagtgctgagattataggcatgagacactaagtcaagcgaat
agtatttaaccagcagaataaaaatattgcttaggttataacattttaaa
gcacatatgaaagtggggaatgacaaaataatatattaatagtgctaata
atagtgtgtgctaaaagaagtataatcccaagtaattggtatttttggaa
aaagcaattatttgcaaaaagagagaagatggctggcgtgtgcgcatgcc
tttatatcctagtactcaggagcagaagcagcggatttctga
gaattcctcctcttagccaggactagacacccctttcctctttctcattg
gctcagtgttgcctaagctcctgggtgacgtagaaaagaaggctctttta
ccctttagattttctgggagagaacaggtctcaaatacttgtctctgcat
tcctttttcttttttctgtcttgttgtctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttcttcttcttctttttctttttttttccagacaggg
tttctctgtatagccctggctgtcctggaactccctctgtagaccaggct
ggcctcaaactcagaaatccacctgcctctgcctctggagtgctgggatt
aaaggcgtgcaccacaactgcctggtttaccaatctaccattactacgca
gcttgggttctgatttgggtgtagtctgtgagagatttcacaagattagt
ttggctcccgataatgcttgtgaaggggcttggagagatggctcagtgga
gaaaggcaagggcttgctgccacttctgatcacttgaatttgataccaaa
gagccacatcatgggaggagagaactaacttctcaagttgccttctaact
aacttccacatgctctctctctctctctctctctctctctctctcacaca
cacacacacacacacacacgcacacacagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74489155_74490300
seq2: B6Ng01-123L01.b_50_1191

seq1  GAATTCATAAATTTTGATGAATTATTTTACTTTGGGAAGTTTATCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATTTTGATGAATTATTTTACTTTGGGAAGTTTATCTTAAG  50

seq1  TAGGAGATTCAAAATGGGGAGAACACTATAATCACACACAGTTGCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATTCAAAATGGGGAGAACACTATAATCACACACAGTTGCTGAAC  100

seq1  ACACCATTTATTATAATCAAAAATGGAAGCTGTATGGGGAAGCATGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTTATTATAATCAAAAATGGAAGCTGTATGGGGAAGCATGTTTG  150

seq1  TAACGCCAGTGCTCAGCAGAAGGATCTGAATTTTAGTTCACCTTGGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCCAGTGCTCAGCAGAAGGATCTGAATTTTAGTTCACCTTGGACTT  200

seq1  TATTATATAGCAAAAACCTTTCTCAAAAACCAAAAAGAAAACCCACCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAGCAAAAACCTTTCTCAAAAACCAAAAAGAAAACCCACCACC  250

seq1  ACCAAAATTAACGTAAATGTTCAGTGTTAGTTAAAAATTACCTAAGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTAACGTAAATGTTCAGTGTTAGTTAAAAATTACCTAAGTAGT  300

seq1  ATGTTCATTTAAAGGGCTGTAGACATTAGAATTAGCTCAGGCTGGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTTAAAGGGCTGTAGACATTAGAATTAGCTCAGGCTGGAGATG  350

seq1  AGACTCAGTTAGTAGATTGTGTATGTGGCTACATAAAGCCCTGGGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTTAGTAGATTGTGTATGTGGCTACATAAAGCCCTGGGTTCAG  400

seq1  CATGGCACTCCATAGACAGAGCGTGGTGACAAAGTCTACAGTGCCGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACTCCATAGACAGAGCGTGGTGACAAAGTCTACAGTGCCGATAC  450

seq1  TCGAGAGGTTAGGGTTATCATTGGCACATAGTTGGTTCTTTGTTAGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAGGTTAGGGTTATCATTGGCACATAGTTGGTTCTTTGTTAGTCTG  500

seq1  AACTACAGGAGATTTCATTTAAAAAAAGAAACAAGGGGCTAGAGAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGGAGATTTCATTTAAAAAAAGAAACAAGGGGCTAGAGAGATGG  550

seq1  CTCAATGGTTAAGAAGAACACTGGCTGCTCTTCCAGAGGTCCTGGGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGTTAAGAAGAACACTGGCTGCTCTTCCAGAGGTCCTGGGTTTA  600

seq1  ATTCCTAGCAACTACACGGTGGCTCACAACCATCCGTAAAGGGATCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCAACTACACGGTGGCTCACAACCATCCGTAAAGGGATCTGAT  650

seq1  GCCCTCTTTTGGAATATATGCTCCATATACAGATAGAGCACCTATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTTTGGAATATATGCTCCATATACAGATAGAGCACCTATATACA  700

seq1  TACAATAAATAAAAAACAAATAAAAACATAAAATAAAGTTAAAAAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAATAAAAAACAAATAAAAACATAAAATAAAGTTAAAAAATGGA  750

seq1  ACAAAAGAACTTGTAAATAATCTTTTCCCCCTTTAGACATAGGATTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACTTGTAAATAATCTTTTCCCCCTTTAGACATAGGATTTGAT  800

seq1  TCTGTAGTCCAGGACGGTCTTGACCTCTTTTTGGTGGGTCTTCGTGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTCCAGGACGGTCTTGACCTCTTTTTGGTGGGTCTTCGTGCTTC  850

seq1  AGCCTCCCCAGTGCTGAGATTATAGGCATGAGACACTAAGTCAAGCGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCCAGTGCTGAGATTATAGGCATGAGACACTAAGTCAAGCGAAT  900

seq1  AGTATTTAACCAGCAGAATAAAAATATTGCTTAGGTTATAACATTTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAACCAGCAGAATAAAAATATTGCTTAGGTTATAACATTTTAAA  950

seq1  GCACATATGAAGGT-GGGAATGACAAAATAATATATTAATAGTTGCTAAT  999
      ||||||||||| || ||||||||||||||||||||||||||| |||||||
seq2  GCACATATGAAAGTGGGGAATGACAAAATAATATATTAATAG-TGCTAAT  999

seq1  AATAGTTGTGTGCTAAAAG-AGTATAATCCCAAGTAATTGGTATTTTTGG  1048
      ||||| ||||||||||||| |||||||||||||||||||||||||||| |
seq2  AATAG-TGTGTGCTAAAAGAAGTATAATCCCAAGTAATTGGTATTTTT-G  1047

seq1  GAAAAAGCAATTATTTGCAAAAAGAGA-AGGATGGCCGGGCGTGGTGGCG  1097
      ||||||||||||||||||||||||||| | ||||| | ||||||   |||
seq2  GAAAAAGCAATTATTTGCAAAAAGAGAGAAGATGG-CTGGCGTG--TGCG  1094

seq1  CATGCCTTTA-ATCCCAGTACTCAGGAGGCAGAGGCAGGCGGATTTCTGA  1146
      |||||||||| |||| ||||||||||| ||||| ||| ||||||||||||
seq2  CATGCCTTTATATCCTAGTACTCAGGA-GCAGAAGCA-GCGGATTTCTGA  1142

seq1: chr3_127601040_127601789
seq2: B6Ng01-123L01.g_283_809 (reverse)

seq1  CTCTCTCTCTCTCTGTGTACTCAGTGTCTCACAAAAACACCCTTTCTTAT  50
      ||||||||||||||||||     |||                        
seq2  CTCTCTCTCTCTCTGTGT-----GTG------------------------  21

seq1  ACCCAGTCTGTTACACTTTGTAATGTAACCTAGTTTCTTTCTTACAACAG  100
        |  || |||                     || | | | |        
seq2  --CGTGTGTGT---------------------GTGTGTGTGT--------  40

seq1  CATCTCACAAATCCTTCTTAATGGTTTCTGCCAAACATACACCGTCCCTA  150
                             || | ||  | | | | |  |     |
seq2  -----------------------GTGTGTGAGAGAGAGAGAGAG-----A  62

seq1  GAGACA-AGAAAAATATGCTTTTGGACATCACAAATTAGAA--AAAAAAA  197
      |||| | ||| | | | || | ||||  |    | ||||||   ||    
seq2  GAGAGAGAGAGAGAGA-GCATGTGGAAGT---TAGTTAGAAGGCAACTTG  108

seq1  AGAATCTGGCTTAATGTCTGTCTTAAAGGTCTTTAAAATCTTCGATGACA  247
      ||||      ||| | ||| ||                 || | ||||  
seq2  AGAA-----GTTAGT-TCTCTC-----------------CTCCCATGATG  135

seq1  GCAATAAATATTGTATGTACATAATCAGAAAGAGGAAAGCATTTAGTGGG  297
          |   | | ||||   || | ||          |||   | ||    
seq2  TGGCT--CTTTGGTAT---CAAATTC----------AAGTGATCAG----  166

seq1  AAAGGCTGGGAGGACAAGAAAGAGAGTGTAATGGTGTGTGTGTGTAAATA  347
       |||  ||| ||  ||||                                
seq2  -AAG--TGGCAG--CAAG--------------------------------  179

seq1  TGACCAAATACTCTCTCTTCTCCTCCCAGCTTTTCTCACTAGACACT--T  395
                    | |||         || ||||||      ||||   
seq2  --------------CCCTT---------GCCTTTCTC------CACTGAG  200

seq1  CCCTCTTTCCAAACAGGGTGGCACTGGCTCCTGGTTATATACATTATC--  443
      || ||| |||||              || |||  | | |  |||||||  
seq2  CCATCTCTCCAA--------------GCCCCT--TCACAAGCATTATCGG  234

seq1  -------ATTCTTTTTGTCTAATGGC---AACATTTCATTTGAATTTTGG  483
             | |  | ||||  |||  |    | | | ||    ||      
seq2  GAGCCAAACTAATCTTGTGAAATCTCTCACAGACTACACCCAAA------  278

seq1  AATTTTTCTCTTGACTATTGTTCCCTATAAATGATCTTTAAGAAAAACCA  533
              ||   ||    | | | ||  |||| |   |  |  ||||||
seq2  --------TCAGAACCCAAGCTGCGTAGTAATGGTAGAT-TGGTAAACCA  319

seq1  ACTCGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCA  583
             ||  || |||| |||||||||||||||||||||||  ||||||
seq2  -------GGCAGTTGTGGTGCACGCCTTTAATCCCAGCACTCCAGAGGCA  362

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGC  633
      |||||||| ||||||||||||| ||||||||||||||||||| || ||| 
seq2  GAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGGGAGT  412

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAA  683
      ||||||||||||||||||||||||||||||||||||| ||||||  || |
seq2  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTGGAAAAAAAAAGA  462

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  733
      |||  |||||   |||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAA--GAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  510

seq1  AGAAAGAAAGAAAGAAA  750
      |||||||||||||||||
seq2  AGAAAGAAAGAAAGAAA  527