BAC Information

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BAC

Clone NameB6Ng01-124I02
Chromosome1 (Build37)
Map Location 59,920,299 - 60,056,630
singlet/doubletdoublet
Overlap geneBmpr2, Als2cr13, LOC100042496, Ica1l
Upstream geneEG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007
Downstream geneWdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124I02.bB6Ng01-124I02.g
ACCDH927396DH927397
length908971
definitionDH927396|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I02, 5' end.DH927397|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,055,733 - 60,056,630)(59,920,299 - 59,921,268)
sequence
gaattctagaactagccagtataaagcagaatgggagtctcctttaaaat
attaagacaggcactggagagctggctcagtggttaggaacactagttgc
tcttccagggaagccaggcttgattcccagcgcccgcccgctcgcccgcc
cgcccgcatgttgacccacaaccatctgtaactcaagttccagggaagct
gattccatcttcagacctccatggacactaattgtgctcatagtacatgg
acatacatgtgggcaaaatacacataaaataataattaaaaaacaagaca
gggatcaggaggggctcagtcaatataattgcccacgcatgtacttcagc
acaacaccatgtaaaggcttggtgggaattggtgggatggctggctcagc
tgctggggcactggccatccagtctgatggacctggttcattccctagga
accacgtggtgtcagcagggagcctgctccttgacgctttcctaagatct
tcataagcatatcccacacatgcacacacacaccaataaataaatactcg
ttaaaaaaagaaaaagttagcaagctggcaaagtggtgcacacctttaat
ctcaacacttgggagacaggcaggtggacctctgtgagtttgggtctaca
gagcaagttctaggacagcctagaaacacaaagagaaatccttgtctgga
aaaaacaaaactcaaatccaaacaaaaacaaagcaacaacaaaaaaaaca
aaagtaaggagaaagaaagaaactcgtttttcacaagtgggactgtaggg
agggctctgccttgtgttgcatttctaatctgctgagcctgcacctagtg
tgcactagggtttctgcttcactgctgggtggggagctccaactaaactt
cagagtga
gaattcttcacttttcacttttttagaagaatattttattatatttttaa
aaatattattttggagcctaacatggtggctcacatctttaatcccagca
ctaggaggcagaggcaggaggatctcagagttcaatgctagcctcctctt
cagagtgcatttcaggatagccagggttccacagagaaaccttatctgga
aacaaaacaaacaaaccaaaaaactacacacatagaaaacctgattttct
ttgacatattttaaattaaaaacctgaatatcgtttttaaaaacagcaat
tgtctggtgtgtattttgtgctacaggcagtgaggtcactcaaggaaaca
attgaagactgctgggaccaggatgcagaggctcggctcactgcacagtg
tgctgaggagaggatggctgaactcatgatgatatgggagagaaacaagt
ctgtgagcccaacggtcaacccaatgtcaactgctatgcagaatgaacgg
taaggtcctgaggggtttggtgtctacctgaaggtgtcagcaactggtac
caaataaaggacaggaataaatactggcaagccagcataatagtgtggta
actcacacttattagtgtgaaaggttatcatttttctttcagtgttccca
ttttaaaacgtgatttatttttgttattttaattatgtgggtgtgggagc
agggatgtgcagatgagttagggtgagataaggtctcccagagctaggat
atatttgtgagctctggtgctgtgaactgaaattcaggtcctctcaagaa
aaacgtatggtccttaaacactgagctgtctctgtgccttccagtatttc
cattcttattctgaaaatattattttgttatgaatacaagacagaatatg
tatttttatatctaaagatacagaaaagtaattagtctctattatctggt
tctactgggcaaacaccatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60055733_60056630
seq2: B6Ng01-124I02.b_43_950 (reverse)

seq1  TCACTCTGGAGTTTAGTTGGAGCTCCCCA-CCAGCAG-GAAGCAGAAAAC  48
      |||||||| |||||||||||||||||||| ||||||| ||||||| ||||
seq2  TCACTCTGAAGTTTAGTTGGAGCTCCCCACCCAGCAGTGAAGCAG-AAAC  49

seq1  CCTAGTGCAACACTAGCTGCAGGCTCTGCAGATTAG-AATGCAACCCAGG  97
      |||||||| ||||||| ||||||||| ||||||||| |||||||| || |
seq2  CCTAGTGC-ACACTAGGTGCAGGCTCAGCAGATTAGAAATGCAACACAAG  98

seq1  GCAGAG-CCTCCCTACAGTCCCACTTGTTGAAAACGAGTTTCTTTCTTTC  146
      |||||| |||||||||||||||||||||  ||||||||||||||||||||
seq2  GCAGAGCCCTCCCTACAGTCCCACTTGTGAAAAACGAGTTTCTTTCTTTC  148

seq1  T-CTTACTTTTG--TTTTTTGTTGTTGCTTTG-TTTTGTTTTGGTTTGAG  192
      | ||||||||||  |||||||||||||||||| |||||||| | ||||||
seq2  TCCTTACTTTTGTTTTTTTTGTTGTTGCTTTGTTTTTGTTTGGATTTGAG  198

seq1  TTTTG-TTTTTCCAGAC-AGGATTTCTC-TTGTGTTTCTAGGCTGTCCTA  239
      ||||| ||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTTTGTTTTTTCCAGACAAGGATTTCTCTTTGTGTTTCTAGGCTGTCCTA  248

seq1  GAACTTGCTCTGTAGA-CCAAACTCACAGAGGTCCACCTGCCTGTCTCCC  288
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAACTTGCTCTGTAGACCCAAACTCACAGAGGTCCACCTGCCTGTCTCCC  298

seq1  AAGTGTTGAGATTAAAGGTGTGCACCACTTTGCCAGCTTGCTAACTTTTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGAGATTAAAGGTGTGCACCACTTTGCCAGCTTGCTAACTTTTT  348

seq1  CTTTTTTTAACGAGTATTTATTTATTGGTGTGTGTGTGCATGTGTGGGAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTAACGAGTATTTATTTATTGGTGTGTGTGTGCATGTGTGGGAT  398

seq1  ATGCTTATGAAGATCTTAGGAAAGCGTCAAGGAGCAGGCTCCCTGCTGAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATGAAGATCTTAGGAAAGCGTCAAGGAGCAGGCTCCCTGCTGAC  448

seq1  ACCACGTGGTTCCTAGGGAATGAACCAGGTCCATCAGACTGGATGGCCAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGGTTCCTAGGGAATGAACCAGGTCCATCAGACTGGATGGCCAG  498

seq1  TGCCCCAGCAGCTGAGCCAGCCATCCCACCAATTCCCACCAAGCCTTTAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGCAGCTGAGCCAGCCATCCCACCAATTCCCACCAAGCCTTTAC  548

seq1  ATGGTGTTGTGCTGAAGTACATGCGTGGGCAATTATATTGACTGAGCCCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGTGCTGAAGTACATGCGTGGGCAATTATATTGACTGAGCCCC  598

seq1  TCCTGATCCCTGTCTTGTTTTTTAATTATTATTTTATGTGTATTTTGCCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCCCTGTCTTGTTTTTTAATTATTATTTTATGTGTATTTTGCCC  648

seq1  ACATGTATGTCCATGTACTATGAGCACAATTAGTGTCCATGGAGGTCTGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTCCATGTACTATGAGCACAATTAGTGTCCATGGAGGTCTGA  698

seq1  AGATGGAATCAGCTTCCCTGGAACTTGAGTTACAGATGGTTGTGGGTCAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAATCAGCTTCCCTGGAACTTGAGTTACAGATGGTTGTGGGTCAA  748

seq1  CATGCGGGCGGGCGGGCGAGCGGGCGGGCGCTGGGAATCAAGCCTGGCTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGGGCGGGCGGGCGAGCGGGCGGGCGCTGGGAATCAAGCCTGGCTT  798

seq1  CCCTGGAAGAGCAACTAGTGTTCCTAACCACTGAGCCAGCTCTCCAGTGC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAGAGCAACTAGTGTTCCTAACCACTGAGCCAGCTCTCCAGTGC  848

seq1  CTGTCTTAATATTTTAAAGGAGACTCCCATTCTGCTTTATACTGGCTAGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAATATTTTAAAGGAGACTCCCATTCTGCTTTATACTGGCTAGT  898

seq1  TCTAGAATTC  898
      ||||||||||
seq2  TCTAGAATTC  908

seq1: chr1_59920299_59921268
seq2: B6Ng01-124I02.g_66_1036

seq1  GAATTCTTCACTTTTCACTTTTTTAGAAGAATATTTTATTATATTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTTTTCACTTTTTTAGAAGAATATTTTATTATATTTTTAA  50

seq1  AAATATTATTTTGGAGCCTAACATGGTGGCTCACATCTTTAATCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATTTTGGAGCCTAACATGGTGGCTCACATCTTTAATCCCAGCA  100

seq1  CTAGGAGGCAGAGGCAGGAGGATCTCAGAGTTCAATGCTAGCCTCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCAGAGGCAGGAGGATCTCAGAGTTCAATGCTAGCCTCCTCTT  150

seq1  CAGAGTGCATTTCAGGATAGCCAGGGTTCCACAGAGAAACCTTATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCATTTCAGGATAGCCAGGGTTCCACAGAGAAACCTTATCTGGA  200

seq1  AACAAAACAAACAAACCAAAAAACTACACACATAGAAAACCTGATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAACAAACCAAAAAACTACACACATAGAAAACCTGATTTTCT  250

seq1  TTGACATATTTTAAATTAAAAACCTGAATATCGTTTTTAAAAACAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATTTTAAATTAAAAACCTGAATATCGTTTTTAAAAACAGCAAT  300

seq1  TGTCTGGTGTGTATTTTGTGCTACAGGCAGTGAGGTCACTCAAGGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTGTGTATTTTGTGCTACAGGCAGTGAGGTCACTCAAGGAAACA  350

seq1  ATTGAAGACTGCTGGGACCAGGATGCAGAGGCTCGGCTCACTGCACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGACTGCTGGGACCAGGATGCAGAGGCTCGGCTCACTGCACAGTG  400

seq1  TGCTGAGGAGAGGATGGCTGAACTCATGATGATATGGGAGAGAAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGAGAGGATGGCTGAACTCATGATGATATGGGAGAGAAACAAGT  450

seq1  CTGTGAGCCCAACGGTCAACCCAATGTCAACTGCTATGCAGAATGAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCCAACGGTCAACCCAATGTCAACTGCTATGCAGAATGAACGG  500

seq1  TAAGGTCCTGAGGGGTTTGGTGTCTACCTGAAGGTGTCAGCAACTGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCTGAGGGGTTTGGTGTCTACCTGAAGGTGTCAGCAACTGGTAC  550

seq1  CAAATAAAGGACAGGAATAAATACTGGCAAGCCAGCATAATAGTGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGGACAGGAATAAATACTGGCAAGCCAGCATAATAGTGTGGTA  600

seq1  ACTCACACTTATTAGTGTGAAAGGTTATCATTTTTCTTTCAGTGTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACTTATTAGTGTGAAAGGTTATCATTTTTCTTTCAGTGTTCCCA  650

seq1  TTTTAAAACGTGATTTATTTTTGTTATTTTAATTATGTGGGTGTGGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACGTGATTTATTTTTGTTATTTTAATTATGTGGGTGTGGGAGC  700

seq1  AGGGATGTGCAGATGAGTTAGGGTGAGATAAGGTCTCCCAGAGCTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGGATGTGCAGATGAGTTAGGGTGAGATAAGGTCTCCCAGAGCTAGGA-  749

seq1  TATATTTGTGAGCTCTGGTGCTGTGAACTG-AATTCAGGTCCTCTCAAGA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATATTTGTGAGCTCTGGTGCTGTGAACTGAAATTCAGGTCCTCTCAAGA  799

seq1  AAAACGTAT-GTTCTTAAACACTGAGCTGTCTCTGTGCCTTCCAGTATTT  848
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  AAAACGTATGGTCCTTAAACACTGAGCTGTCTCTGTGCCTTCCAGTATTT  849

seq1  CCATTCTTATTCTGAAAATATTAATTTGTTATGAATACAAGACAGAATAT  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATTCTTATTCTGAAAATATTATTTTGTTATGAATACAAGACAGAATAT  899

seq1  GTATTTTTATATCTAAAGATACAGGAAAGTTAATTAGTCTTTATTACCTG  948
      |||||||||||||||||||||||| |||| |||||||||| ||||| |||
seq2  GTATTTTTATATCTAAAGATACAGAAAAG-TAATTAGTCTCTATTATCTG  948

seq1  GTCATACT-GGCATACACCATTA  970
      ||  |||| |||| |||||||||
seq2  GTTCTACTGGGCAAACACCATTA  971