BAC Information

Click to search

BAC

Clone NameB6Ng01-124H17
Chromosome1 (Build37)
Map Location 43,663,455 - 43,811,073
singlet/doubletdoublet
Overlap gene1500015O10Rik, Uxs1
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
Downstream geneLOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124H17.bB6Ng01-124H17.g
ACCDH927378DH927379
length1,0501,000
definitionDH927378|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H17, 5' end.DH927379|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,663,455 - 43,664,502)(43,810,082 - 43,811,073)
sequence
gaattcccatgaagcaattacatgctaggatgtcttcctctaatagagaa
gagaaaatccgtgtgatcagaacagaatatctgtgatcaaccataggata
tctgtttggaagtaaagagtgaagttagtttcacctactcatttcttggt
acagtcctgattgctgcttgcaataagtgctgtttttggataatctattc
aacattcacacgctcaccatctccaacaaacatatacctaccagatccat
gtactcacatgcacactcacattcaaattcatgaggctatcacacatcga
aacttctagcacgctacagcactcaatcacacacagtcttacatactcca
taaacacacacttctacctaacatatccatacttacatacacactagcac
ccgcaaaccaaaagtacatgcacgtatacatacacacccacatatataca
ccccttcttacatagcatgcccagctcattttgtaattaccctatcctct
tctttatcttgaattacttgtatgagtaaaatattcccaaaagtccccaa
gtctatgtaactcaatcagtagcttagctgagaactgtattcccagtttg
aagattttctgaaccagaaagcaactgttgcctttgtcaatatacccatc
atctttcaaggttcacaggaaggctccatgttattatgatcctccctgtt
cctgaacagttacagaaatctgctccttattccttcctatgctctgttac
tgtacctgtatccctgctaatactctagtctaagcttggaagccagtttg
ttctctgcttctagtttccatcggttgacctctaacctattctgagcctt
gggaattccattttcaccagatagtcaccaaagccaatctgtgtaatgcc
tcccacggggtcagatggatgagagacagaggtaaagataaagttcataa
cttctcatttagggcctcaaaaacagaaaagaacaacatcctgaactttt
gtgacaagttactgcgtctggacatggccttttttcctgacccaggtcca

gaattcctagacctttgacacccaggtgtggcccacttggagcatccatc
tccaatatggctacagcccacatttatatatttgtgtttgtagatgttcc
cttaggcacatgtgcacctgttacctgaggtggaggtgtgtcttcggcac
aagcccttgtgctcttgtgggaccagaagcaagcctggtgcctgcatgtg
gttgcttagtaatagctatgcaggcacactctaggttttcgaggactgcc
ctatgtggctttgagagccacaagggaccttgcttacaggtaagattagt
ttccctgtcatagatggtaaaacattgccccctagatgcgcttcgcctta
ccttttttttttttttttttttaaactttcttttttttcttctttttcaa
taactcaggtagtggaagtgaaattcagtttctctctgaagcccaggatg
acccacagaaaagaaaaccagacatcaaaaaagcaaaactgatgctgggg
tgggaacctgtggtaagtttgaaggaggcccactgcctagggagaaaggc
attcccctacccccttgtccgtcccctaagctttggcccttgttaggagg
ttttctccataggccattcagtggtatgtgatcctctgttagtgaaaatg
gctttggacctcctatgtgggcctctctatataaacacattgtccttttt
ttattctgtttgctgcaataaaatactctgaccaaaagcaccttggagag
ggaaagggagattattttggcttacacttccaggtcattagtttatcact
gaaggaagtcaggaccagaacctggaaagtaggtacaatggacgagtgct
gctgatttgctcatgggttcatgctcgctagtttttcctatacattctca
tgatagcctggccaggaaacagtggctatcctcagtagactggaatggtc
cttatcagttatgacaccatgtagtttctacagatcagccgtataaagac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43663455_43664502
seq2: B6Ng01-124H17.b_46_1092

seq1  GAATTCCCATGAAGCAATTACATGCTAGGATGTCTTCCTCTAATAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGAAGCAATTACATGCTAGGATGTCTTCCTCTAATAGAGAA  50

seq1  GAGAAAATCCGTGTGATCAGAACAGAATATCTGTGATCAACCATAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATCCGTGTGATCAGAACAGAATATCTGTGATCAACCATAGGATA  100

seq1  TCTGTTTGGAAGTAAAGAGTGAAGTTAGTTTCACCTACTCATTTCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGGAAGTAAAGAGTGAAGTTAGTTTCACCTACTCATTTCTTGGT  150

seq1  ACAGTCCTGATTGCTGCTTGCAATAAGTGCTGTTTTTGGATAATCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGATTGCTGCTTGCAATAAGTGCTGTTTTTGGATAATCTATTC  200

seq1  AACATTCACACGCTCACCATCTCCAACAAACATATACCTACCAGATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACACGCTCACCATCTCCAACAAACATATACCTACCAGATCCAT  250

seq1  GTACTCACATGCACACTCACATTCAAATTCATGAGGCTATCACACATCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACATGCACACTCACATTCAAATTCATGAGGCTATCACACATCGA  300

seq1  AACTTCTAGCACGCTACAGCACTCAATCACACACAGTCTTACATACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTAGCACGCTACAGCACTCAATCACACACAGTCTTACATACTCCA  350

seq1  TAAACACACACTTCTACCTAACATATCCATACTTACATACACACTAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACACTTCTACCTAACATATCCATACTTACATACACACTAGCAC  400

seq1  CCGCAAACCAAAAGTACATGCACGTATACATACACACCCACATATATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAACCAAAAGTACATGCACGTATACATACACACCCACATATATACA  450

seq1  CCCCTTCTTACATAGCATGCCCAGCTCATTTTGTAATTACCCTATCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTACATAGCATGCCCAGCTCATTTTGTAATTACCCTATCCTCT  500

seq1  TCTTTATCTTGAATTACTTGTATGAGTAAAATATTCCCAAAAGTCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTTGAATTACTTGTATGAGTAAAATATTCCCAAAAGTCCCCAA  550

seq1  GTCTATGTAACTCAATCAGTAGCTTAGCTGAGAACTGTATTCCCAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTAACTCAATCAGTAGCTTAGCTGAGAACTGTATTCCCAGTTTG  600

seq1  AAGATTTTCTGAACCAGAAAGCAACTGTTGCCTTTGTCAATATACCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCTGAACCAGAAAGCAACTGTTGCCTTTGTCAATATACCCATC  650

seq1  ATCTTTCAAGGTTCACAGGAAGGCTCCATGTTATTATGATCCTCCCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAAGGTTCACAGGAAGGCTCCATGTTATTATGATCCTCCCTGTT  700

seq1  CCTGAACAGTTACAGAAATCTGCTCCTTATTCCTTCCTATGCTCTGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACAGTTACAGAAATCTGCTCCTTATTCCTTCCTATGCTCTGTTAC  750

seq1  TGTACCTGTATCCCTGCTAATACTCTAGTCTAAGCTTGGAAGCCAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGTATCCCTGCTAATACTCTAGTCTAAGCTTGGAAGCCAGTTTG  800

seq1  TTCTCTGCTTCTAGTTTCCATCGGTTGACCTCTAACCTATTCTGAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTCTAGTTTCCATCGGTTGACCTCTAACCTATTCTGAGCCTT  850

seq1  GGGAATTCCATTTTCACCAGATAGTCACCAAAGCCAATCTGTGTAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTCCATTTTCACCAGATAGTCACCAAAGCCAATCTGTGTAATGCC  900

seq1  TCCCACGGGGTCAGATGGATGAGAGACAGAGGTAAAGATAAAGTTCATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGGGGTCAGATGGATGAGAGACAGAGGTAAAGATAAAGTTCATAA  950

seq1  C-TCTCATTTAGGGCCTCACAAACAGAAAAGAACAACAT-CTGAAC-TTT  997
      | ||||||||||||||||| ||||||||||||||||||| |||||| |||
seq2  CTTCTCATTTAGGGCCTCAAAAACAGAAAAGAACAACATCCTGAACTTTT  1000

seq1  GTGACAAGTTACTGCGTCTGGACAGTGCC-TTTTTCCTGACACAGTCCAG  1046
      ||||||||||||||||||||||||  ||| |||||||||||     ||||
seq2  GTGACAAGTTACTGCGTCTGGACATGGCCTTTTTTCCTGAC-----CCAG  1045

seq1  GT  1048
      ||
seq2  GT  1047

seq1: chr1_43810082_43811073
seq2: B6Ng01-124H17.g_65_1064 (reverse)

seq1  GTCTTTATCAGGCTGATCTGTAGATACTACCTTGGTTGTCATAACTGATG  50
      ||||||||  |||||||||||||| ||||| |  | ||||||||||||| 
seq2  GTCTTTATACGGCTGATCTGTAGAAACTACAT--GGTGTCATAACTGAT-  47

seq1  TAGGA-CAGTCCAGTCTACTGAGGATAG-CACTGTTTCCTTGGCAGGCTA  98
       |||| || ||||||||||||||||||| ||||||||||| | |||||||
seq2  AAGGACCATTCCAGTCTACTGAGGATAGCCACTGTTTCCTGGCCAGGCTA  97

seq1  TCATGAG-ATGTATAGG-AAAACTAGCGAGCATGAACCCATGAGCAAATC  146
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATGAGAATGTATAGGAAAAACTAGCGAGCATGAACCCATGAGCAAATC  147

seq1  AGCAGCACTCGTCCATGGTACCTAC-TTCCAGGTTCCTGTCCTGACTTCC  195
      |||||||||||||||| |||||||| ||||||||||  ||||||||||||
seq2  AGCAGCACTCGTCCATTGTACCTACTTTCCAGGTTCTGGTCCTGACTTCC  197

seq1  TTCAGTGATAAACT-ATGACCTGGAAGTGTAAGCC-AAATAATCTCCCTT  243
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  TTCAGTGATAAACTAATGACCTGGAAGTGTAAGCCAAAATAATCTCCCTT  247

seq1  TCCCTCTCCAAGGTGCTTTTGGTCAGAGTATTTTATTGCAGC-AACAGAA  292
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCCTCTCCAAGGTGCTTTTGGTCAGAGTATTTTATTGCAGCAAACAGAA  297

seq1  T-AAAAAAGGACAATGTGTTTATATAGAGAGG-CCACATAGGAGGTCC-A  339
      | |||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TAAAAAAAGGACAATGTGTTTATATAGAGAGGCCCACATAGGAGGTCCAA  347

seq1  AGCCATTTTCACTAACAGAGGATCACATACCACTGAATGGCCTATGGAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTCACTAACAGAGGATCACATACCACTGAATGGCCTATGGAGA  397

seq1  AAACCTCCTAACAAGGGCCAAAGCTTAGGGGACGGACAAGGGGGTAGGGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCTAACAAGGGCCAAAGCTTAGGGGACGGACAAGGGGGTAGGGG  447

seq1  AATGCCTTTCTCCCTAGGCAGTGGGCCTCCTTCAAACTTACCACAGGTTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTCTCCCTAGGCAGTGGGCCTCCTTCAAACTTACCACAGGTTC  497

seq1  CCACCCCAGCATCAGTTTTGCTTTTTTGATGTCTGGTTTTCTTTTCTGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGCATCAGTTTTGCTTTTTTGATGTCTGGTTTTCTTTTCTGTG  547

seq1  GGTCATCCTGGGCTTCAGAGAGAAACTGAATTTCACTTCCACTACCTGAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCTGGGCTTCAGAGAGAAACTGAATTTCACTTCCACTACCTGAG  597

seq1  TTATTGAAAAAGAAGAAAAAAAAGAAAGTTTAAAAAAAAAAAAAAAAAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAAAAAGAAGAAAAAAAAGAAAGTTTAAAAAAAAAAAAAAAAAAA  647

seq1  AGGTAAGGCGAAGCGCATCTAGGGGGCAATGTTTTACCATCTATGACAGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGCGAAGCGCATCTAGGGGGCAATGTTTTACCATCTATGACAGG  697

seq1  GAAACTAATCTTACCTGTAAGCAAGGTCCCTTGTGGCTCTCAAAGCCACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAATCTTACCTGTAAGCAAGGTCCCTTGTGGCTCTCAAAGCCACA  747

seq1  TAGGGCAGTCCTCGAAAACCTAGAGTGTGCCTGCATAGCTATTACTAAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGTCCTCGAAAACCTAGAGTGTGCCTGCATAGCTATTACTAAGC  797

seq1  AACCACATGCAGGCACCAGGCTTGCTTCTGGTCCCACAAGAGCACAAGGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGCAGGCACCAGGCTTGCTTCTGGTCCCACAAGAGCACAAGGG  847

seq1  CTTGTGCCGAAGACACACCTCCACCTCAGGTAACAGGTGCACATGTGCCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCGAAGACACACCTCCACCTCAGGTAACAGGTGCACATGTGCCT  897

seq1  AAGGGAACATCTACAAACACAAATATATAAATGTGGGCTGTAGCCATATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACATCTACAAACACAAATATATAAATGTGGGCTGTAGCCATATT  947

seq1  GGAGATGGATGCTCCAAGTGGGCCACACCTGGGTGTCAAAGGTCTAGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGATGCTCCAAGTGGGCCACACCTGGGTGTCAAAGGTCTAGGAA  997

seq1  TTC  992
      |||
seq2  TTC  1000