BAC Information

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BAC

Clone NameB6Ng01-124E05
Chromosome1 (Build37)
Map Location 107,759,827 - 107,927,148
singlet/doubletdoublet
Overlap geneEG635504, Zcchc2
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E05.bB6Ng01-124E05.g
ACCDH927214DH927215
length1,046500
definitionDH927214|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E05, 5' end.DH927215|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,759,827 - 107,760,877)(107,926,643 - 107,927,148)
sequence
gaattcatctctgtatgacactgagttccctcttttcagcatccaggtca
atataggtgcatgcgcagtgtcaaaggagggagcagccccacgtgcatgc
gcagtgtcaaaggagggagcagccccacttgcagtagctgagaggtacta
acccaccatgcatgtagccaggtctgtgcttcagggtcttgtgcactgtg
taagagtgaccacatgtgatgatcagccacaagagagctttttttttttt
tttttttttggtttttcgagacagggtttctctgtatagcccggactgtc
ctggaactcactctgtagaccaggctggccttgaactcagaaatctgcct
gcctctgcctcccaagtgctgggattaaaggcatgtgccaccacacccgg
ctacaagagagctctttaaaaccaagaaaaccaatataagcctagtggtt
gcctgagtgactcattttatgcaagcatacatggctggagaggacagcag
cacatgcctgtggcatggaggacatctgccaagagggacagatggaggtc
accattctctaagaactacaatcagtgatggatctctatcagtcagaggc
gcttctcatgctcagacaggtaagttgtcatagagtggatggtcacttgc
aaaacagagtaggcactgtccctttcctcttcagatatgctgtccccaaa
cctgtttatatcaaacattttaatttatttgtcttttgtttgtttgtttg
ttttgacaaggtctcactatgtagccttggctgggcctagtactctgcta
tgtagaccaggttggccccaaactcaataagatctgcttgtttctgcttc
ctgagtgctggcattaagacttatgccaccacatcttggcttttataggc
attttattgaaagtttatttagatagcattatacccataaggtctcaaat
gactccattcttttaaaatcaccttttctgagtcagtatcattactaaag
gaaaattgccttttatgcctggcgcttctgtgtattctgactaatg
tgggtggggagtgcactggcagcctggggtgagcctggaaaggggaagga
agctggtggctgtgcagctgagaggcccgctgccggaagaactaccttca
cattgctcggctgagggactgtccctgtgttcccctcaatctgaggcacc
atttgatttagtcctaccacttggggtgcggattttgtgatgggatccgt
ggtagccacaggagaccctgggaaactacctgggttatggacaggaataa
aggcagtgtttggtgatccgatgctcagacttccggttggttgtggtggg
atactaactggacaactgtcagaagatccctgtggtggctgtaactttag
actctgtaatgtcagctgcaaagcaggcgcactgctgtgtgggaggaagg
ttgatgggagaggtaaaggggaagctaacaactcaaggtgtttctctgac
tccccagaagctgccgggcctaggattccaacaggggctgaatttgagga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107759827_107760877
seq2: B6Ng01-124E05.b_45_1090

seq1  GAATTCATCTCTGTATGACACTGAGTTCCCTCTTTTCAGCATCCAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTGTATGACACTGAGTTCCCTCTTTTCAGCATCCAGGTCA  50

seq1  ATATAGGTGCATGCGCAGTGTCAAAGGAGGGAGCAGCCCCACGTGCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGTGCATGCGCAGTGTCAAAGGAGGGAGCAGCCCCACGTGCATGC  100

seq1  GCAGTGTCAAAGGAGGGAGCAGCCCCACTTGCAGTAGCTGAGAGGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCAAAGGAGGGAGCAGCCCCACTTGCAGTAGCTGAGAGGTACTA  150

seq1  ACCCACCATGCATGTAGCCAGGTCTGTGCTTCAGGGTCTTGTGCACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCATGCATGTAGCCAGGTCTGTGCTTCAGGGTCTTGTGCACTGTG  200

seq1  TAAGAGTGACCACATGTGATGATCAGCCACAAGAGAGCTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGACCACATGTGATGATCAGCCACAAGAGAGCTTTTTTTTTTTT  250

seq1  TTTTTTTTTGGGTTTTCGAGACAGGGTTTCTCTGTATAGCCCGGACTGTC  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCGGACTGTC  300

seq1  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCT  350

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCCGG  400

seq1  CTACAAGAGAGCTCTTTAAAACCAAGAAAACCAATATAAGCCTAGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAGAGCTCTTTAAAACCAAGAAAACCAATATAAGCCTAGTGGTT  450

seq1  GCCTGAGTGACTCATTTTATGCAAGCATACATGGCTGGAGAGGACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTGACTCATTTTATGCAAGCATACATGGCTGGAGAGGACAGCAG  500

seq1  CACATGCCTGTGGCATGGAGGACATCTGCCAAGAGGGACAGATGGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTGTGGCATGGAGGACATCTGCCAAGAGGGACAGATGGAGGTC  550

seq1  ACCATTCTCTAAGAACTACAATCAGTGATGGATCTCTATCAGTCAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTCTAAGAACTACAATCAGTGATGGATCTCTATCAGTCAGAGGC  600

seq1  GCTTCTCATGCTCAGACAGGTAAGTTGTCATAGAGTGGATGGTCACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATGCTCAGACAGGTAAGTTGTCATAGAGTGGATGGTCACTTGC  650

seq1  AAAACAGAGTAGGCACTGTCCCTTTCCTCTTCAGATATGCTGTCCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGTAGGCACTGTCCCTTTCCTCTTCAGATATGCTGTCCCCAAA  700

seq1  CCTGTTTATATCAAACATTTTAATTTATTTGTCTTTTGTTTGTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTATATCAAACATTTTAATTTATTTGTCTTTTGTTTGTTTGTTTG  750

seq1  TTTTGACAAGGTCTCACTATGTAGCCTTGGCT-GGCCTAGTACTCTGCTA  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTGACAAGGTCTCACTATGTAGCCTTGGCTGGGCCTAGTACTCTGCTA  800

seq1  TGTAGACCAGGTTGGCCCCAAACTCAATAAGATCTGCTTGTTTCTGCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGTTGGCCCCAAACTCAATAAGATCTGCTTGTTTCTGCTTC  850

seq1  CTGAGTGCTGGCATTAAAGACTTATGCCACCACATC-TGGCTATATAAGG  898
      ||||||||||||||| |||||||||||||||||||| ||||| |   |||
seq2  CTGAGTGCTGGCATT-AAGACTTATGCCACCACATCTTGGCTTTTATAGG  899

seq1  CATTTTAATGAAAGTTTATTTAGAATAGCATTAATACCCATAAGGTCTCA  948
      ||||||| ||||||||||||||| |||||||| |||||||||||||||| 
seq2  CATTTTATTGAAAGTTTATTTAG-ATAGCATT-ATACCCATAAGGTCTC-  946

seq1  AAATGACT-CATTCTTTTAAAATCACTTTTCCTGAGTCAGTATCATTTAC  997
      |||||||| ||||||||||||||||| ||| |||||||||||||| ||||
seq2  AAATGACTCCATTCTTTTAAAATCACCTTTTCTGAGTCAGTATCA-TTAC  995

seq1  ATAAAGTAAAATTTGCCTTTTTAATGCCT-GCACTTCTGTGTATTCTGAC  1046
       ||||| |||| |||||||||  |||||| || |||||||||||||||||
seq2  -TAAAGGAAAA-TTGCCTTTT--ATGCCTGGCGCTTCTGTGTATTCTGAC  1041

seq1  TAATG  1051
      |||||
seq2  TAATG  1046

seq1: chr1_107926643_107927148
seq2: B6Ng01-124E05.g_66_571 (reverse)

seq1  TCCTCAAATTCAGCCCCTGTTGGAATCCTAGGCCCGGCAGCTTCTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAATTCAGCCCCTGTTGGAATCCTAGGCCCGGCAGCTTCTGGGGA  50

seq1  GTCAGAGAAACACCTTGAGTTGTTAGCTTCCCCTTTACCTCTCCCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAAACACCTTGAGTTGTTAGCTTCCCCTTTACCTCTCCCATCAA  100

seq1  CCTTCCTCCCACACAGCAGTGCGCCTGCTTTGCAGCTGACATTACAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCACACAGCAGTGCGCCTGCTTTGCAGCTGACATTACAGAGT  150

seq1  CTAAAGTTACAGCCACCACAGGGATCTTCTGACAGTTGTCCAGTTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTACAGCCACCACAGGGATCTTCTGACAGTTGTCCAGTTAGTAT  200

seq1  CCCACCACAACCAACCGGAAGTCTGAGCATCGGATCACCAAACACTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACAACCAACCGGAAGTCTGAGCATCGGATCACCAAACACTGCCT  250

seq1  TTATTCCTGTCCATAACCCAGGTAGTTTCCCAGGGTCTCCTGTGGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTGTCCATAACCCAGGTAGTTTCCCAGGGTCTCCTGTGGCTACC  300

seq1  ACGGATCCCATCACAAAATCCGCACCCCAAGTGGTAGGACTAAATCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATCCCATCACAAAATCCGCACCCCAAGTGGTAGGACTAAATCAAAT  350

seq1  GGTGCCTCAGATTGAGGGGAACACAGGGACAGTCCCTCAGCCGAGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCAGATTGAGGGGAACACAGGGACAGTCCCTCAGCCGAGCAATG  400

seq1  TGAAGGTAGTTCTTCCGGCAGCGGGCCTCTCAGCTGCACAGCCACCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTAGTTCTTCCGGCAGCGGGCCTCTCAGCTGCACAGCCACCAGCT  450

seq1  TCCTTCCCCTTTCCAGGCTCACCCCAGGCTGCCAGTGCACTCCCCACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCTTTCCAGGCTCACCCCAGGCTGCCAGTGCACTCCCCACCCA  500

seq1  GAATTC  506
      ||||||
seq2  GAATTC  506