BAC Information

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BAC

Clone NameB6Ng01-123L08
Chromosome1 (Build37)
Map Location 65,895,678 - 66,053,889
singlet/doubletdoublet
Overlap geneCrygf
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123L08.bB6Ng01-123L08.g
ACCDH926803DH926804
length892901
definitionDH926803|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L08, 5' end.DH926804|Mus musculus domesticus DNA, BAC clone: B6Ng01-123L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,895,678 - 65,896,571)(66,052,992 - 66,053,889)
sequence
gaattctaccaggttcactagactcctccctccccgaggttatggaagca
gttaggatcagaatcctaacaggagaacttctccagcatgccaagctgcc
tacatgttgttcagagactgccagcgtatgtgagtggtggccttttggtg
aaacagtagcctctgatttacctatgcttctataagtaaccctactaaac
ttatctgttcaccctgttggcttttattgatgttattactttgttgtagt
gtcagatttctgtctagggtaagttcatatttattccaatcacctcagaa
atagtgtcatagaacaagaggacagtgtggacaggaaatgtcaactctag
aagggacacagagcacagactatcccaggtctcttctgccattgtcttgt
gtgattctgggcaaagttccataacatttcaactacaacataggactgat
ttctgagctgatttttgtaagtcgatttaaaaacgatgaatccagctttt
gcttggcttagatgtattgtaaccccagcacttgaaaggaagacagatat
atgtgagttcaaagtcaaccttaactacaaagtgagttacagagtagtat
gagctaaatatttagatgttgtttcatatatatatatataaatatatata
tttaatattaccttttttaaaaatttctaatttaaaatttttaaatttct
ctaatgtaactattagaaaaaggaaaggttcacctcgaacttactccctc
aaatacatctttggctcttcacatacttcatggttttgcatattttctgg
acttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgt
ctgtctgcagggtctctgtgtgtctatgtgtttgtctggtgt
gaattctgtcctcaataagtatttctaaacatgcataggaaattaggctt
tacaacattccattttgcatactgtggccacatatcaatggaaaatatta
gagtgtgtatccttctagcttctgtagtctgttgccttccttccttggct
gtatcgtgcacactctgtaaacttcctgagtctcctgattggaaacatga
ggctaggactgaggacagaccacagtggtagagcatcagtgaacccacag
actgggagggggctgacattccagcagcaggaatggaaaaagccgtgagt
tcaattttcagcagtaagcaattaaatgcaagcagtgaaagcatgatatt
tacacattattaaaatactataaaattagtattaaaagtttacctactat
cattaatgaataattaacagcatgtgcaaggtagagaatggatactaaca
ggtatggtactttatccaaaaactacaaaaaagtctcacggctttatagt
atgtgtggaagttttattaatatgttgtagaggattattttttaaatata
agatctatattcatacctttaaagtttttcttttctttcctttttttctt
tttcatttcttttatattggttattttacttatttacattttcaaatgtt
tcctggttttccctccaaaagacccctatcccatttcttccttctcccta
cctctatgagggtgctcccccaccctccaacccactcctgcctcactgcc
ctagcatcaaacctccagaggaccaagggtcttccaatcccattgatgca
gataaggcatcctctgctacatatatagctgggagccatggggtccctcc
atgtgtactctttggttgggtgtttagtccctgagaactctggggggggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65895678_65896571
seq2: B6Ng01-123L08.b_47_938

seq1  GAATTCTACCAGGTTCACTAGACTCCTCCCTCCCCGAGGTTATGGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAGGTTCACTAGACTCCTCCCTCCCCGAGGTTATGGAAGCA  50

seq1  GTTAGGATCAGAATCCTAACAGGAGAACTTCTCCAGCATGCCAAGCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATCAGAATCCTAACAGGAGAACTTCTCCAGCATGCCAAGCTGCC  100

seq1  TACATGTTGTTCAGAGACTGCCAGCGTATGTGAGTGGTGGCCTTTTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTGTTCAGAGACTGCCAGCGTATGTGAGTGGTGGCCTTTTGGTG  150

seq1  AAACAGTAGCCTCTGATTTACCTATGCTTCTATAAGTAACCCTACTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGCCTCTGATTTACCTATGCTTCTATAAGTAACCCTACTAAAC  200

seq1  TTATCTGTTCACCCTGTTGGCTTTTATTGATGTTATTACTTTGTTGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTCACCCTGTTGGCTTTTATTGATGTTATTACTTTGTTGTAGT  250

seq1  GTCAGATTTCTGTCTAGGGTAAGTTCATATTTATTCCAATCACCTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATTTCTGTCTAGGGTAAGTTCATATTTATTCCAATCACCTCAGAA  300

seq1  ATAGTGTCATAGAACAAGAGGACAGTGTGGACAGGAAATGTCAACTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCATAGAACAAGAGGACAGTGTGGACAGGAAATGTCAACTCTAG  350

seq1  AAGGGACACAGAGCACAGACTATCCCAGGTCTCTTCTGCCATTGTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACAGAGCACAGACTATCCCAGGTCTCTTCTGCCATTGTCTTGT  400

seq1  GTGATTCTGGGCAAAGTTCCATAACATTTCAACTACAACATAGGACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTGGGCAAAGTTCCATAACATTTCAACTACAACATAGGACTGAT  450

seq1  TTCTGAGCTGATTTTTGTAAGTCGATTTAAAAACGATGAATCCAGCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCTGATTTTTGTAAGTCGATTTAAAAACGATGAATCCAGCTTTT  500

seq1  GCTTGGCTTAGATGTATTGTAACCCCAGCACTTGAAAGGAAGACAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTTAGATGTATTGTAACCCCAGCACTTGAAAGGAAGACAGATAT  550

seq1  ATGTGAGTTCAAAGTCAACCTTAACTACAAAGTGAGTTACAGAGTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTTCAAAGTCAACCTTAACTACAAAGTGAGTTACAGAGTAGTAT  600

seq1  GAGCTAAATATTTAGATGTTGTTTCATATATATATATATAAATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAATATTTAGATGTTGTTTCATATATATATATATAAATATATATA  650

seq1  TTTAATATTACCTTTTTTAAAAATTTCTAATTTAAAATTTTTAAATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTACCTTTTTTAAAAATTTCTAATTTAAAATTTTTAAATTTCT  700

seq1  CTAATGTAACTATTAGAAAAAGGAAAGGTTCACCTCGAACTTACTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTAACTATTAGAAAAAGGAAAGGTTCACCTCGAACTTACTCCCTC  750

seq1  AAATACATCTTTGGCTCTTCACATACTTCATGGTTTTGCATATTTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCTTTGGCTCTTCACATACTTCATGGTTTTGCATATTTTCTGG  800

seq1  ACTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGT  850

seq1  CTGTCTGTCTGTGTCTCTGTGTGTCTATGTGTGTGTCTGTGTGT  894
      ||||||| | | |||||||||||||||||||| |||||| ||||
seq2  CTGTCTG-CAGGGTCTCTGTGTGTCTATGTGTTTGTCTG-GTGT  892

seq1: chr1_66052992_66053889
seq2: B6Ng01-123L08.g_68_968 (reverse)

seq1  CCCCCCCCCCAGAGTTCTCAGGGACTAAACCACCAACCAAAGAGTACACA  50
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CCCCCCCCCCAGAGTTCTCAGGGACTAAACACCCAACCAAAGAGTACACA  50

seq1  TGGAGGGA-CCCATGGCT-CCAGCTATATATGTAGCAGAGGATGGCCTTA  98
      |||||||| ||||||||| |||||||||||||||||||||||| ||||||
seq2  TGGAGGGACCCCATGGCTCCCAGCTATATATGTAGCAGAGGAT-GCCTTA  99

seq1  TCTGGCATCAATGGGATTGG-AGACCCTTGGTCCTCTGGAGGTTTGATGC  147
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCT-GCATCAATGGGATTGGAAGACCCTTGGTCCTCTGGAGGTTTGATGC  148

seq1  TAGGGCAGTGAGGCAGGAGTGGGTTGGAGGGTGGGGGAGCACCCTCATAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGTGAGGCAGGAGTGGGTTGGAGGGTGGGGGAGCACCCTCATAG  198

seq1  AGGTAGGGAGAAGGAAG-AATGGGATAGGGGTCTTTTGGAGGGAAAACCA  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGTAGGGAGAAGGAAGAAATGGGATAGGGGTCTTTTGGAGGGAAAACCA  248

seq1  GGAAACATTTG-AAATGTAAATAAGTAAAATAACCAATATAAAAGAAATG  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTTGAAAATGTAAATAAGTAAAATAACCAATATAAAAGAAATG  298

seq1  AAAAAGAAAAAAAGGAAAGAAAAGAAAAACTTTAAAGGTATGAATATAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAGGAAAGAAAAGAAAAACTTTAAAGGTATGAATATAGA  348

seq1  TCTTATATTTAAAAAATAATCCTCTACAACATATTAATAAAACTTCCACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTTAAAAAATAATCCTCTACAACATATTAATAAAACTTCCACA  398

seq1  CATACTATAAAGCCGTGAGACTTTTTTGTAGTTTTTGGATAAAGTACCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATAAAGCCGTGAGACTTTTTTGTAGTTTTTGGATAAAGTACCAT  448

seq1  ACCTGTTAGTATCCATTCTCTACCTTGCACATGCTGTTAATTATTCATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTAGTATCCATTCTCTACCTTGCACATGCTGTTAATTATTCATTA  498

seq1  ATGATAGTAGGTAAACTTTTAATACTAATTTTATAGTATTTTAATAATGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTAGGTAAACTTTTAATACTAATTTTATAGTATTTTAATAATGT  548

seq1  GTAAATATCATGCTTTCACTGCTTGCATTTAATTGCTTACTGCTGAAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATCATGCTTTCACTGCTTGCATTTAATTGCTTACTGCTGAAAAT  598

seq1  TGAACTCACGGCTTTTTCCATTCCTGCTGCTGGAATGTCAGCCCCCTCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCACGGCTTTTTCCATTCCTGCTGCTGGAATGTCAGCCCCCTCCC  648

seq1  AGTCTGTGGGTTCACTGATGCTCTACCACTGTGGTCTGTCCTCAGTCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGGTTCACTGATGCTCTACCACTGTGGTCTGTCCTCAGTCCTA  698

seq1  GCCTCATGTTTCCAATCAGGAGACTCAGGAAGTTTACAGAGTGTGCACGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGTTTCCAATCAGGAGACTCAGGAAGTTTACAGAGTGTGCACGA  748

seq1  TACAGCCAAGGAAGGAAGGCAACAGACTACAGAAGCTAGAAGGATACACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAAGGAAGGAAGGCAACAGACTACAGAAGCTAGAAGGATACACA  798

seq1  CTCTAATATTTTCCATTGATATGTGGCCACAGTATGCAAAATGGAATGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATATTTTCCATTGATATGTGGCCACAGTATGCAAAATGGAATGTT  848

seq1  GTAAAGCCTAATTTCCTATGCATGTTTAGAAATACTTATTGAGGACAGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCTAATTTCCTATGCATGTTTAGAAATACTTATTGAGGACAGAA  898

seq1  TTC  898
      |||
seq2  TTC  901