BAC Information

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BAC

Clone NameB6Ng01-124A03
Chromosome1 (Build37)5 (Build37)
Map Location 50,832,192 - 50,832,719138,211,728 - 138,212,829
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124A03.bB6Ng01-124A03.g
ACCDH927025DH927026
length9051,098
definitionDH927025|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A03, 5' end.DH927026|Mus musculus domesticus DNA, BAC clone: B6Ng01-124A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,192 - 50,832,719)(138,211,728 - 138,212,829)
sequence
gaattccttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttcttgatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
tcttgtcttattgacggtgtcttttgctttgcagaatctttgcaatttta
tgaggtcccatttatcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttccaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttactacaaggagatagaaatggatcaattcgc
atttttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactacaccaataccatgcagtttttatcacaattgc
tctgtagtacagctttaggtccggcatggttattccaccagaggttcttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atctgctgattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagaatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagactggagttcttatcataca
gatct
gaattcaaggtcagtctagcaggatgggtgagcttcaggttcaccaagag
accctgtttcaaaaaccaaggtagagggccagtgaaatggctcagcaggt
aaaggctcttgccattgagcccaacaacctaaatataactcctgggaccc
acatggagaaaggagaaatgactcccatagtataagctgtcctctgactt
ccatatgtacatggtttgtgcatgctaacaacacacacacacacacacac
acacacacacacacacacacacacacacacacactgtaaaaaaagacttt
ggtatggagaggagagcaactgagaaaaacagaatcccctggccattaca
cacacttgtacacaggcagaggttacttctgagttgtattttgcaccttg
accacaaggggcagtaaagagcaacaggcagggatcatcacattgctaga
aaactaaggcacagccccaggggttctttacctgtgtgtgggtctcaacc
ccttttgcctaagaccatcgggaaacacagatatttacactaggattcat
aacagtagcaaaattacagttacggagtaacagtggaaataatgttatgg
aaataatgtaacagtggaaataatgtcatagaggtccgcctgcctctgcc
tcccgagtgctgggattacagacacgcaccactatgcttttacaagcagt
gctgggaactgcatctaaggcttcatgcatccaaggcccagcatctcctc
tccagtcacagttttcctatggatcccacagatgcaaacccacagtcctc
cagtgttccaaggactacaggtgtgcacaactacacctaaaaatttcaat
cctttccctgtttcttttttttttttttttaaagatttatttatttattt
attattgtaagtacactgtagctgtctcagaaactccagaagaagggagt
cagatctcgttacggatggttgtgagccaccattgtgggtgctgggattt
gaactctgaccttccaaaagagcagtgggtctcttacccactggagccat
ctccaccagccctttccctggtttctaaaaatttccgtaatccatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832192_50832719
seq2: B6Ng01-124A03.b_48_576 (reverse)

seq1  CCCAGAAATGAACCCACACATCTATGGTCACTTAATTTTTGACAGGGGAG  50
      |||||| ||||||||||||| |||||||||||| || ||||||| |||||
seq2  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAG  50

seq1  CTAAAGCCATTCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGG  100
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGG  100

seq1  CACAACTGGCGGTTATCATGCAGAAGAATGTGAAATGATTCATTCCTATC  150
      |||||||||||||||||||| |||| |||| ||| |||| |||| |||||
seq2  CACAACTGGCGGTTATCATGTAGAAAAATGCGAATTGATCCATTTCTATC  150

seq1  TCCTTGTAGTAATGCCAAATCTAAGTGGATTAAGGAACTCCACTTAAAAC  200
      |||||||||||| | |||||||||||||||||||||||||||| ||||||
seq2  TCCTTGTAGTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTCCAAGAT  250
      |||||||||||||||||||||||||||| || |||||||||||  |||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTGGAAGAT  250

seq1  ATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGT  300

seq1  AAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCAAACCTTCTGTA  350
      |||||  ||||| || |||||||| |||||||| |||||||  ||||| |
seq2  AAGATCAAGAATTGATAAATGGGACCTCATAAAATTGCAAAGATTCTGCA  350

seq1  AGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAACAGATTGGGAG  400
      | |||||||||||| |||||||||||| ||||||||||||||||||||| 
seq2  AAGCAAAAGACACCGTCAATAAGACAAGAAGGCCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGATCCAATATATA  450
      ||||||||||||||||| |||||| |||||||||||| ||||||||||||
seq2  AGGATCTTTACCTATCCCAAATCAGATAGGGGACTAATATCCAATATATA  450

seq1  TAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATT-AAA  499
      | ||||||| |||||||| || |||||||||||||||||||||||| |||
seq2  TCAAGAACTCAAGAAGGTAGACTCCAGAAAATCAAATAACCCCATTAAAA  500

seq1  AATGGGGCTCAGAGCTGAACAATGAATTC  528
      |||||||||||||||||||||| ||||||
seq2  AATGGGGCTCAGAGCTGAACAAGGAATTC  529

seq1: chr5_138211728_138212829
seq2: B6Ng01-124A03.g_67_1164

seq1  GAATTCAAGGTCAGTCTAGCAGGATGGGTGAGCTTCAGGTTCACCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGTCTAGCAGGATGGGTGAGCTTCAGGTTCACCAAGAG  50

seq1  ACCCTGTTTCAAAAACCAAGGTAGAGGGCCAGTGAAATGGCTCAGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTTCAAAAACCAAGGTAGAGGGCCAGTGAAATGGCTCAGCAGGT  100

seq1  AAAGGCTCTTGCCATTGAGCCCAACAACCTAAATATAACTCCTGGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCTTGCCATTGAGCCCAACAACCTAAATATAACTCCTGGGACCC  150

seq1  ACATGGAGAAAGGAGAAATGACTCCCATAGTATAAGCTGTCCTCTGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGAAAGGAGAAATGACTCCCATAGTATAAGCTGTCCTCTGACTT  200

seq1  CCATATGTACATGGTTTGTGCATGCTAACAACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTACATGGTTTGTGCATGCTAACAACACACACACACACACACAC  250

seq1  ACACACACACACACACACACACACACACACACACTGTAAAAAAAGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTGTAAAAAAAGACTTT  300

seq1  GGTATGGAGAGGAGAGCAACTGAGAAAAACAGAATCCCCTGGCCATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGAGAGGAGAGCAACTGAGAAAAACAGAATCCCCTGGCCATTACA  350

seq1  CACACTTGTACACAGGCAGAGGTTACTTCTGAGTTGTATTTTGCACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGTACACAGGCAGAGGTTACTTCTGAGTTGTATTTTGCACCTTG  400

seq1  ACCACAAGGGGCAGTAAAGAGCAACAGGCAGGGATCATCACATTGCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGGGGCAGTAAAGAGCAACAGGCAGGGATCATCACATTGCTAGA  450

seq1  AAACTAAGGCACAGCCCCAGGGGTTCTTTACCTGTGTGTGGGTCTCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGGCACAGCCCCAGGGGTTCTTTACCTGTGTGTGGGTCTCAACC  500

seq1  CCTTTTGCCTAAGACCATCGGGAAACACAGATATTTACACTAGGATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCTAAGACCATCGGGAAACACAGATATTTACACTAGGATTCAT  550

seq1  AACAGTAGCAAAATTACAGTTACGGAGTAACAGTGGAAATAATGTTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGCAAAATTACAGTTACGGAGTAACAGTGGAAATAATGTTATGG  600

seq1  AAATAATGTAACAGTGGAAATAATGTCATAGAGGTCCGCCTGCCTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAACAGTGGAAATAATGTCATAGAGGTCCGCCTGCCTCTGCC  650

seq1  TCCCGAGTGCTGGGATTACAGACACGCACCACTATGCTTTTACAAGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGGGATTACAGACACGCACCACTATGCTTTTACAAGCAGT  700

seq1  GCTGGGAACTGCATCTAAGGCTTCATGCATCCAAGGCCCAGCATCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAACTGCATCTAAGGCTTCATGCATCCAAGGCCCAGCATCTCCTC  750

seq1  TCCAGTCACAGTTTTCCTATGGATCCCACAGATGCAAACCCACAGTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCACAGTTTTCCTATGGATCCCACAGATGCAAACCCACAGTCCTC  800

seq1  CAGTGTTCC-AGGACTACAGGTGTGCACAACTACACCTAAAAATTTCAAA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTGTTCCAAGGACTACAGGTGTGCACAACTACACCTAAAAATTTC-AA  849

seq1  TCCTTTCCCTTGTTTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTAT  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCC-TGTTTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTAT  898

seq1  TTATTTATTGTAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAG-AGG  948
      ||| |||||||||||||||||||||||| |||||| |||||||||| |||
seq2  TTA-TTATTGTAAGTACACTGTAGCTGT-CTCAGAAACTCCAGAAGAAGG  946

seq1  GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCA-TGTGGTTGCTGGG  997
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  GAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATTGTGGGTGCTGGG  996

seq1  ATTTGAACTCCTGACCTT-CAGAAGAGCAGTTGGGTGCTCTTACCCACT-  1045
      ||||||||| |||||||| || |||||||| ||||| |||||||||||| 
seq2  ATTTGAACT-CTGACCTTCCAAAAGAGCAG-TGGGT-CTCTTACCCACTG  1043

seq1  GAGCCATCT-CACCAGCCCCTTTCCCTTGTTTCTTAAGATTTCCTGTAAT  1094
      ||||||||| |||||| |||||||||| |||||| || |||||| |||||
seq2  GAGCCATCTCCACCAG-CCCTTTCCCTGGTTTCTAAAAATTTCC-GTAAT  1091

seq1  CCACTGAC  1102
      ||| ||||
seq2  CCA-TGAC  1098